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Aliases for HS6ST2-AS1 Gene

Subcategory (RNA class) for HS6ST2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HS6ST2-AS1 Gene

  • HS6ST2 Antisense RNA 1 2 3 5
  • HS6ST2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HS6ST2-AS1 Gene

Previous GeneCards Identifiers for HS6ST2-AS1 Gene

  • GC00U933753
  • GC0XP131802

Summaries for HS6ST2-AS1 Gene

GeneCards Summary for HS6ST2-AS1 Gene

HS6ST2-AS1 (HS6ST2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HS6ST2-AS1 Gene

Genomics for HS6ST2-AS1 Gene

Regulatory Elements for HS6ST2-AS1 Gene

Enhancers for HS6ST2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF132749 0.8 Ensembl ENCODE 0.2 +83.9 83877 3.4 CTBP1 ZNF146 GATA3 ZNF280D ZMYM3 DPF2 HS6ST2 RPS24P19 HS6ST2-AS1 ENSG00000227064
GH0XF132737 0.8 Ensembl ENCODE 0.2 +70.4 70359 0.4 STAT1 FEZF1 FOS ZIC2 HS6ST2-AS1 ENSG00000227064
GH0XF132622 0.7 Ensembl 0.2 -45.3 -45342 0.2 SMARCE1 JUN DPF2 ZBTB7A ARID1B JUND ATF3 SMARCA4 STAT3 FOS GC0XM132581 RNU6-98P HS6ST2-AS1
GH0XF132875 0.8 ENCODE 0.1 +208.6 208638 1.9 BCOR PKNOX1 ZNF146 ZNF384 FEZF1 ZIC2 ZFHX2 PRDM10 EGR2 ZNF280D ENSG00000227064 HS6ST2-AS1
GH0XF132610 0.3 FANTOM5 0.2 -56.9 -56856 0.3 USP26 HS6ST2 RNU6-98P GC0XM132581 HS6ST2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HS6ST2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HS6ST2-AS1 Gene

Chromosome:
X
Start:
132,667,642 bp from pter
End:
132,669,888 bp from pter
Size:
2,247 bases
Orientation:
Plus strand

Genomic View for HS6ST2-AS1 Gene

Genes around HS6ST2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HS6ST2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HS6ST2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HS6ST2-AS1 Gene

Proteins for HS6ST2-AS1 Gene

Post-translational modifications for HS6ST2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HS6ST2-AS1 Gene

Domains & Families for HS6ST2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HS6ST2-AS1 Gene

Function for HS6ST2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HS6ST2-AS1 Gene

Localization for HS6ST2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HS6ST2-AS1 Gene

Pathways & Interactions for HS6ST2-AS1 Gene

SuperPathways for HS6ST2-AS1 Gene

No Data Available

Interacting Proteins for HS6ST2-AS1 Gene

Gene Ontology (GO) - Biological Process for HS6ST2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HS6ST2-AS1 Gene

Transcripts for HS6ST2-AS1 Gene

mRNA/cDNA for HS6ST2-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HS6ST2-AS1 Gene

HS6ST2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HS6ST2-AS1 Gene

No ASD Table

Relevant External Links for HS6ST2-AS1 Gene

GeneLoc Exon Structure for
HS6ST2-AS1
ECgene alternative splicing isoforms for
HS6ST2-AS1

Expression for HS6ST2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HS6ST2-AS1 Gene

SOURCE GeneReport for Unigene cluster for HS6ST2-AS1 Gene:

Hs.619341
genes like me logo Genes that share expression patterns with HS6ST2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HS6ST2-AS1 Gene

Orthologs for HS6ST2-AS1 Gene

Evolution for HS6ST2-AS1 Gene

ENSEMBL:
Gene Tree for HS6ST2-AS1 (if available)
TreeFam:
Gene Tree for HS6ST2-AS1 (if available)

No data available for Orthologs for HS6ST2-AS1 Gene

Paralogs for HS6ST2-AS1 Gene

No data available for Paralogs for HS6ST2-AS1 Gene

Variants for HS6ST2-AS1 Gene

Sequence variations from dbSNP and Humsavar for HS6ST2-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs10550199 -- 132,669,325(+) GCCAA(-/TC)TCTCT intron-variant
rs111510857 -- 132,670,023(+) GATTT(A/C)CATGG intron-variant, downstream-variant-500B
rs112262276 -- 132,666,858(+) GAACA(C/T)GGCAT intron-variant, upstream-variant-2KB
rs11348383 -- 132,669,509(+) GTTTT(-/A)AAAAA intron-variant
rs113947572 -- 132,668,740(+) CAGGT(C/T)TTCAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HS6ST2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3559342 CNV deletion 23714750

Relevant External Links for HS6ST2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HS6ST2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HS6ST2-AS1 Gene

Disorders for HS6ST2-AS1 Gene

Relevant External Links for HS6ST2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HS6ST2-AS1

No disorders were found for HS6ST2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HS6ST2-AS1 Gene

Publications for HS6ST2-AS1 Gene

No publications were found for HS6ST2-AS1 Gene.

Products for HS6ST2-AS1 Gene

Sources for HS6ST2-AS1 Gene

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