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Aliases for HSD52 Gene

Subcategory (RNA class) for HSD52 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for HSD52 Gene

  • Uncharacterized LOC729467 3 5

External Ids for HSD52 Gene

Previous GeneCards Identifiers for HSD52 Gene

  • GC01M059599

Summaries for HSD52 Gene

GeneCards Summary for HSD52 Gene

HSD52 (Uncharacterized LOC729467) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for HSD52 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSD52 Gene

Genomics for HSD52 Gene

GeneHancer (GH) Regulatory Elements for HSD52 Gene

Promoters and enhancers for HSD52 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I059214 Enhancer 1.2 Ensembl ENCODE 33.4 -6.7 -6658 1.4 PKNOX1 FOXA2 MLX ARNT ARID4B FEZF1 DMAP1 ZNF2 YY1 ZNF213 HSD52 GC01M059291 LINC01358
GH01I059203 Enhancer 1 Ensembl ENCODE 33.9 +4.0 3997 0.6 ELF3 FOXA2 ARID4B RAD21 RARA YY1 THAP11 RXRA CEBPB REST HSD52 GC01M059164 LINC01358
GH01I059149 Enhancer 1.2 Ensembl ENCODE dbSUPER 24.4 +57.3 57296 3.1 PKNOX1 FOXA2 INSM2 KLF17 SIN3A RFX5 ETS1 ZNF366 FOS BCLAF1 HSD52 LINC01135 JUN FGGY GC01M059164 GC01P059086 LINC01358
GH01I059145 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 13.2 +61.2 61243 2.1 ELF3 SIN3A ZNF48 RAD21 RARA ZNF143 IKZF2 RUNX3 MXD4 ZHX2 HSD52 GC01M059164 GC01P059086 LINC01358
GH01I059155 Enhancer 0.8 Ensembl dbSUPER 24.5 +51.6 51620 1.4 FEZF1 ZBTB8A ZIC2 SP1 OSR2 POLR2A ZNF341 FOSL2 TCF7L2 TRIM28 HSD52 FGGY GC01M059164 GC01P059086 LINC01358
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HSD52 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HSD52 Gene

Genomic Locations for HSD52 Gene
chr1:59,131,936-59,208,121
(GRCh38/hg38)
Size:
76,186 bases
Orientation:
Minus strand
chr1:59,597,608-59,664,293
(GRCh37/hg19)

Genomic View for HSD52 Gene

Genes around HSD52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HSD52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSD52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSD52 Gene

Proteins for HSD52 Gene

Post-translational modifications for HSD52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HSD52 Gene

Domains & Families for HSD52 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HSD52 Gene

Function for HSD52 Gene

Phenotypes From GWAS Catalog for HSD52 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSD52 Gene

Localization for HSD52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HSD52 Gene

Pathways & Interactions for HSD52 Gene

SuperPathways for HSD52 Gene

No Data Available

Interacting Proteins for HSD52 Gene

Gene Ontology (GO) - Biological Process for HSD52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HSD52 Gene

Drugs & Compounds for HSD52 Gene

No Compound Related Data Available

Transcripts for HSD52 Gene

mRNA/cDNA for HSD52 Gene

(2) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HSD52 Gene

Uncharacterized LOC729467:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HSD52 Gene

No ASD Table

Relevant External Links for HSD52 Gene

GeneLoc Exon Structure for
HSD52

Expression for HSD52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HSD52 Gene

mRNA differential expression in normal tissues according to GTEx for HSD52 Gene

This gene is overexpressed in Testis (x18.4), Muscle - Skeletal (x15.6), and Adipose - Subcutaneous (x4.0).

SOURCE GeneReport for Unigene cluster for HSD52 Gene:

Hs.662291
genes like me logo Genes that share expression patterns with HSD52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HSD52 Gene

Orthologs for HSD52 Gene

Evolution for HSD52 Gene

ENSEMBL:
Gene Tree for HSD52 (if available)
TreeFam:
Gene Tree for HSD52 (if available)

No data available for Orthologs for HSD52 Gene

Paralogs for HSD52 Gene

No data available for Paralogs for HSD52 Gene

Variants for HSD52 Gene

Sequence variations from dbSNP and Humsavar for HSD52 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000066875 -- 59,141,479(-) G/A intron_variant
rs1000287810 -- 59,134,776(-) C/T intron_variant
rs1000390189 -- 59,143,710(-) C/T intron_variant
rs1000457610 -- 59,138,727(-) G/A intron_variant
rs1000740413 -- 59,143,925(-) T/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HSD52 Gene

Variant ID Type Subtype PubMed ID
nsv829970 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for HSD52 Gene

Disorders for HSD52 Gene

Additional Disease Information for HSD52

No disorders were found for HSD52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HSD52 Gene

Publications for HSD52 Gene

No publications were found for HSD52 Gene.

Products for HSD52 Gene

Sources for HSD52 Gene

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