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Aliases for HSPB2-C11orf52 Gene

Subcategory (RNA class) for HSPB2-C11orf52 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for HSPB2-C11orf52 Gene

  • HSPB2-C11orf52 Readthrough (NMD Candidate) 2 3

External Ids for HSPB2-C11orf52 Gene

Summaries for HSPB2-C11orf52 Gene

Entrez Gene Summary for HSPB2-C11orf52 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring heat shock 27kDa protein 2 (HSPB2) and chromosome 11 open reading frame 52 (C11orf52) genes. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD) based on the use of the supported HSPB2 translational start codon, and it is therefore unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for HSPB2-C11orf52 Gene

HSPB2-C11orf52 (HSPB2-C11orf52 Readthrough (NMD Candidate)) is a RNA Gene, and belongs to ncRNA RNA class. An important paralog of this gene is CRYAA.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSPB2-C11orf52 Gene

Genomics for HSPB2-C11orf52 Gene

Genomic Location for HSPB2-C11orf52 Gene

Start:
111,912,736 bp from pter
End:
111,926,871 bp from pter
Size:
14,136 bases
Orientation:
Plus strand

Genomic View for HSPB2-C11orf52 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HSPB2-C11orf52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSPB2-C11orf52 Gene

No data available for Regulatory Elements for HSPB2-C11orf52 Gene

Proteins for HSPB2-C11orf52 Gene

  • Protein details for HSPB2-C11orf52 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E9PN16-E9PN16
    Recommended name:
    Protein HSPB2-C11orf52
    Protein Accession:
    E9PN16
    Secondary Accessions:

    Protein attributes for HSPB2-C11orf52 Gene

    Size:
    52 amino acids
    Molecular mass:
    5934 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HSPB2-C11orf52 Gene

Proteomics data for HSPB2-C11orf52 Gene at MOPED

Protein Expression for HSPB2-C11orf52 Gene

Post-translational modifications for HSPB2-C11orf52 Gene

No Post-translational modifications

Other Protein References for HSPB2-C11orf52 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for HSPB2-C11orf52 Gene

Domains for HSPB2-C11orf52 Gene

Protein Domains for HSPB2-C11orf52 Gene

ProtoNet:
genes like me logo Genes that share domains with HSPB2-C11orf52: view

No data available for Gene Families and UniProtKB/Swiss-Prot for HSPB2-C11orf52 Gene

Function for HSPB2-C11orf52 Gene

Gene Ontology (GO) - Molecular Function for HSPB2-C11orf52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0008047 enzyme activator activity --
genes like me logo Genes that share ontologies with HSPB2-C11orf52: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HSPB2-C11orf52 Gene

Localization for HSPB2-C11orf52 Gene

Gene Ontology (GO) - Cellular Components for HSPB2-C11orf52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005737 cytoplasm --
GO:0005829 cytosol --
genes like me logo Genes that share ontologies with HSPB2-C11orf52: view

Pathways for HSPB2-C11orf52 Gene

SuperPathways for HSPB2-C11orf52 Gene

No Data Available

Interacting Proteins for HSPB2-C11orf52 Gene

Gene Ontology (GO) - Biological Process for HSPB2-C11orf52 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006986 response to unfolded protein --
GO:0043085 positive regulation of catalytic activity --
genes like me logo Genes that share ontologies with HSPB2-C11orf52: view

No data available for Pathways by source for HSPB2-C11orf52 Gene

Transcripts for HSPB2-C11orf52 Gene

mRNA/cDNA for HSPB2-C11orf52 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HSPB2-C11orf52 Gene

No ASD Table

Relevant External Links for HSPB2-C11orf52 Gene

GeneLoc Exon Structure for
HSPB2-C11orf52
ECgene alternative splicing isoforms for
HSPB2-C11orf52

Expression for HSPB2-C11orf52 Gene

Integrated Proteomics: protein expression from PaxDb and MaxQB for HSPB2-C11orf52 Gene

Orthologs for HSPB2-C11orf52 Gene

This gene was present in the common ancestor of animals.

Orthologs for HSPB2-C11orf52 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 99 (a)
OneToMany
cow
(Bos Taurus)
Mammalia HSPB2 37
  • 98 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 96 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Hspb2 37
  • 97 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 90 (a)
OneToMany
chicken
(Gallus gallus)
Aves HSPB2 37
  • 57 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 59 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii hspb2 37
  • 50 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG13133 37
  • 18 (a)
ManyToMany
CG14207 37
  • 19 (a)
ManyToMany
CG4461 37
  • 20 (a)
ManyToMany
CG7409 37
  • 25 (a)
ManyToMany
Hsp22 37
  • 21 (a)
ManyToMany
Hsp23 37
  • 25 (a)
ManyToMany
Hsp26 37
  • 21 (a)
ManyToMany
Hsp27 37
  • 23 (a)
ManyToMany
Hsp67Ba 37
  • 11 (a)
ManyToMany
Hsp67Bc 37
  • 21 (a)
ManyToMany
l(2)efl 37
  • 28 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea F08H9.3 37
  • 20 (a)
ManyToMany
F08H9.4 37
  • 29 (a)
ManyToMany
hsp-12.1 37
  • 28 (a)
ManyToMany
hsp-12.2 37
  • 30 (a)
ManyToMany
hsp-12.3 37
  • 22 (a)
ManyToMany
hsp-12.6 37
  • 26 (a)
ManyToMany
hsp-16.1 37
  • 25 (a)
ManyToMany
hsp-16.11 37
  • 25 (a)
ManyToMany
hsp-16.2 37
  • 25 (a)
ManyToMany
hsp-16.41 37
  • 23 (a)
ManyToMany
hsp-16.48 37
  • 24 (a)
ManyToMany
hsp-16.49 37
  • 24 (a)
ManyToMany
hsp-17 37
  • 23 (a)
ManyToMany
hsp-25 37
  • 17 (a)
ManyToMany
hsp-43 37
  • 9 (a)
ManyToMany
sip-1 37
  • 19 (a)
ManyToMany
Y55F3BR.6 37
  • 22 (a)
ManyToMany
Species with no ortholog for HSPB2-C11orf52:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for HSPB2-C11orf52 Gene

ENSEMBL:
Gene Tree for HSPB2-C11orf52 (if available)
TreeFam:
Gene Tree for HSPB2-C11orf52 (if available)

Paralogs for HSPB2-C11orf52 Gene

Paralogs for HSPB2-C11orf52 Gene

genes like me logo Genes that share paralogs with HSPB2-C11orf52: view

Variants for HSPB2-C11orf52 Gene

Sequence variations from dbSNP and Humsavar for HSPB2-C11orf52 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs6589253 -- 111,915,844(+) ctcaa(A/G)caatc intron-variant
rs11214040 -- 111,915,904(+) CGCCT(A/G)GCTAA intron-variant
rs12284944 -- 111,916,659(+) cagtc(A/G)tggat intron-variant
rs79123364 -- 111,915,618(+) GAAAT(A/T)TGAAA intron-variant
rs113724285 -- 111,915,947(+) TTGTT(C/G)TCCAG intron-variant

Relevant External Links for HSPB2-C11orf52 Gene

HapMap Linkage Disequilibrium report
HSPB2-C11orf52

No data available for Structural Variations from Database of Genomic Variants (DGV) for HSPB2-C11orf52 Gene

Disorders for HSPB2-C11orf52 Gene

No disorders were found for HSPB2-C11orf52 Gene.

No data available for UniProtKB/Swiss-Prot for HSPB2-C11orf52 Gene

Publications for HSPB2-C11orf52 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3

Products for HSPB2-C11orf52 Gene

Sources for HSPB2-C11orf52 Gene

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