HSPB11 Gene
protein-coding GIFtS : 44
GCID: GC01 M054387
heat shock protein family B (small), member 11 (Previous name: chromosome 1 open reading frame 41 ) (Previous symbol: C1orf41 )
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Aliasesfor HSPB11 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Heat Shock Protein Family B (Small), Member 11 1 2 Placental Protein 252 3 C1orf411 2 3 Chromosome 1 Open Reading Frame 411 PP251 2 3 Heat Shock Protein Beta-112 HSPCO341 2 Intraflagellar Transport 25 Homolog2 IFT251 2 Hspb113
Export aliases for HSPB11 gene to outside databases Previous GC identifers: GC01M054159 GC01M052502
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Summariesfor HSPB11 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Genomic Viewsfor HSPB11 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_032977.9 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HSPB11 gene promoter: AhR TBP MIF-1 GATA-1 HNF-1A MZF-1 HNF-1 TFIID STAT3 ZID Other transcription factors Search SABiosciences Chromatin IP Primers for HSPB11 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HSPB11
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p32 Ensembl cytogenetic band: 1p32.3 HGNC cytogenetic band: 1p32 HSPB11 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M054387: view genomic region
(about GC identifiers )
Start:
54,387,234 bp from pter
End:
54,411,975 bp from pter
Size:
24,742 bases
Orientation:
minus strand
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Proteinsfor HSPB11 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: HSB11_HUMAN, Q9Y547 (See
protein sequence )Recommended Name: Heat shock protein beta-11 Size : 144 amino acids; 16297 Da
Subunit : Component of IFT complex B composed of IFT88, IFT57, TRAF3IP1, IFT52, IFT27, HSPB11 and IFT20 (By similarity)
Sequence caution : Sequence=AAD43011.1; Type=Frameshift; Positions=77;
2 PDB 3D structures from and Proteopedia for HSPB11 :1TVG (3D)
  1XPW (3D)
 
Secondary accessions : A6NG57 D3DQ45 Q9Y684Explore the universe of human proteins at neXtProt for HSPB11: NX_Q9Y547 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9Y547 HSPB11 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_057210.2 ENSEMBL proteins: ENSP00000194214 ENSP00000360429 ENSP00000360428 ENSP00000360427 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005929 cilium
IEA -- GO:0030992 intraflagellar transport particle B
IEA --
HSPB11 for ontologies About GeneDecksing HSPB11 Antibody Products: Assay Products for HSPB11:
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Protein
Domains / Familiesfor HSPB11 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HSPB11 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9Y547 ProtoNet protein and cluster: Q9Y547
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Functionfor HSPB11 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HSPB11 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HSPB11 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HSPB11 (NM_016126 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HSPB11 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HSPB11
Animal Models: 11 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Hspb11) :
HSPB11 for phenotypes About GeneDecksing
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Pathways & Interactionsfor HSPB11 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HSPB11 STRING Interaction
Network Preview (showing 5 interactants - click image to see 11)5/12 Interacting proteins for HSPB11 (Q9Y547 2 , 3 ENSP00000194214 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 12 )About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006950 response to stress
IEA -- GO:0007155 cell adhesion
IEA --
HSPB11 for ontologies About GeneDecksing
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Drugs & Compoundsfor HSPB11 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for HSPB11 Search CenterWatch for drugs/clinical trials and news about HSPB11 / HSB11
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Transcriptsfor HSPB11 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for HSPB11 gene: NM_016126.2 Unigene Clusters for HSPB11:
Heat shock protein family B (small), member 11 Hs.525462 [show with all ESTs ] , Hs.624686 Unigene Representative Sequences: AK128270 , BC045699 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000194214 (uc001cwh.3 ) ENST00000489675 ENST00000371378 ENST00000371377 (uc001cwi.1 )ENST00000371376 ENST00000488884 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HSPB11 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HSPB11 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HSPB11 (NM_016126 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HSPB11 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HSPB11
Additional cDNA sequence: BC045699.1
10 DOTS entries : DT.414964 DT.95150389
DT.100815258 DT.40118380 DT.95194110 DT.121446093 DT.95266413 DT.91762003 DT.95266414 DT.97861827 24/137 AceView cDNA sequences (see all 137 ):
BM873908 BM709120 AF416725 N52699 AI828424 AI581322 BC005245 AI140006 BI962611 BP430126 AW024033 AI342582 BM705111 BP428737 AI343642 AF417114 AI457741 AA280409 CB136468 BC045699 BM663914 BM874677 BI789139 AI193596 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for HSPB11 (see all 7 ) About this scheme ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8a · 8b · 8c SP1 :     -   -   -     -     -         -   -         SP2 :             -                       SP3 :             -     -         -   -         SP4 :     -   -   -     -     -                   SP5 :             -     -                  
ECgene alternative splicing isoforms for HSPB11
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Expression for HSPB11 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section HSPB11 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATTTTTTAAC
About this image HSPB11 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Heart Right Ventricle Heart Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See HSPB11 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for HSPB11 SOURCE GeneReport for Unigene clusters: Hs.525462 Hs.624686 UniProtKB/Swiss-Prot: HSB11_HUMAN, Q9Y547 Tissue specificity : Detected in placenta SABiosciences Custom PCR Arrays for HSPB11 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HSPB11Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat HSPB11 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HSPB11 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HSPB11
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Orthologsfor HSPB11 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for HSPB11 gene from 4/16 species (see all 16 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
mouse (Mus musculus)
Mammalia
Hspb111 , 5
heat shock protein family B (small), member 111, 5
86.85(n) 1 85.92(a) 1
 
4 (50.18 cM) 5 72938 1 NM_028394.2 1 NP_082670.1 1 107253593 5
chicken (Gallus gallus)
Aves
HSPB111
heat shock protein family B (small), member 11
66.42(n) 65.69(a)
 
424654 XM_422488.3 XP_422488.1
tropical clawed frog (Xenopus tropicalis)
Amphibia
Str.5412
Transcribed sequence with weak similarity to protein more
80.62(n)
 
142034388
zebrafish (Danio rerio)
Actinopterygii
zgc:1586401
zgc:158640
58.08(n) 50.76(a)
 
790918 NM_001080065.1 NP_001073534.1
ENSEMBL Gene Tree for HSPB11 (if available)TreeFam Gene Tree for HSPB11 (if available)
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Paralogsfor HSPB11 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor HSPB11 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for HSPB11 (54387234 - 54411975 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for HSPB11: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HSPB11
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Disorders
/ Diseasesfor HSPB11 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
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Publicationsfor HSPB11 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for HSPB11 gene, integrated from 9 sources (see all 16 ): (articles sorted by number of sources associating them with HSPB11) Utopia : connect your pdf to the dynamic world of online information
Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152) 1 , 2 , 3 Zhang Q.-H.... Chen Z. (2000) Characterization of mouse IFT complex B. (PubMed id 19253336) 1 , 3 Follit J.A....Pazour G.J. (2009) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Isolation and characterization of five new soluble placental tissue proteins (PP22, PP23, PP24, PP25, PP26). (PubMed id 2018407) 1 , 2 Bohn H. and Winckler W. (1991) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study. (PubMed id 18816799) 2 Ramelot T.A.... Kennedy M.A. (2009) Correlation between the progressive cytoplasmic expression of a novel small heat shock protein (Hsp16.2) and malignancy in brain tumors. (PubMed id 18154656) 1 Pozsgai E....Bellyei S. (2007) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965) 1 Lamesch P.... Vidal M. (2007)
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External Searches for HSPB11 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HSPB11 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing HSPB11 gene
(According to HUGE )
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Specialized Databases showing HSPB11 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for HSPB11 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for HSPB11 gene: Search GeneIP for patents involving HSPB11 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HSPB11 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for HSPB11 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HSPB11 OriGene Protein Over-expression Lysate for HSPB11 Browse OriGene Fluorogenic Cell Assay Kits Browse OriGene siRNAs OriGene 3'-UTR Clone for HSPB11 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HSPB11 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HSPB11 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for HSPB11 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for HSPB11 OriGene Custom Protein Services for HSPB11 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HSPB11 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HSPB11 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HSPB11 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat HSPB11 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HSPB11 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HSPB11
Search Tocris compounds for HSPB11
Recombinant Protein for HSPB11
ThermoFisher Antibody for HSPB11
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HSPB11
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Aliases for HSPB11
Databases for HSPB11
Disorders / Diseases for HSPB11
Domains / Families for HSPB11
Drugs / Compounds for HSPB11
Expression for HSPB11
Function for HSPB11
Genomic Views for HSPB11
Intellectual Property for HSPB11
Orthologs for HSPB11
Paralogs for HSPB11
Pathways / Interactions for HSPB11
Products for HSPB11
Proteins for HSPB11
Publications for HSPB11
Search Box for HSPB11
Summaries for HSPB11
Transcripts for HSPB11
Variants for HSPB11
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