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Aliases for HSD52 Gene

Subcategory (RNA class) for HSD52 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for HSD52 Gene

  • Uncharacterized LOC729467 3 5

External Ids for HSD52 Gene

Previous GeneCards Identifiers for HSD52 Gene

  • GC01M059599

Summaries for HSD52 Gene

GeneCards Summary for HSD52 Gene

HSD52 (Uncharacterized LOC729467) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSD52 Gene

Genomics for HSD52 Gene

Regulatory Elements for HSD52 Gene

Enhancers for HSD52 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F059203 1.1 Ensembl ENCODE 33.9 +4.2 4197 1.0 TBP ELF3 ARID4B RAD21 ZNF48 RARA YY1 CREM MIXL1 THAP11 HSD52 GC01M059164
GH01F059214 1.1 ENCODE 33.4 -6.7 -6659 1.4 PKNOX1 MLX ARID4B FEZF1 DMAP1 ZNF2 ZNF416 NFYC MXD4 KAT8 HSD52 PGBD4P8 GC01M059291
GH01F059149 1.1 Ensembl ENCODE 24.4 +57.2 57189 3.3 PKNOX1 INSM2 KLF17 SIN3A RAD21 ZNF366 FOS DEK ZNF263 CEBPB HSD52 JUN LINC01135 FGGY GC01M059164 GC01P059086
GH01F059155 0.6 Ensembl 24.4 +51.4 51421 1.8 ZBTB8A NR3C1 FEZF1 ZIC2 OSR2 ZNF341 ZNF652 TRIM28 TCF7L2 HSD52 FGGY GC01M059164 GC01P059086
GH01F059223 0.6 ENCODE 23.9 -16.2 -16187 1.4 CEBPB CEBPG ZIC2 NR2F2 ARID1B OSR2 CEBPA PBX2 BCL6 HSD52 GC01M059291
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HSD52 on UCSC Golden Path with GeneCards custom track

Genomic Location for HSD52 Gene

Chromosome:
1
Start:
59,131,936 bp from pter
End:
59,208,121 bp from pter
Size:
76,186 bases
Orientation:
Minus strand

Genomic View for HSD52 Gene

Genes around HSD52 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HSD52 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSD52 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSD52 Gene

Proteins for HSD52 Gene

Post-translational modifications for HSD52 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HSD52 Gene

Domains & Families for HSD52 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HSD52 Gene

Function for HSD52 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HSD52 Gene

Localization for HSD52 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HSD52 Gene

Pathways & Interactions for HSD52 Gene

SuperPathways for HSD52 Gene

No Data Available

Interacting Proteins for HSD52 Gene

Gene Ontology (GO) - Biological Process for HSD52 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HSD52 Gene

Transcripts for HSD52 Gene

mRNA/cDNA for HSD52 Gene

(2) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HSD52 Gene

Uncharacterized LOC729467:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HSD52 Gene

No ASD Table

Relevant External Links for HSD52 Gene

GeneLoc Exon Structure for
HSD52

Expression for HSD52 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HSD52 Gene

mRNA differential expression in normal tissues according to GTEx for HSD52 Gene

This gene is overexpressed in Testis (x18.4), Muscle - Skeletal (x15.6), and Adipose - Subcutaneous (x4.0).

SOURCE GeneReport for Unigene cluster for HSD52 Gene:

Hs.662291
genes like me logo Genes that share expression patterns with HSD52: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HSD52 Gene

Orthologs for HSD52 Gene

Evolution for HSD52 Gene

ENSEMBL:
Gene Tree for HSD52 (if available)
TreeFam:
Gene Tree for HSD52 (if available)

No data available for Orthologs for HSD52 Gene

Paralogs for HSD52 Gene

No data available for Paralogs for HSD52 Gene

Variants for HSD52 Gene

Sequence variations from dbSNP and Humsavar for HSD52 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10651359 -- 59,139,336(+) AAAAA(-/A)GAGAG intron-variant
rs10789076 -- 59,135,017(+) GAGCC(A/G)CAGGA intron-variant
rs10889130 -- 59,148,708(+) ACATT(A/T)AAAAA upstream-variant-2KB
rs111348259 -- 59,139,522(+) CTGTC(-/T)TGGCC intron-variant
rs111561281 -- 59,134,264(+) TGGAC(A/G)CACAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HSD52 Gene

Variant ID Type Subtype PubMed ID
nsv829970 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for HSD52 Gene

Disorders for HSD52 Gene

Relevant External Links for HSD52

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HSD52

No disorders were found for HSD52 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HSD52 Gene

Publications for HSD52 Gene

No publications were found for HSD52 Gene.

Products for HSD52 Gene

Sources for HSD52 Gene

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