Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HRK Gene

Aliases for HRK Gene

  • Harakiri, BCL2 Interacting Protein 2 3 5
  • BH3-Interacting Domain-Containing Protein 3 3 4
  • Neuronal Death Protein DP5 3 4
  • Death Protein 5 2 3
  • Harakiri, BCL2-Interacting Protein (Contains Only BH3 Domain) 2
  • Harakiri, BCL2 Interacting Protein (Contains Only BH3 Domain) 3
  • Activator Of Apoptosis Harakiri 3
  • Activator Of Apoptosis Hrk 3
  • BCL2-Interacting Protein 3
  • HARAKIRI 3
  • BID3 4
  • DP5 3

External Ids for HRK Gene

Previous GeneCards Identifiers for HRK Gene

  • GC12M116138
  • GC12M117081
  • GC12M115710
  • GC12M115761
  • GC12M117299
  • GC12M114308
  • GC12M117303

Summaries for HRK Gene

Entrez Gene Summary for HRK Gene

  • This gene encodes a member of the BCL-2 protein family. Members of this family are involved in activating or inhibiting apoptosis. The encoded protein localizes to intracellular membranes. This protein promotes apoptosis by interacting with the apoptotic inhibitors BCL-2 and BCL-X(L) via its BH3 domain. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Oct 2012]

GeneCards Summary for HRK Gene

HRK (Harakiri, BCL2 Interacting Protein) is a Protein Coding gene. Diseases associated with HRK include Chronic Gonococcal Salpingitis and Corneal Abscess. Among its related pathways are Apoptosis and survival_Regulation of Apoptosis by Mitochondrial Proteins and ATF-2 transcription factor network.

UniProtKB/Swiss-Prot for HRK Gene

  • Promotes apoptosis.

Gene Wiki entry for HRK Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HRK Gene

Genomics for HRK Gene

Regulatory Elements for HRK Gene

Enhancers for HRK Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F116862 1.2 Ensembl ENCODE 8 +17.3 17314 2.5 CTCF PKNOX1 ZNF384 RAD21 ZEB1 HIC1 ZFHX2 ELK1 ZNF366 SMC3 HRK GC12P116862
GH12F116120 1.4 FANTOM5 Ensembl ENCODE 4.8 +757.8 757841 6.8 PKNOX1 ARNT MLX CREB3L1 SIN3A FEZF1 ZNF2 YY1 ZNF766 CBX5 FBXW8 MAP1LC3B2 MED13L MIR620 HRK GC12M116089 GC12P116137
GH12F116802 1.2 FANTOM5 ENCODE 3.1 +77.4 77405 3.0 ZNF121 RPL21P105 HRK C12orf49 ENSG00000275467 GC12M116856
GH12F116839 0.5 FANTOM5 1.5 +41.7 41686 0.1 ZFHX2 ZNF366 EGR2 NOS1 RNFT2 HRK GC12M116856 ENSG00000275467
GH12F116880 0.4 ENCODE 0.8 +0.3 321 0.8 SIN3A ZNF366 SCRT2 SMARCC1 ZEB2 GLIS1 PRDM1 MYC ZBTB26 SP7 FBXW8 HRK GC12P116862
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HRK on UCSC Golden Path with GeneCards custom track

Promoters for HRK Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000174187 241 801 ZNF366 SCRT2 SMARCC1 ZEB2 MAFF GLIS1 PRDM1 ZBTB26 MYC SP7

Genomic Location for HRK Gene

Chromosome:
12
Start:
116,856,144 bp from pter
End:
116,881,441 bp from pter
Size:
25,298 bases
Orientation:
Minus strand

Genomic View for HRK Gene

Genes around HRK on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HRK Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HRK Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HRK Gene

Proteins for HRK Gene

  • Protein details for HRK Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O00198-HRK_HUMAN
    Recommended name:
    Activator of apoptosis harakiri
    Protein Accession:
    O00198

    Protein attributes for HRK Gene

    Size:
    91 amino acids
    Molecular mass:
    9884 Da
    Quaternary structure:
    • Interacts with BCL2 and BCL2L1. Interacts with C1QBP.

    Three dimensional structures from OCA and Proteopedia for HRK Gene

neXtProt entry for HRK Gene

Post-translational modifications for HRK Gene

No Post-translational modifications

Other Protein References for HRK Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HRK Gene

Domains & Families for HRK Gene

Gene Families for HRK Gene

Protein Domains for HRK Gene

Suggested Antigen Peptide Sequences for HRK Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O00198

UniProtKB/Swiss-Prot:

HRK_HUMAN :
  • The BH3 motif is required for the induction of cell death.
Domain:
  • The BH3 motif is required for the induction of cell death.
genes like me logo Genes that share domains with HRK: view

Function for HRK Gene

Molecular function for HRK Gene

UniProtKB/Swiss-Prot Function:
Promotes apoptosis.

Gene Ontology (GO) - Molecular Function for HRK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 14596824
genes like me logo Genes that share ontologies with HRK: view
genes like me logo Genes that share phenotypes with HRK: view

Animal Model Products

miRNA for HRK Gene

miRTarBase miRNAs that target HRK

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HRK Gene

Localization for HRK Gene

Subcellular locations from UniProtKB/Swiss-Prot for HRK Gene

Membrane; Single-pass membrane protein. Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HRK Gene COMPARTMENTS Subcellular localization image for HRK gene
Compartment Confidence
mitochondrion 5
cytosol 2
nucleus 1

Gene Ontology (GO) - Cellular Components for HRK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA,IDA 15031724
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with HRK: view

Pathways & Interactions for HRK Gene

genes like me logo Genes that share pathways with HRK: view

Pathways by source for HRK Gene

1 GeneTex pathway for HRK Gene
1 KEGG pathway for HRK Gene
1 GeneGo (Thomson Reuters) pathway for HRK Gene
1 Qiagen pathway for HRK Gene

SIGNOR curated interactions for HRK Gene

Inactivates:

Gene Ontology (GO) - Biological Process for HRK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006915 apoptotic process IEA --
GO:0032464 positive regulation of protein homooligomerization IDA 21041309
GO:0042981 regulation of apoptotic process IEA --
GO:0043065 positive regulation of apoptotic process IMP 15031724
GO:0090200 positive regulation of release of cytochrome c from mitochondria IDA 21041309
genes like me logo Genes that share ontologies with HRK: view

Drugs & Compounds for HRK Gene

(1) Drugs for HRK Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with HRK: view

Transcripts for HRK Gene

mRNA/cDNA for HRK Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(18) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HRK Gene

Harakiri, BCL2 interacting protein (contains only BH3 domain):
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HRK Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5
SP1:
SP2: - - -

Relevant External Links for HRK Gene

GeneLoc Exon Structure for
HRK
ECgene alternative splicing isoforms for
HRK

Expression for HRK Gene

mRNA expression in normal human tissues for HRK Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HRK Gene

This gene is overexpressed in Brain - Hippocampus (x9.5), Brain - Anterior cingulate cortex (BA24) (x7.6), Brain - Cortex (x5.8), Brain - Frontal Cortex (BA9) (x5.5), and Pituitary (x4.7).

Protein differential expression in normal tissues from HIPED for HRK Gene

This gene is overexpressed in Plasma (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for HRK Gene



Protein tissue co-expression partners for HRK Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of HRK Gene:

HRK

SOURCE GeneReport for Unigene cluster for HRK Gene:

Hs.87247
genes like me logo Genes that share expression patterns with HRK: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for HRK Gene

Orthologs for HRK Gene

This gene was present in the common ancestor of mammals.

Orthologs for HRK Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HRK 34 35
  • 100 (n)
dog
(Canis familiaris)
Mammalia HRK 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia HRK 34 35
  • 96.34 (n)
oppossum
(Monodelphis domestica)
Mammalia HRK 35
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hrk 35
  • 73 (a)
OneToOne
Species where no ortholog for HRK was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HRK Gene

ENSEMBL:
Gene Tree for HRK (if available)
TreeFam:
Gene Tree for HRK (if available)

Paralogs for HRK Gene

No data available for Paralogs for HRK Gene

Variants for HRK Gene

Sequence variations from dbSNP and Humsavar for HRK Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10507275 -- 116,856,699(+) GGGAC(A/G)ACCTC utr-variant-3-prime
rs10626141 -- 116,859,639(+) TTTTT(-/T/TT)GGTTT utr-variant-3-prime
rs10682657 -- 116,866,173(+) AAAAA(-/AAA)AAGCA intron-variant
rs10718774 -- 116,860,726(+) AAAAA(-/A)GAATC nc-transcript-variant, utr-variant-3-prime
rs10850727 -- 116,871,480(+) TTCTA(C/T)TTTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HRK Gene

Variant ID Type Subtype PubMed ID
nsv1143710 CNV deletion 24896259
nsv826522 CNV gain 20364138
nsv832524 CNV gain 17160897
nsv898 CNV insertion 18451855

Variation tolerance for HRK Gene

Gene Damage Index Score: 0.29; 6.44% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HRK Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HRK

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HRK Gene

Disorders for HRK Gene

MalaCards: The human disease database

(4) MalaCards diseases for HRK Gene - From: DISEASES

Disorder Aliases PubMed IDs
chronic gonococcal salpingitis
  • gonococcal salpingitis
corneal abscess
chronic salpingitis
acute salpingitis
- elite association - COSMIC cancer census association via MalaCards
Search HRK in MalaCards View complete list of genes associated with diseases

Relevant External Links for HRK

Genetic Association Database (GAD)
HRK
Human Genome Epidemiology (HuGE) Navigator
HRK
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HRK
genes like me logo Genes that share disorders with HRK: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HRK Gene

Publications for HRK Gene

  1. Harakiri, a novel regulator of cell death, encodes a protein that activates apoptosis and interacts selectively with survival-promoting proteins Bcl-2 and Bcl-X(L). (PMID: 9130713) Inohara N. … Nunez G. (EMBO J. 1997) 2 3 4 64
  2. Identification of common variants associated with human hippocampal and intracranial volumes. (PMID: 22504417) Stein J.L. … Thompson P.M. (Nat. Genet. 2012) 3 46 64
  3. Common variants at 12q14 and 12q24 are associated with hippocampal volume. (PMID: 22504421) Bis J.C. … Seshadri S. (Nat. Genet. 2012) 3 46 64
  4. Intrinsic order and disorder in the BCL-2 member harakiri: insights into its proapoptotic activity. (PMID: 21731739) Barrera-Vilarmau S. … de Alba E. (PLoS ONE 2011) 3 4 64
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64

Products for HRK Gene

Sources for HRK Gene

Content
Loading form....