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Aliases for HSD17B7P2 Gene

Aliases for HSD17B7P2 Gene

  • Hydroxysteroid 17-Beta Dehydrogenase 7 Pseudogene 2 2 3 5
  • Hydroxysteroid (17-Beta) Dehydrogenase 7 Pseudogene 2 2
  • 17beta-Hydroxysteroid Dehydrogenase Type 7 Form 2 3
  • BA291L22.1 3
  • Hsd17b_2 3
  • HSD17B7 3

External Ids for HSD17B7P2 Gene

Previous GeneCards Identifiers for HSD17B7P2 Gene

  • GC10U900126
  • GC10P038686

Summaries for HSD17B7P2 Gene

GeneCards Summary for HSD17B7P2 Gene

HSD17B7P2 (Hydroxysteroid 17-Beta Dehydrogenase 7 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HSD17B7P2 Gene

Genomics for HSD17B7P2 Gene

Regulatory Elements for HSD17B7P2 Gene

Enhancers for HSD17B7P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F038358 0.5 Ensembl 20.9 +1.9 1921 0.2 GATA3 HSD17B7P2 GC10P038391
GH10F038401 0.6 ENCODE 19.6 +46.6 46561 2.8 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 GLIS2 ELK1 HSD17B7P2 ENSG00000272983 SEPT7P9 LINC00999 SLC9B1P3 ENSG00000226447 LOC101929540
GH10F038354 0.2 ENCODE 17.6 -0.7 -712 2.8 HDGF CTCF DRAP1 PKNOX1 ATF1 SAP130 ARID4B SIN3A GLI4 RFX5 ENSG00000272983 HSD17B7P2 ENSG00000234941
GH10F038093 0.2 ENCODE 11.2 -261.7 -261677 2.0 ATF1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ETS1 YY1 GLIS2 ENSG00000272983 CICP9 ZNF37A HSD17B7P2 ZNF25 SLC9B1P3 GC10P038118
GH10F038396 0.2 Ensembl 11.1 +40.0 40021 0.8 HSD17B7P2 SEPT7P9 GC10P038391
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HSD17B7P2 on UCSC Golden Path with GeneCards custom track

Promoters for HSD17B7P2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001422840 520 2200 HDGF CTCF DRAP1 PKNOX1 SAP130 ARID4B SIN3A GLI4 RFX5 TEAD3

Genomic Location for HSD17B7P2 Gene

Chromosome:
10
Start:
38,356,380 bp from pter
End:
38,378,505 bp from pter
Size:
22,126 bases
Orientation:
Plus strand

Genomic View for HSD17B7P2 Gene

Genes around HSD17B7P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HSD17B7P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HSD17B7P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HSD17B7P2 Gene

Proteins for HSD17B7P2 Gene

Post-translational modifications for HSD17B7P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HSD17B7P2 Gene

Domains & Families for HSD17B7P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HSD17B7P2 Gene

Function for HSD17B7P2 Gene

Phenotypes for HSD17B7P2 Gene

GenomeRNAi human phenotypes for HSD17B7P2:
genes like me logo Genes that share phenotypes with HSD17B7P2: view

Animal Model Products

miRNA for HSD17B7P2 Gene

miRTarBase miRNAs that target HSD17B7P2

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HSD17B7P2 Gene

Localization for HSD17B7P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HSD17B7P2 Gene

Pathways & Interactions for HSD17B7P2 Gene

SuperPathways for HSD17B7P2 Gene

No Data Available

Interacting Proteins for HSD17B7P2 Gene

Gene Ontology (GO) - Biological Process for HSD17B7P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HSD17B7P2 Gene

Drugs & Compounds for HSD17B7P2 Gene

(2) Drugs for HSD17B7P2 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(3) Additional Compounds for HSD17B7P2 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with HSD17B7P2: view

Transcripts for HSD17B7P2 Gene

mRNA/cDNA for HSD17B7P2 Gene

Unigene Clusters for HSD17B7P2 Gene

Hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HSD17B7P2 Gene

No ASD Table

Relevant External Links for HSD17B7P2 Gene

GeneLoc Exon Structure for
HSD17B7P2
ECgene alternative splicing isoforms for
HSD17B7P2

Expression for HSD17B7P2 Gene

mRNA expression in normal human tissues for HSD17B7P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of HSD17B7P2 Gene:

HSD17B7P2

SOURCE GeneReport for Unigene cluster for HSD17B7P2 Gene:

Hs.652484
genes like me logo Genes that share expression patterns with HSD17B7P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HSD17B7P2 Gene

Orthologs for HSD17B7P2 Gene

Evolution for HSD17B7P2 Gene

ENSEMBL:
Gene Tree for HSD17B7P2 (if available)
TreeFam:
Gene Tree for HSD17B7P2 (if available)

No data available for Orthologs for HSD17B7P2 Gene

Paralogs for HSD17B7P2 Gene

No data available for Paralogs for HSD17B7P2 Gene

Variants for HSD17B7P2 Gene

Sequence variations from dbSNP and Humsavar for HSD17B7P2 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1060746 -- 38,359,923(+) GAAGA(C/T)GTTTG intron-variant
rs10764162 -- 38,366,956(+) TGCAC(C/T)CAGCC intron-variant
rs10827866 -- 38,366,700(+) ACAGA(G/T)TCTCA intron-variant
rs10827867 -- 38,378,388(+) ATATA(C/T)GTAAA nc-transcript-variant
rs11011549 -- 38,375,471(+) TGGTG(A/G)TATCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HSD17B7P2 Gene

Variant ID Type Subtype PubMed ID
dgv10e203 CNV gain 21179565
dgv709n100 CNV gain 25217958
esv33710 CNV loss 17666407
esv3576438 CNV gain 25503493
nsv428230 CNV loss 18775914
nsv947859 CNV duplication 23825009

Relevant External Links for HSD17B7P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HSD17B7P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HSD17B7P2 Gene

Disorders for HSD17B7P2 Gene

Relevant External Links for HSD17B7P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HSD17B7P2

No disorders were found for HSD17B7P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HSD17B7P2 Gene

Publications for HSD17B7P2 Gene

  1. Determination of cDNA, gene structure and chromosomal localization of the novel human 17beta-hydroxysteroid dehydrogenase type 7. (PMID: 10544267) Krazeisen A. … Adamski J. (FEBS Lett. 1999) 2 3 22 64
  2. Closing the gap: identification of human 3-ketosteroid reductase, the last unknown enzyme of mammalian cholesterol biosynthesis. (PMID: 12829805) Marijanovic Z. … Breitling R. (Mol. Endocrinol. 2003) 3 22 64
  3. Analysis of 17beta-hydroxysteroid dehydrogenase types 5, 7, and 12 genetic sequence variants in breast cancer cases from French Canadian Families with high risk of breast and ovarian cancer. (PMID: 19460435) Plourde M. … Simard J. (J. Steroid Biochem. Mol. Biol. 2009) 22 64
  4. Single nucleotide polymorphisms of 17beta-hydroxysteroid dehydrogenase type 7 gene: mechanism of estramustine-related adverse reactions? (PMID: 19735314) Ozeki T. … Yamada Y. (Int. J. Urol. 2009) 22 64
  5. Depot-specific steroidogenic gene transcription in human adipose tissue. (PMID: 18410552) MacKenzie S.M. … Davies E. (Clin. Endocrinol. (Oxf) 2008) 22 64

Products for HSD17B7P2 Gene

Sources for HSD17B7P2 Gene

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