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Aliases for HS6ST2-AS1 Gene

Subcategory (RNA class) for HS6ST2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HS6ST2-AS1 Gene

  • HS6ST2 Antisense RNA 1 2 3 5
  • HS6ST2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HS6ST2-AS1 Gene

Previous GeneCards Identifiers for HS6ST2-AS1 Gene

  • GC00U933753
  • GC0XP131802

Summaries for HS6ST2-AS1 Gene

GeneCards Summary for HS6ST2-AS1 Gene

HS6ST2-AS1 (HS6ST2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HS6ST2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HS6ST2-AS1 Gene

Genomics for HS6ST2-AS1 Gene

GeneHancer (GH) Regulatory Elements for HS6ST2-AS1 Gene

Promoters and enhancers for HS6ST2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI132737 Enhancer 0.5 ENCODE 0.2 +70.3 70316 0 STAT1 FEZF1 FOS ZIC2 HS6ST2-AS1 ENSG00000227064 HS6ST2
GH0XI132875 Enhancer 0.7 ENCODE 0.1 +208.6 208638 1.9 PKNOX1 ZNF384 FEZF1 ZIC2 ZFHX2 PRDM10 EGR2 ZNF362 ZNF10 ZBTB11 ENSG00000227064 HS6ST2 HS6ST2-AS1
GH0XI132610 Enhancer 0.2 FANTOM5 0.2 -56.9 -56856 0.3 USP26 HS6ST2 GC0XM132581 RNU6-98P HS6ST2-AS1
GH0XI132748 Enhancer 0.2 ENCODE 0.2 +81.4 81406 0.2 HS6ST2-AS1 ENSG00000227064 HS6ST2
GH0XI132749 Enhancer 0.2 ENCODE 0.2 +83.9 83877 3.4 HS6ST2 RPS24P19 HS6ST2-AS1 ENSG00000227064
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HS6ST2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HS6ST2-AS1 Gene

Genomic Locations for HS6ST2-AS1 Gene
chrX:132,667,642-132,669,888
(GRCh38/hg38)
Size:
2,247 bases
Orientation:
Plus strand
chrX:131,801,670-131,803,916
(GRCh37/hg19)

Genomic View for HS6ST2-AS1 Gene

Genes around HS6ST2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HS6ST2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HS6ST2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HS6ST2-AS1 Gene

Proteins for HS6ST2-AS1 Gene

Post-translational modifications for HS6ST2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HS6ST2-AS1 Gene

Domains & Families for HS6ST2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HS6ST2-AS1 Gene

Function for HS6ST2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HS6ST2-AS1 Gene

Localization for HS6ST2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HS6ST2-AS1 Gene

Pathways & Interactions for HS6ST2-AS1 Gene

SuperPathways for HS6ST2-AS1 Gene

No Data Available

Interacting Proteins for HS6ST2-AS1 Gene

Gene Ontology (GO) - Biological Process for HS6ST2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HS6ST2-AS1 Gene

Drugs & Compounds for HS6ST2-AS1 Gene

No Compound Related Data Available

Transcripts for HS6ST2-AS1 Gene

mRNA/cDNA for HS6ST2-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HS6ST2-AS1 Gene

HS6ST2 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HS6ST2-AS1 Gene

No ASD Table

Relevant External Links for HS6ST2-AS1 Gene

GeneLoc Exon Structure for
HS6ST2-AS1
ECgene alternative splicing isoforms for
HS6ST2-AS1

Expression for HS6ST2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HS6ST2-AS1 Gene

SOURCE GeneReport for Unigene cluster for HS6ST2-AS1 Gene:

Hs.619341
genes like me logo Genes that share expression patterns with HS6ST2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HS6ST2-AS1 Gene

Orthologs for HS6ST2-AS1 Gene

Evolution for HS6ST2-AS1 Gene

ENSEMBL:
Gene Tree for HS6ST2-AS1 (if available)
TreeFam:
Gene Tree for HS6ST2-AS1 (if available)

No data available for Orthologs for HS6ST2-AS1 Gene

Paralogs for HS6ST2-AS1 Gene

No data available for Paralogs for HS6ST2-AS1 Gene

Variants for HS6ST2-AS1 Gene

Sequence variations from dbSNP and Humsavar for HS6ST2-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000037374 -- 132,668,198(+) G/C intron_variant
rs1000573750 -- 132,667,970(+) G/A/T intron_variant
rs1002218408 -- 132,669,881(+) C/T non_coding_transcript_variant
rs1002248070 -- 132,669,659(+) A/T non_coding_transcript_variant
rs1002646908 -- 132,670,053(+) C/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HS6ST2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3559342 CNV deletion 23714750

Additional Variant Information for HS6ST2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HS6ST2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HS6ST2-AS1 Gene

Disorders for HS6ST2-AS1 Gene

Additional Disease Information for HS6ST2-AS1

No disorders were found for HS6ST2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HS6ST2-AS1 Gene

Publications for HS6ST2-AS1 Gene

No publications were found for HS6ST2-AS1 Gene.

Products for HS6ST2-AS1 Gene

Sources for HS6ST2-AS1 Gene

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