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Aliases for HSFY2 Gene

Aliases for HSFY2 Gene

  • Heat Shock Transcription Factor, Y Linked 2 2 3
  • Heat Shock Transcription Factor 2-Like Protein 3 4
  • HSF2L 3 4
  • HSFY 3 4
  • Heat Shock Transcription Factor, Y-Linked 3
  • HSFY1 HSFY2 4
  • HSF2-Like 4

External Ids for HSFY2 Gene

Previous GeneCards Identifiers for HSFY2 Gene

  • GC0YP019605
  • GC0YM019281
  • GC0YM020893

Summaries for HSFY2 Gene

Entrez Gene Summary for HSFY2 Gene

  • This gene encodes a member of the heat shock factor (HSF) family of transcriptional activators for heat shock proteins. This gene is a candidate gene for azoospermia, since it localizes to a region of chromosome Y that is sometimes deleted in infertile males. The genome has two identical copies of this gene within a palindromic region; this record represents the more telomeric copy. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for HSFY2 Gene

HSFY2 (Heat Shock Transcription Factor, Y Linked 2) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and sequence-specific DNA binding. An important paralog of this gene is HSFX1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSFY2 Gene

Genomics for HSFY2 Gene

Regulatory Elements for HSFY2 Gene

Genomic Location for HSFY2 Gene

Start:
18,731,440 bp from pter
End:
18,828,662 bp from pter
Size:
97,223 bases
Orientation:
Minus strand

Genomic View for HSFY2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HSFY2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSFY2 Gene

Proteins for HSFY2 Gene

  • Protein details for HSFY2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LI6-HSFY1_HUMAN
    Recommended name:
    Heat shock transcription factor, Y-linked
    Protein Accession:
    Q96LI6
    Secondary Accessions:
    • Q17RC0
    • Q7Z4L8
    • Q9BZA2
    • Q9BZA3

    Protein attributes for HSFY2 Gene

    Size:
    401 amino acids
    Molecular mass:
    45107 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for HSFY2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HSFY2 Gene

Proteomics data for HSFY2 Gene at MOPED

Post-translational modifications for HSFY2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HSFY2 Gene

No data available for DME Specific Peptides for HSFY2 Gene

Domains for HSFY2 Gene

Protein Domains for HSFY2 Gene

Suggested Antigen Peptide Sequences for HSFY2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96LI6

UniProtKB/Swiss-Prot:

HSFY1_HUMAN :
  • Q96LI6
Family:
  • Belongs to the HSF family.
genes like me logo Genes that share domains with HSFY2: view

No data available for Gene Families for HSFY2 Gene

Function for HSFY2 Gene

Gene Ontology (GO) - Molecular Function for HSFY2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0005515 protein binding IPI 25416956
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with HSFY2: view

Animal Model Products

CRISPR Products

miRNA for HSFY2 Gene

miRTarBase miRNAs that target HSFY2

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HSFY2

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for HSFY2 Gene

Localization for HSFY2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HSFY2 Gene

Nucleus. Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HSFY2 Gene COMPARTMENTS Subcellular localization image for HSFY2 gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for HSFY2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with HSFY2: view

Pathways for HSFY2 Gene

SuperPathways for HSFY2 Gene

No Data Available

Interacting Proteins for HSFY2 Gene

Gene Ontology (GO) - Biological Process for HSFY2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with HSFY2: view

No data available for Pathways by source for HSFY2 Gene

Transcripts for HSFY2 Gene

Unigene Clusters for HSFY2 Gene

Heat shock transcription factor, Y linked 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HSFY2

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HSFY2 Gene

No ASD Table

Relevant External Links for HSFY2 Gene

GeneLoc Exon Structure for
HSFY2
ECgene alternative splicing isoforms for
HSFY2

Expression for HSFY2 Gene

mRNA expression in normal human tissues for HSFY2 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for HSFY2 Gene

SOURCE GeneReport for Unigene cluster for HSFY2 Gene Hs.592255

mRNA Expression by UniProt/SwissProt for HSFY2 Gene

Q96LI6-HSFY1_HUMAN
Tissue specificity: Testis-specific. Present in Sertoli cells and spermatogenic cells (at protein level).
genes like me logo Genes that share expressions with HSFY2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for HSFY2 Gene

Orthologs for HSFY2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HSFY2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 71 (a)
ManyToMany
-- 36
  • 59 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 36
  • 45 (a)
ManyToMany
-- 36
  • 42 (a)
ManyToMany
-- 36
  • 44 (a)
ManyToMany
-- 36
  • 45 (a)
ManyToMany
HSFY2 35
  • 70.56 (n)
  • 54.91 (a)
HSFY2 36
  • 51 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 22 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Hsfy2 35
  • 65.87 (n)
  • 47.75 (a)
Hsfy2 16
Hsfy2 36
  • 42 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 28 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 40 (a)
ManyToMany
-- 36
  • 53 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Hsfy2 35
  • 65.34 (n)
  • 47.75 (a)
chicken
(Gallus gallus)
Aves LOC100859862 35
  • 56.21 (n)
  • 42.65 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 40 (a)
OneToMany
Species with no ortholog for HSFY2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HSFY2 Gene

ENSEMBL:
Gene Tree for HSFY2 (if available)
TreeFam:
Gene Tree for HSFY2 (if available)

Paralogs for HSFY2 Gene

Paralogs for HSFY2 Gene

genes like me logo Genes that share paralogs with HSFY2: view

Variants for HSFY2 Gene

Sequence variations from dbSNP and Humsavar for HSFY2 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs233742 -- 18,746,142(+) TTACC(A/G)AGGCC intron-variant
rs233743 -- 18,747,358(+) tctcc(C/T)aaggc intron-variant
rs369081915 -- 18,769,967(+) ATACA(-/TG)TGTGT intron-variant
rs374664752 -- 18,759,046(+) ACACT(A/G)AAATA intron-variant
rs377416015 -- 18,770,005(+) TGTGT(A/G)TATAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HSFY2 Gene

Variant ID Type Subtype PubMed ID
esv1670141 OTHER Inversion 17803354
dgv2500e1 CNV Complex 17122850
nsv10022 CNV Gain 18304495

Relevant External Links for HSFY2 Gene

HapMap Linkage Disequilibrium report
HSFY2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HSFY2 Gene

Disorders for HSFY2 Gene

(1) University of Copenhagen DISEASES for HSFY2 Gene

genes like me logo Genes that share disorders with HSFY2: view

No data available for UniProtKB/Swiss-Prot for HSFY2 Gene

Publications for HSFY2 Gene

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Molecular characterization of heat shock-like factor encoded on the human Y chromosome, and implications for male infertility. (PMID: 15044259) Shinka T. … Nakahori Y. (Biol. Reprod. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways. (PMID: 25036637) Taipale M. … Lindquist S. (Cell 2014) 3

Products for HSFY2 Gene

Sources for HSFY2 Gene

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