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Aliases for HS1BP3-IT1 Gene

Subcategory (RNA class) for HS1BP3-IT1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HS1BP3-IT1 Gene

  • HS1BP3 Intronic Transcript 1 2 3
  • HS1BP3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HS1BP3-IT1 Gene

ORGUL Members for HS1BP3-IT1 Gene

Previous GeneCards Identifiers for HS1BP3-IT1 Gene

  • GC00U933150
  • GC02M020791

Summaries for HS1BP3-IT1 Gene

GeneCards Summary for HS1BP3-IT1 Gene

HS1BP3-IT1 (HS1BP3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HS1BP3-IT1 Gene

Genomics for HS1BP3-IT1 Gene

Genomic Location for HS1BP3-IT1 Gene

Start:
20,590,775 bp from pter
End:
20,592,548 bp from pter
Size:
1,774 bases
Orientation:
Minus strand

Genomic View for HS1BP3-IT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HS1BP3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HS1BP3-IT1 Gene

No data available for Regulatory Elements for HS1BP3-IT1 Gene

Proteins for HS1BP3-IT1 Gene

Post-translational modifications for HS1BP3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HS1BP3-IT1 Gene

Domains for HS1BP3-IT1 Gene

Gene Families for HS1BP3-IT1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HS1BP3-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HS1BP3-IT1 Gene

Function for HS1BP3-IT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HS1BP3-IT1 Gene

Localization for HS1BP3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HS1BP3-IT1 Gene

Pathways for HS1BP3-IT1 Gene

SuperPathways for HS1BP3-IT1 Gene

No Data Available

Interacting Proteins for HS1BP3-IT1 Gene

Gene Ontology (GO) - Biological Process for HS1BP3-IT1 Gene

None

No data available for Pathways by source for HS1BP3-IT1 Gene

Transcripts for HS1BP3-IT1 Gene

mRNA/cDNA for HS1BP3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HS1BP3-IT1 Gene

No ASD Table

Relevant External Links for HS1BP3-IT1 Gene

GeneLoc Exon Structure for
HS1BP3-IT1
ECgene alternative splicing isoforms for
HS1BP3-IT1

Expression for HS1BP3-IT1 Gene

mRNA expression in normal human tissues for HS1BP3-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HS1BP3-IT1 Gene

This gene is overexpressed in Liver (19.7).
genes like me logo Genes that share expressions with HS1BP3-IT1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HS1BP3-IT1 Gene

Orthologs for HS1BP3-IT1 Gene

Evolution for HS1BP3-IT1 Gene

ENSEMBL:
Gene Tree for HS1BP3-IT1 (if available)
TreeFam:
Gene Tree for HS1BP3-IT1 (if available)

No data available for Orthologs for HS1BP3-IT1 Gene

Paralogs for HS1BP3-IT1 Gene

No data available for Paralogs for HS1BP3-IT1 Gene

Variants for HS1BP3-IT1 Gene

Sequence variations from dbSNP and Humsavar for HS1BP3-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs921599 -- 20,591,365(+) GTCTT(A/G)CTTGA intron-variant
rs4666434 -- 20,593,317(+) GTGCC(C/G)GCCTT upstream-variant-2KB
rs4666435 -- 20,594,471(+) AGAGA(C/T)GGCTC upstream-variant-2KB
rs6742583 -- 20,593,561(+) CCTCG(G/T)TTCTC upstream-variant-2KB
rs7558984 -- 20,592,016(+) GCATC(C/G)AGGCC intron-variant

Relevant External Links for HS1BP3-IT1 Gene

HapMap Linkage Disequilibrium report
HS1BP3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HS1BP3-IT1 Gene

Disorders for HS1BP3-IT1 Gene

No disorders were found for HS1BP3-IT1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HS1BP3-IT1 Gene

Publications for HS1BP3-IT1 Gene

No publications were found for HS1BP3-IT1 Gene.

Products for HS1BP3-IT1 Gene

Sources for HS1BP3-IT1 Gene

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