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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

HSPB11 Gene

protein-coding   GIFtS: 44
GCID: GC01M054387

heat shock protein family B (small), member 11

(Previous name: chromosome 1 open reading frame 41 )
(Previous symbol: C1orf41)
  Search for HSPB11
in our new
 Human Malady Compendium 
Biological research products
for HSPB11
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Heat Shock Protein Family B (Small), Member 111 2     Placental Protein 252 3
C1orf411 2 3     Chromosome 1 Open Reading Frame 411
PP251 2 3     Heat Shock Protein Beta-112
HSPCO341 2     Intraflagellar Transport 25 Homolog2
IFT251 2     Hspb113

External Ids:    HGNC: 250191   Entrez Gene: 516682   Ensembl: ENSG000000818707   UniProtKB: Q9Y5473   

Export aliases for HSPB11 gene to outside databases

Previous GC identifers: GC01M054159 GC01M052502


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

  --

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_032977.9  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the HSPB11 gene promoter:
         AhR   TBP   MIF-1   GATA-1   HNF-1A   MZF-1   HNF-1   TFIID   STAT3   ZID   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidHSPB11 promoter sequence
   Search SABiosciences Chromatin IP Primers for HSPB11

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HSPB11


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p32   Ensembl cytogenetic band:  1p32.3   HGNC cytogenetic band: 1p32

HSPB11 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HSPB11 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M054387:  view genomic region     (about GC identifiers)

Start:
54,387,234 bp from pter      End:
54,411,975 bp from pter
Size:
24,742 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: HSB11_HUMAN, Q9Y547 (See protein sequence)
Recommended Name: Heat shock protein beta-11  
Size: 144 amino acids; 16297 Da
Subunit: Component of IFT complex B composed of IFT88, IFT57, TRAF3IP1, IFT52, IFT27, HSPB11 and IFT20 (By similarity)
Sequence caution: Sequence=AAD43011.1; Type=Frameshift; Positions=77;
2 PDB 3D structures from and Proteopedia for HSPB11:
1TVG (3D)        1XPW (3D)    
Secondary accessions: A6NG57 D3DQ45 Q9Y684

Explore the universe of human proteins at neXtProt for HSPB11: NX_Q9Y547

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9Y547

  • HSPB11 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_057210.2  
    ENSEMBL proteins: 
     ENSP00000194214   ENSP00000360429   ENSP00000360428   ENSP00000360427  

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    Novus Biologicals HSPB11 Lysate
    Browse Sino Biological Recombinant Proteins
    ProSpec Recombinant Protein for HSPB11
    Browse Proteins at Uscn

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005929cilium IEA--
    GO:0030992intraflagellar transport particle B IEA--


    HSPB11 for ontologies           About GeneDecksing



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    Browse ELISAs and CLIAs at Uscn


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    HSPB11 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR008979 Galactose-bd-like
     IPR000421 Coagulation_fac_5/8-C_type_dom

    Graphical View of Domain Structure for InterPro Entry Q9Y547

    ProtoNet protein and cluster: Q9Y547


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    miRNA
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    Browse MicroRNA Expression Plasmids
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    hsa-miR-548l
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    Inhib. RNA
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat HSPB11 

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    Search LifeMap BioReagents cell lines for HSPB11

    In Situ Assay
    Products:
       

     
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    Animal Models:
         11 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Hspb11):
     cardiovascular system  craniofacial  digestive/alimentary  embryogenesis  growth/size 
     homeostasis/metabolism  limbs/digits/tail  mortality/aging  nervous system  respiratory system 
     skeleton 

    HSPB11 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HSPB11

    STRING Interaction Network Preview (showing 5 interactants - click image to see 11)

    5/12 Interacting proteins for HSPB11 (Q9Y5472, 3 ENSP000001942144) via UniProtKB, MINT, STRING, and/or I2D (see all 12)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    IFT27Q9BW832, 3, ENSP000003435934MINT-66983 I2D: score=5 STRING: ENSP00000343593
    VHLP403373, ENSP000002564744I2D: score=1 STRING: ENSP00000256474
    NUP62P371983I2D: score=1 
    APBB1IPENSP000003654114STRING: ENSP00000365411
    EIF4G3ENSP000002642114STRING: ENSP00000264211
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006950response to stress IEA--
    GO:0007155cell adhesion IEA--


    HSPB11 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for HSPB11
    Search CenterWatch for drugs/clinical trials and news about HSPB11 / HSB11 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for HSPB11 gene: 
    NM_016126.2  

    Unigene Clusters for HSPB11:

    Heat shock protein family B (small), member 11
    Hs.525462  [show with all ESTs], Hs.624686
    Unigene Representative Sequences: AK128270, BC045699
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000194214(uc001cwh.3) ENST00000489675 ENST00000371378 ENST00000371377(uc001cwi.1)
    ENST00000371376 ENST00000488884

    miRNA
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    1 QIAGEN miScript miRNA Assays for microRNA that regulate HSPB11:
    hsa-miR-548l
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for HSPB11 (see all 3)
    Browse OriGene siRNA
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    GenScript: all cDNA clones in your preferred vector: HSPB11 (NM_016126)
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    Additional cDNA sequence: BC045699.1 

    10 DOTS entries:

    DT.414964  DT.95150389  DT.100815258  DT.40118380  DT.95194110  DT.121446093  DT.95266413  DT.91762003 
    DT.95266414  DT.97861827 

    24/137 AceView cDNA sequences (see all 137):

    BM873908 BM709120 AF416725 N52699 AI828424 AI581322 BC005245 AI140006 
    BI962611 BP430126 AW024033 AI342582 BM705111 BP428737 AI343642 AF417114 
    AI457741 AA280409 CB136468 BC045699 BM663914 BM874677 BI789139 AI193596 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for HSPB11 (see all 7)    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8a · 8b · 8c
    SP1:              -     -     -           -           -                       -     -                     
    SP2:                                      -                                                               
    SP3:                                      -           -                       -     -                     
    SP4:              -     -     -           -           -                                                   
    SP5:                                      -           -                                                   


    ECgene alternative splicing isoforms for HSPB11

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    HSPB11 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ATTTTTTAAC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    HSPB11 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    HeartRight VentricleHeart
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See HSPB11 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for HSPB11

    SOURCE GeneReport for Unigene clusters: Hs.525462 Hs.624686

    UniProtKB/Swiss-Prot: HSB11_HUMAN, Q9Y547
    Tissue specificity: Detected in placenta

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    In Situ
    Assay Products:
     

     
    Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for HSPB11

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for HSPB11 gene from 4/16 species (see all 16)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Hspb111 , 5 heat shock protein family B (small), member 111, 5 86.85(n)1
    85.92(a)1
      4 (50.18 cM)5
    729381  NM_028394.21  NP_082670.11 
     1072535935 
    chicken
    (Gallus gallus)
    Aves HSPB111 heat shock protein family B (small), member 11 66.42(n)
    65.69(a)
      424654  XM_422488.3  XP_422488.1 
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.5412 Transcribed sequence with weak similarity to protein more 80.62(n)    142034388 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1586401 zgc:158640 58.08(n)
    50.76(a)
      790918  NM_001080065.1  NP_001073534.1 


    ENSEMBL Gene Tree for HSPB11 (if available)
    TreeFam Gene Tree for HSPB11 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/427 NCBI SNPs in HSPB11 are shown (see all 427    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1383536451,2
    --54386918(+) CTCAGC/TGAAAC 1 -- ds50010--------
    rs1180335711,2
    F,--54387010(+) ATCAAT/CTAAAA 1 -- ds50011Minor allele frequency- C:0.02EA 120
    rs1918085831,2
    --54387029(+) CACTAC/TGATCT 1 -- ds50010--------
    rs1496374001,2
    C,--54387288(+) AATATA/GTTGTT 1 -- ut310--------
    rs1443418491,2
    C,--54387327(+) CATTAC/TGAGGA 2 S syn10--------
    rs1401036851,2
    C,--54387395(+) AAAGGC/TTGATA 2 T A mis10--------
    rs1840498121,2
    --54387425(+) AGTAGC/TGGAGC 2 T A mis10--------
    rs1154366551,2
    C,--54387445(+) CCTGTA/TTGGGA 1 -- int12Minor allele frequency- T:0.00WA EU 1435
    rs120907891,2
    C,F,H,--54387577(+) TATAAT/CAGTTG 1 -- int120Minor allele frequency- C:0.26NS EA NA WA CSA 2346
    rs1875180511,2
    --54387637(+) TGGAGC/GTAAAA 1 -- int10--------

    HapMap Linkage Disequilibrium report for HSPB11 (54387234 - 54411975 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for HSPB11: --

    SABiosciences Cancer Mutation PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for HSPB11

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for HSPB11 gene, integrated from 9 sources (see all 16):
    (articles sorted by number of sources associating them with HSPB11)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152)1, 2, 3 Zhang Q.-H.... Chen Z. (2000)
    2. Characterization of mouse IFT complex B. (PubMed id 19253336)1, 3 Follit J.A....Pazour G.J. (2009)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Isolation and characterization of five new soluble placental tissue proteins (PP22, PP23, PP24, PP25, PP26). (PubMed id 2018407)1, 2 Bohn H. and Winckler W. (1991)
    5. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    6. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    7. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    8. Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study. (PubMed id 18816799)2 Ramelot T.A.... Kennedy M.A. (2009)
    9. Correlation between the progressive cytoplasmic expression of a novel small heat shock protein (Hsp16.2) and malignancy in brain tumors. (PubMed id 18154656)1 Pozsgai E....Bellyei S. (2007)
    10. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 51668 HGNC: 25019 AceView: C1orf41 Ensembl:ENSG00000081870 euGenes: HUgn51668
    ECgene: HSPB11 H-InvDB: HSPB11

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for HSPB11 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for HSPB11 gene:
    Search GeneIP for patents involving HSPB11

    GeneCards and IP:
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