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Aliases for HSFY1 Gene

Aliases for HSFY1 Gene

  • Heat Shock Transcription Factor, Y-Linked 1 2 3
  • HSFY 3 4 6
  • Heat Shock Transcription Factor 2-Like Protein 3 4
  • Heat Shock Transcription Factor, Y-Linked 2 3
  • HSF2L 3 4
  • Heat Shock Transcription Factor 2
  • HSFY1 HSFY2 4
  • Y-Linked 1 2
  • HSF2-Like 4

External Ids for HSFY1 Gene

Previous Symbols for HSFY1 Gene

  • HSFY

Summaries for HSFY1 Gene

Entrez Gene Summary for HSFY1 Gene

  • This gene encodes a member of the heat shock factor (HSF) family of transcriptional activators for heat shock proteins. This gene is a candidate gene for azoospermia, since it localizes to a region of chromosome Y that is sometimes deleted in infertile males. The genome has two identical copies of this gene within a palindromic region; this record represents the more centromeric copy. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for HSFY1 Gene

HSFY1 (Heat Shock Transcription Factor, Y-Linked 1) is a Protein Coding gene. Diseases associated with HSFY1 include y chromosome infertility and azoospermia. An important paralog of this gene is HSFX1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSFY1 Gene

Genomics for HSFY1 Gene

Genomic Location for HSFY1 Gene

Start:
18,546,671 bp from pter
End:
18,588,963 bp from pter
Size:
42,293 bases
Orientation:
Plus strand

Genomic View for HSFY1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HSFY1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSFY1 Gene

Regulatory Elements for HSFY1 Gene

Proteins for HSFY1 Gene

  • Protein details for HSFY1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LI6-HSFY1_HUMAN
    Recommended name:
    Heat shock transcription factor, Y-linked
    Protein Accession:
    Q96LI6
    Secondary Accessions:
    • Q17RC0
    • Q7Z4L8
    • Q9BZA2
    • Q9BZA3

    Protein attributes for HSFY1 Gene

    Size:
    401 amino acids
    Molecular mass:
    45107 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for HSFY1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HSFY1 Gene

Proteomics data for HSFY1 Gene at MOPED

Post-translational modifications for HSFY1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HSFY1 Gene

No data available for DME Specific Peptides for HSFY1 Gene

Domains for HSFY1 Gene

Protein Domains for HSFY1 Gene

UniProtKB/Swiss-Prot:

HSFY1_HUMAN
Family:
  • Belongs to the HSF family.:
    • Q96LI6
genes like me logo Genes that share domains with HSFY1: view

No data available for Gene Families for HSFY1 Gene

Function for HSFY1 Gene

Gene Ontology (GO) - Molecular Function for HSFY1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0005515 protein binding IPI 25416956
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with HSFY1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HSFY1 Gene

Localization for HSFY1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HSFY1 Gene

Nucleus. Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HSFY1 Gene COMPARTMENTS Subcellular localization image for HSFY1 gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for HSFY1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with HSFY1: view

Pathways for HSFY1 Gene

SuperPathways for HSFY1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HSFY1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with HSFY1: view

No data available for Pathways by source for HSFY1 Gene

Transcripts for HSFY1 Gene

Unigene Clusters for HSFY1 Gene

Heat shock transcription factor, Y-linked 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HSFY1 Gene

No ASD Table

Relevant External Links for HSFY1 Gene

GeneLoc Exon Structure for
HSFY1
ECgene alternative splicing isoforms for
HSFY1

Expression for HSFY1 Gene

mRNA expression in normal human tissues for HSFY1 Gene

mRNA differential expression in normal tissues according to GTEx for HSFY1 Gene

This gene is overexpressed in Brain - Cortex (6.9), Brain - Hippocampus (5.8), Testis (5.3), Brain - Hypothalamus (5.0), Brain - Anterior cingulate cortex (BA24) (4.8), and Brain - Frontal Cortex (BA9) (4.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for HSFY1 Gene

SOURCE GeneReport for Unigene cluster for HSFY1 Gene Hs.662281

mRNA Expression by UniProt/SwissProt for HSFY1 Gene

Q96LI6-HSFY1_HUMAN
Tissue specificity: Testis-specific. Present in Sertoli cells and spermatogenic cells (at protein level).
genes like me logo Genes that share expressions with HSFY1: view

Orthologs for HSFY1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HSFY1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 71 (a)
ManyToMany
-- 37
  • 59 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 37
  • 45 (a)
ManyToMany
-- 37
  • 42 (a)
ManyToMany
-- 37
  • 44 (a)
ManyToMany
-- 37
  • 45 (a)
ManyToMany
HSFY2 36
  • 70.56 (n)
  • 54.91 (a)
HSFY2 37
  • 51 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 22 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Hsfy2 36
  • 65.87 (n)
  • 47.75 (a)
Hsfy2 37
  • 42 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 28 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 40 (a)
ManyToMany
-- 37
  • 53 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Hsfy2 36
  • 65.34 (n)
  • 47.75 (a)
chicken
(Gallus gallus)
Aves -- 37
  • 30 (a)
ManyToMany
LOC100859862 36
  • 56.21 (n)
  • 42.65 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 40 (a)
OneToMany
Species with no ortholog for HSFY1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HSFY1 Gene

ENSEMBL:
Gene Tree for HSFY1 (if available)
TreeFam:
Gene Tree for HSFY1 (if available)

Paralogs for HSFY1 Gene

Paralogs for HSFY1 Gene

genes like me logo Genes that share paralogs with HSFY1: view

Variants for HSFY1 Gene

Sequence variations from dbSNP and Humsavar for HSFY1 Gene

SNP ID Clin Chr 0Y pos Sequence Context AA Info Type MAF
rs233741 -- 18,578,081(-) CCTCC(A/G)GTGTA intron-variant
rs113127496 -- 18,562,483(+) TCTAA(A/C)AGTTA intron-variant
rs113411234 -- 18,554,971(+) GAAAC(A/C)CCATC intron-variant
rs377142238 -- 18,561,357(+) TATTT(C/T)AGTGT intron-variant
rs550039266 -- 18,557,549(+) GTGTT(A/G)TGTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HSFY1 Gene

Variant ID Type Subtype PubMed ID
esv1670141 OTHER Inversion 17803354
dgv2500e1 CNV Complex 17122850
nsv10022 CNV Gain 18304495

Relevant External Links for HSFY1 Gene

HapMap Linkage Disequilibrium report
HSFY1
Human Gene Mutation Database (HGMD)
HSFY1

Disorders for HSFY1 Gene

(1) University of Copenhagen DISEASES for HSFY1 Gene

Relevant External Links for HSFY1

GeneTests
HSFY1
GeneReviews
HSFY1
genes like me logo Genes that share disorders with HSFY1: view

No data available for UniProtKB/Swiss-Prot for HSFY1 Gene

Publications for HSFY1 Gene

  1. Molecular characterization of heat shock-like factor encoded on the human Y chromosome, and implications for male infertility. (PMID: 15044259) Shinka T. … Nakahori Y. (Biol. Reprod. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. (PMID: 12815422) Skaletsky H. … Page D.C. (Nature 2003) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. Characterization of HSFY, a novel AZFb gene on the Y chromosome with a possible role in human spermatogenesis. (PMID: 14985478) Tessari A. … Foresta C. (Mol. Hum. Reprod. 2004) 3

Products for HSFY1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HSFY1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HSFY1
    • Block miRNA regulation of HSFY1 using miScript Target Protectors

    Sources for HSFY1 Gene

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