HSPA12A Gene
protein-coding GIFtS : 50
GCID: GC10 M118420
heat shock 70kDa protein 12A (Previous name: heat shock 70kD protein 12A )
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Aliasesfor HSPA12A gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Heat Shock 70kDa Protein 12A 1 2 KIAA04171 3 5 Heat Shock 70kD Protein 12A1 2 FLJ138741 Heat Shock 70 KDa Protein 12A2
Export aliases for HSPA12A gene to outside databases Previous GC identifers: GC00U991243 GC10U900081 GC10M118095 GC10M112058
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Summariesfor HSPA12A gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor HSPA12A gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000010.10 NC_018921.1 NT_030059.13 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HSPA12A gene promoter: LHX3b/Lhx3b SREBP-1c Olf-1 E47 SREBP-1b C/EBPalpha CHOP-10 SREBP-1a LHX3a/Lhx3a Other transcription factors Search SABiosciences Chromatin IP Primers for HSPA12A Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HSPA12A
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 10q26.12 Ensembl cytogenetic band: 10q25.3 HGNC cytogenetic band: 10q25.3 HSPA12A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10M118420: view genomic region
(about GC identifiers )
Start:
118,430,703 bp from pter
End:
118,502,085 bp from pter
Size:
71,383 bases
Orientation:
minus strand
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Proteinsfor HSPA12A gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: HS12A_HUMAN, O43301 (See
protein sequence )Recommended Name: Heat shock 70 kDa protein 12A Size : 675 amino acids; 74978 Da
Sequence caution : Sequence=BAA24847.1; Type=Erroneous initiation;Explore the universe of human proteins at neXtProt for HSPA12A: NX_O43301 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O43301 HSPA12A Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_079291.2 ENSEMBL proteins: ENSP00000358211 ENSP00000466041 ENSP00000466927 Human Recombinant Protein Products for HSPA12A: HSPA12A Antibody Products: Assay Products for HSPA12A:
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Protein
Domains / Familiesfor HSPA12A gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HSPA12A for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry O43301 ProtoNet protein and cluster: O43301
UniProtKB/Swiss-Prot: HS12A_HUMAN, O43301 Similarity : Belongs to the heat shock protein 70 family
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Functionfor HSPA12A gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005524 ATP binding
IEA --
HSPA12A for ontologies About GeneDecksing Phenotypes: 2 GenomeRNAi human phenotypes for HSPA12A :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HSPA12A (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HSPA12A (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HSPA12A (NM_025015 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HSPA12A Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HSPA12A
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HSPA12A
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Pathways & Interactionsfor HSPA12A gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HSPA12A STRING Interaction
Network Preview (showing 4 interactants - click image to see more details)5/743 Interacting proteins for HSPA12A (O43301 2 , 3 ENSP00000358211 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 743 )About this table
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Drugs & Compoundsfor HSPA12A gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for HSPA12A Search CenterWatch for drugs/clinical trials and news about HSPA12A / HS12A
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Transcriptsfor HSPA12A gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for HSPA12A gene: NM_025015.2 Unigene Cluster for HSPA12A:
Heat shock 70kDa protein 12A Hs.648448 [show with all ESTs ] Unigene Representative Sequence: BC041412 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000369209 (uc001lct.3 uc001lcu.3 ) ENST00000480802 ENST00000481291 ENST00000468935 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HSPA12A (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HSPA12A (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HSPA12A (NM_025015 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HSPA12A Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HSPA12A
Additional cDNA sequence: AB007877.1 AK092127.1 AK294672.1 AK294884.1 BC041412.2
10 DOTS entries : DT.91654985 DT.415949
DT.95212944 DT.92423108 DT.121266282 DT.92423104 DT.70103489 DT.102825368 DT.102833658 DT.40108169 24/108 AceView cDNA sequences (see all 108 ):
AI760141 BQ876472 AI783610 BX477784 BQ717512 AI760152 BM712644 BQ722196 AL120441 AI124891 AA351039 CA448640 AB007877 BX280116 AA351210 N77058 BX955887 AA393528 AA398449 W81404 BU738372 BQ003691 BE048045 BQ182948 GeneLoc Exon Structure
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Expression for HSPA12A gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section HSPA12A expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CACCAATGTAAbout this image HSPA12A expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See HSPA12A Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for HSPA12A SOURCE GeneReport for Unigene cluster: Hs.648448 UniProtKB/Swiss-Prot: HS12A_HUMAN, O43301 Tissue specificity : Widely expressed with highest levels in brain, kidney and muscle SABiosciences Expression via Pathway-Focused PCR Arrays including HSPA12A : Cellular Stress Responses in human mouse rat Heat Shock Proteins & Chaperones in human mouse rat
Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HSPA12ABrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat HSPA12A QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HSPA12A QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HSPA12A In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HSPA12A
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Orthologsfor HSPA12A gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for HSPA12A gene from 4/16 species (see all 16 ) About this table
ENSEMBL Gene Tree for HSPA12A (if available)TreeFam Gene Tree for HSPA12A (if available)
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Paralogsfor HSPA12A gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for HSPA12A gene HSPA12B 2 1 SIMAP similar gene for HSPA12A using alignment to 3 protein entries: HS12A_HUMAN (see all proteins ):HSPA12B
HSPA12A for paralogs About GeneDecksing
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Genomic Variantsfor HSPA12A gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 10 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for HSPA12A (118430703 - 118502085 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for HSPA12A: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HSPA12A
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Disorders
/ Diseasesfor HSPA12A gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
HSPA12A for disorders About GeneDecksing
OMIM gene information: 610701
OMIM disorders : --1 disease for HSPA12A : About MalaCards schizophrenia Human Genome Epidemiology (HuGE) Navigator: HSPA12A (2 documents) Export disorders for HSPA12A gene to outside databases
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Publicationsfor HSPA12A gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for HSPA12A gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with HSPA12A) Utopia : connect your pdf to the dynamic world of online information
Two Hsp70 family members expressed in atherosclerotic lesions. (PubMed id 12552099) 1 , 2 , 3 Han Z.... Breslow J.L. (2003) Prediction of the coding sequences of unidentified human genes. VIII. 78 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 9455477) 1 , 2 Ishikawa K....Ohara O. (1997) Heat shock protein 12A shows reduced expression in the prefrontal cortex of subjects with schizophrenia. (PubMed id 15601604) 1 , 9 Pongrac J.L....Mirnics K. (2004) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Oxidative stress, telomere length and biomarkers of physical aging in a cohort aged 79 years from the 1932 Scottish Mental Survey. (PubMed id 18977241) 1 Starr J.M....Deary I.J. (2008) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008) A genetic association analysis of cognitive ability and cognitive ageing using 325 markers for 109 genes associated with oxidative stress or cognition. (PubMed id 17601350) 1 Harris S.E....Deary I.J. (2007) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 Ota T.... Sugano S. (2004) Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs. (PubMed id 12421765) 1 Nakayama M....Ohara O. (2002)
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External Searches for HSPA12A gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HSPA12A gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing HSPA12A gene
(According to HUGE )
About This Section
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Specialized Databases showing HSPA12A gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for HSPA12A Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for HSPA12A gene: Search GeneIP for patents involving HSPA12A GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HSPA12A gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for HSPA12A OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for HSPA12A OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HSPA12A OriGene Protein Over-expression Lysate for HSPA12A Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for HSPA12A OriGene 3'-UTR Clone for HSPA12A OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HSPA12A OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HSPA12A Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for HSPA12A OriGene Custom Protein Services for HSPA12A OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HSPA12A QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HSPA12A QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HSPA12A QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat HSPA12A QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HSPA12A QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HSPA12A
Search Tocris compounds for HSPA12A
HSPA12A Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HSPA12A
ThermoFisher Antibodies for HSPA12A
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HSPA12A
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Aliases for HSPA12A
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Disorders / Diseases for HSPA12A
Domains / Families for HSPA12A
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Function for HSPA12A
Genomic Views for HSPA12A
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