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Aliases for HS1BP3-IT1 Gene

Subcategory (RNA class) for HS1BP3-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HS1BP3-IT1 Gene

  • HS1BP3 Intronic Transcript 1 2 3 5
  • HS1BP3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HS1BP3-IT1 Gene

Previous GeneCards Identifiers for HS1BP3-IT1 Gene

  • GC00U933150
  • GC02M020791

Summaries for HS1BP3-IT1 Gene

GeneCards Summary for HS1BP3-IT1 Gene

HS1BP3-IT1 (HS1BP3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HS1BP3-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HS1BP3-IT1 Gene

Genomics for HS1BP3-IT1 Gene

GeneHancer (GH) Regulatory Elements for HS1BP3-IT1 Gene

Promoters and enhancers for HS1BP3-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I020590 Enhancer 0.8 Ensembl ENCODE dbSUPER 550.8 +1.3 1327 0.6 RXRA HNF4A HS1BP3-IT1 GDF7 ENSG00000269976 HS1BP3
GH02I020566 Enhancer 2.2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 5.9 +18.4 18441 14.5 PKNOX1 CLOCK FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 PUM2 TTC32 RHOB GDF7 ENSG00000228950 WDR35 RNU6-961P HS1BP3-IT1 HS1BP3 ENSG00000269976
GH02I020592 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -4.0 -4015 8.5 HDGF PKNOX1 FOXA2 SMAD1 MLX ZFP64 ARID4B DMAP1 IRF4 YY1 RHOB GDF7 ENSG00000228950 APOB HS1BP3 HS1BP3-IT1 RPS25P3
GH02I020601 Enhancer 0.8 ENCODE dbSUPER 0.4 -8.8 -8830 0.5 SMARCA5 BCOR CTCF NFRKB E4F1 RAD21 ZNF592 ZFHX2 ZNF766 EGR1 ENSG00000228950 RHOB GDF7 HS1BP3-IT1 RPS25P3 HS1BP3
GH02I020604 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -12.5 -12532 1.1 JUND POLR2A RPS25P3 RHOB ENSG00000228950 GDF7 HS1BP3-IT1 HS1BP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HS1BP3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HS1BP3-IT1 Gene

Genomic Locations for HS1BP3-IT1 Gene
chr2:20,590,775-20,592,548
(GRCh38/hg38)
Size:
1,774 bases
Orientation:
Minus strand
chr2:20,790,535-20,792,308
(GRCh37/hg19)

Genomic View for HS1BP3-IT1 Gene

Genes around HS1BP3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HS1BP3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HS1BP3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HS1BP3-IT1 Gene

Proteins for HS1BP3-IT1 Gene

Post-translational modifications for HS1BP3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HS1BP3-IT1 Gene

Domains & Families for HS1BP3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HS1BP3-IT1 Gene

Function for HS1BP3-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HS1BP3-IT1 Gene

Localization for HS1BP3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HS1BP3-IT1 Gene

Pathways & Interactions for HS1BP3-IT1 Gene

SuperPathways for HS1BP3-IT1 Gene

No Data Available

Interacting Proteins for HS1BP3-IT1 Gene

Gene Ontology (GO) - Biological Process for HS1BP3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HS1BP3-IT1 Gene

Drugs & Compounds for HS1BP3-IT1 Gene

No Compound Related Data Available

Transcripts for HS1BP3-IT1 Gene

mRNA/cDNA for HS1BP3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HS1BP3-IT1 Gene

No ASD Table

Relevant External Links for HS1BP3-IT1 Gene

GeneLoc Exon Structure for
HS1BP3-IT1
ECgene alternative splicing isoforms for
HS1BP3-IT1

Expression for HS1BP3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HS1BP3-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HS1BP3-IT1 Gene

This gene is overexpressed in Liver (x19.7).
genes like me logo Genes that share expression patterns with HS1BP3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HS1BP3-IT1 Gene

Orthologs for HS1BP3-IT1 Gene

Evolution for HS1BP3-IT1 Gene

ENSEMBL:
Gene Tree for HS1BP3-IT1 (if available)
TreeFam:
Gene Tree for HS1BP3-IT1 (if available)

No data available for Orthologs for HS1BP3-IT1 Gene

Paralogs for HS1BP3-IT1 Gene

No data available for Paralogs for HS1BP3-IT1 Gene

Variants for HS1BP3-IT1 Gene

Sequence variations from dbSNP and Humsavar for HS1BP3-IT1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000181905 -- 20,594,390(-) C/T upstream_transcript_variant
rs1000486559 -- 20,593,100(-) C/G upstream_transcript_variant
rs1001077762 -- 20,593,246(-) C/A upstream_transcript_variant
rs1002768546 -- 20,593,745(-) G/A upstream_transcript_variant
rs1002871742 -- 20,591,564(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HS1BP3-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv56n68 CNV loss 17160897
nsv581167 CNV gain 21841781

Additional Variant Information for HS1BP3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HS1BP3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HS1BP3-IT1 Gene

Disorders for HS1BP3-IT1 Gene

Additional Disease Information for HS1BP3-IT1

No disorders were found for HS1BP3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HS1BP3-IT1 Gene

Publications for HS1BP3-IT1 Gene

No publications were found for HS1BP3-IT1 Gene.

Products for HS1BP3-IT1 Gene

Sources for HS1BP3-IT1 Gene

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