Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HS1BP3-IT1 Gene

Subcategory (RNA class) for HS1BP3-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HS1BP3-IT1 Gene

  • HS1BP3 Intronic Transcript 1 2 3 5
  • HS1BP3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HS1BP3-IT1 Gene

Previous GeneCards Identifiers for HS1BP3-IT1 Gene

  • GC00U933150
  • GC02M020791

Summaries for HS1BP3-IT1 Gene

GeneCards Summary for HS1BP3-IT1 Gene

HS1BP3-IT1 (HS1BP3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HS1BP3-IT1 Gene

Genomics for HS1BP3-IT1 Gene

Regulatory Elements for HS1BP3-IT1 Gene

Enhancers for HS1BP3-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G020566 2.5 VISTA FANTOM5 Ensembl ENCODE dbSUPER 5.9 +18.4 18441 14.5 MLX ZFP64 DMAP1 SLC30A9 NFYC TBX21 PPARGC1A MEF2D SSRP1 GLIS1 RHOB GDF7 ENSG00000228950 RNU6-961P HS1BP3-IT1 HS1BP3 ENSG00000269976 GC02P020545
GH02G020592 2 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.0 -4016 8.5 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF766 RHOB GDF7 ENSG00000228950 APOB HS1BP3 HS1BP3-IT1 RPS25P3
GH02G020590 1 Ensembl ENCODE dbSUPER 0.7 +1.3 1328 0.6 NCOR1 HNF4A RBFOX2 GDF7 ENSG00000269976 HS1BP3-IT1
GH02G020604 1 Ensembl ENCODE dbSUPER 0.4 -12.5 -12532 1.1 JUND NFE2 NFE2L2 RHOB ENSG00000228950 GDF7 RPS25P3 HS1BP3-IT1
GH02G020601 0.9 ENCODE dbSUPER 0.4 -8.8 -8831 0.5 BCOR SMARCA5 CTCF NFRKB ZNF175 RAD21 ZNF592 POLR2H ZFHX2 ZNF766 RHOB ENSG00000228950 GDF7 HS1BP3-IT1 RPS25P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HS1BP3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HS1BP3-IT1 Gene

Chromosome:
2
Start:
20,590,775 bp from pter
End:
20,592,548 bp from pter
Size:
1,774 bases
Orientation:
Minus strand

Genomic View for HS1BP3-IT1 Gene

Genes around HS1BP3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HS1BP3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HS1BP3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HS1BP3-IT1 Gene

Proteins for HS1BP3-IT1 Gene

Post-translational modifications for HS1BP3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HS1BP3-IT1 Gene

Domains & Families for HS1BP3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HS1BP3-IT1 Gene

Function for HS1BP3-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HS1BP3-IT1 Gene

Localization for HS1BP3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HS1BP3-IT1 Gene

Pathways & Interactions for HS1BP3-IT1 Gene

SuperPathways for HS1BP3-IT1 Gene

No Data Available

Interacting Proteins for HS1BP3-IT1 Gene

Gene Ontology (GO) - Biological Process for HS1BP3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HS1BP3-IT1 Gene

Transcripts for HS1BP3-IT1 Gene

mRNA/cDNA for HS1BP3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HS1BP3-IT1 Gene

No ASD Table

Relevant External Links for HS1BP3-IT1 Gene

GeneLoc Exon Structure for
HS1BP3-IT1
ECgene alternative splicing isoforms for
HS1BP3-IT1

Expression for HS1BP3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HS1BP3-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HS1BP3-IT1 Gene

This gene is overexpressed in Liver (x19.7).
genes like me logo Genes that share expression patterns with HS1BP3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HS1BP3-IT1 Gene

Orthologs for HS1BP3-IT1 Gene

Evolution for HS1BP3-IT1 Gene

ENSEMBL:
Gene Tree for HS1BP3-IT1 (if available)
TreeFam:
Gene Tree for HS1BP3-IT1 (if available)

No data available for Orthologs for HS1BP3-IT1 Gene

Paralogs for HS1BP3-IT1 Gene

No data available for Paralogs for HS1BP3-IT1 Gene

Variants for HS1BP3-IT1 Gene

Sequence variations from dbSNP and Humsavar for HS1BP3-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000181905 -- 20,594,390(+) CAAAT(C/T)CTTTT intron-variant, upstream-variant-2KB
rs1000486559 -- 20,593,100(+) TCCCC(C/G)CAGCA intron-variant, upstream-variant-2KB
rs1001077762 -- 20,593,246(+) TGCAA(A/C)CTTCC intron-variant, upstream-variant-2KB
rs1002768546 -- 20,593,745(+) GCAGG(A/G)AACTG intron-variant, upstream-variant-2KB
rs1002871742 -- 20,591,564(+) CTGGT(C/T)GACCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HS1BP3-IT1 Gene

Variant ID Type Subtype PubMed ID
dgv56n68 CNV loss 17160897
nsv581167 CNV gain 21841781

Relevant External Links for HS1BP3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HS1BP3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HS1BP3-IT1 Gene

Disorders for HS1BP3-IT1 Gene

Relevant External Links for HS1BP3-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HS1BP3-IT1

No disorders were found for HS1BP3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HS1BP3-IT1 Gene

Publications for HS1BP3-IT1 Gene

No publications were found for HS1BP3-IT1 Gene.

Products for HS1BP3-IT1 Gene

Sources for HS1BP3-IT1 Gene

Content
Loading form....