Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

HRG Gene

protein-coding   GIFtS: 61
GCID: GC03P186378

histidine-rich glycoprotein

 Explore 22 diseases affiliated with
HRG via our new
 Human Malady Compendium 
Biological research products
for HRG
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Histidine-Rich Glycoprotein1 2
HPRG1 2 3
HRGP1 2
Histidine-Proline-Rich Glycoprotein2 3
THPH112

External Ids:    HGNC: 51811   Entrez Gene: 32732   Ensembl: ENSG000001139057   OMIM: 1426405   UniProtKB: P041963   

Export aliases for HRG gene to outside databases

Previous GC identifers: GC03P183155 GC03P187640 GC03P187785 GC03P187704 GC03P187866 GC03P183793


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for HRG:
This histidine-rich glycoprotein contains two cystatin-like domains and is located in plasma and platelets. The
physiological function has not been determined but it is known that the protein binds heme, dyes and divalent metal
ions. It can inhibit rosette formation and interacts with heparin, thrombospondin and plasminogen. Two of the
protein's effects, the inhibition of fibrinolysis and the reduction of inhibition of coagulation, indicate a potential
prothrombotic effect. Mutations in this gene lead to thrombophilia due to abnormal histidine-rich glycoprotein levels.
(provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: HRG_HUMAN, P04196
Function: Plasma glycoprotein that binds a number of ligands such as heme, heparin, heparan sulfate, thrombospondin,
plasminogen, and divalent metal ions. Binds heparin and heparin/glycosaminoglycans in a zinc-dependent manner. Binds
heparan sulfate on the surface of liver, lung, kidney and heart endothelial cells. Binds to N-sulfated polysaccharide
chains on the surface of liver endothelial cells. Inhibits rosette formation. Acts as an adapter protein and is
implicated in regulating many processes such as immune complex and pathogen clearance, cell chemotaxis, cell adhesion,
angiogenesis, coagulation and fibrinolysis. Mediates clearance of necrotic cells through enhancing the phagocytosis of
necrotic cells in a heparan sulfate-dependent pathway. This process can be regulated by the presence of certain HRG
ligands such as heparin and zinc ions. Binds to IgG subclasses of immunoglobins containing kappa and lambda light
chains with different affinities regulating their clearance and inhibiting the formation of insoluble immune
complexes. Tethers plasminogen to the cell surface. Binds T-cells and alters the cell morphology. Modulates
angiogenesis by blocking the CD6-mediated antiangiongenic effect of thrombospondins, THBS1 and THBS2. Acts as a
regulator of the vascular endothelial growth factor (VEGF) signaling pathway; inhibits endothelial cell motility by
reducing VEGF-induced complex formation between PXN/paxillin and ILK/integrin-linked protein kinase and by promoting
inhibition of VEGF-induced tyrosine phosphorylation of focal adhesion kinases and alpha-actinins in endothelial cells.
Also plays a role in the regulation of tumor angiogenesis and tumor immune surveillance. Normalizes tumor vessels and
promotes antitumor immunity by polarizing tumor-associated macrophages, leading to decreased tumor growth and
metastasis

Gene Wiki entry for HRG


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NC_018914.1  NT_005612.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the HRG gene promoter:
         TBP   p53   FOXF2   HSF1 (long)   NF-kappaB   Evi-1   AREB6   HSF1short   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidHRG promoter sequence
   Search SABiosciences Chromatin IP Primers for HRG

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HRG


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q27   Ensembl cytogenetic band:  3q27.3   HGNC cytogenetic band: 3q27

HRG Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HRG gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P186378:  view genomic region     (about GC identifiers)

Start:
186,378,005 bp from pter      End:
186,396,029 bp from pter
Size:
18,025 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: HRG_HUMAN, P04196 (See protein sequence)
Recommended Name: Histidine-rich glycoprotein precursor  
Size: 525 amino acids; 59578 Da
Cofactor: Zinc
Subunit: Interacts (via the HRR domain) with TPM1; the interaction appears to contribute to the antiangiogenic
properties of the HRR domain. Interacts with THBS2; the interaction blocks the antiangiogenic effect of THBS2 with
CD36 (By similarity). Interacts with THBS1 (via the TSP type I repeats); the interaction blocks the antiangiogenic
effect of THBS1 with CD3. Interacts with PLG (via its Kringle domains); the interaction tethers PLG to the cell
surface and enhances its activation. Interacts with HPSE; the interaction is enhanced at acidic pH, partially inhibits
binding of HPSE to cell surface receptors and modulates its enzymatic activity. Interacts (via the HRR domain) with
TMP1; the interaction partially mediates the antiangiogenic properties of HRG. Interacts with kappa and lambda light
chains of IgG molecules. Interacts with ATP5A1; the interaction occurs on the surface of T-cells and alters their cell
morphology in concert with CONA. Binds IgG molecules containing kappa and lambda light chains and inhibits the
formation of insoluble immunoglobulin complexes. Interacts with F12; the interaction, which is enhanced in the
presence of zinc ions and inhibited by heparin-binding to HRG, inhibits factor XII autoactivation and
contact-initiated coagulation
Subcellular location: Secreted
Secondary accessions: B9EK35 D3DNU7

Explore the universe of human proteins at neXtProt for HRG: NX_P04196

Post-translational modifications:

  • Proteolytic cleavage produces several HRG fragments which are mostly disulfide-linked and, therefore, not released.
  • Cleavage by plasmin is inhibited in the presence of heparin, zinc ions or in an acidic environment. Cleavage reduces
    binding of HRG to heparan sulfate, but enhances the ability of HRG to bind and tether plasminogen to the cell surface.
    On platelet activation, releases a 33 kDa antiangiogenic peptide which encompasses the HRR. Also cleaved in the
    C-terminal by plasmin1
  • N-glycosylated1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P04196

  • HRG Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_000403.1  
    ENSEMBL proteins: 
     ENSP00000232003  
    Reactome Protein details: P04196
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    R&D Systems Recombinant & Natural Proteins for HRG (HPRG)
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: HRG
    OriGene Protein Over-expression Lysate: HRG
    OriGene Custom Protein Services for HRG 
    GenScript Custom Purified and Recombinant Proteins Services for HRG
    Novus Biologicals HRG Protein
    Novus Biologicals HRG Lysates
    Sino Biological Recombinant Protein for HRG
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for HRG

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region TAS--
    GO:0005886plasma membrane TAS--
    GO:0031093platelet alpha granule lumen TAS--


    HRG for ontologies           About GeneDecksing



    HRG Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    R&D Systems Antibodies for HRG (HPRG)
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for HRG 
    GenScript Custom Superior Antibodies Services for HRG
    Novus Biologicals HRG Antibodies
    Abcam antibodies for HRG 
    Uscn Antibodies for HRG
    ThermoFisher Antibodies for HRG

    Assay Products for HRG: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    R&D Systems Multiplex/Array Assay Kits & Reagents for HRG (HPRG)
    GenScript Custom Assay Services for HRG
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for HRG


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    HRG for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR000010 Prot_inh_cystat

    Graphical View of Domain Structure for InterPro Entry P04196

    ProtoNet protein and cluster: P04196

    1 Blocks protein family: IPB000010 Cysteine protease inhibitor

    UniProtKB/Swiss-Prot: HRG_HUMAN, P04196
    Domain: The His/Pro-rich (HRR) region contains approximately 12 tandem internal repeats of the 5-residue G[H/P][H/P]PH
    consensus sequence. HRR binds heparan sulfate and possesses antiangiogenic, antibacterial and antifungal properties
    through binding Candida cells, and preferentially lysing the ergosterol-containing liposomes at low pH. The tandem
    repeats also bind divalent metal ions and heme
    Domain: The cystatin domains can also bind heparan sulfate. Binding is enhanced in the presence of zinc ions
    Similarity: Contains 2 cystatin domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: HRG_HUMAN, P04196
    Function: Plasma glycoprotein that binds a number of ligands such as heme, heparin, heparan sulfate, thrombospondin,
    plasminogen, and divalent metal ions. Binds heparin and heparin/glycosaminoglycans in a zinc-dependent manner. Binds
    heparan sulfate on the surface of liver, lung, kidney and heart endothelial cells. Binds to N-sulfated polysaccharide
    chains on the surface of liver endothelial cells. Inhibits rosette formation. Acts as an adapter protein and is
    implicated in regulating many processes such as immune complex and pathogen clearance, cell chemotaxis, cell adhesion,
    angiogenesis, coagulation and fibrinolysis. Mediates clearance of necrotic cells through enhancing the phagocytosis of
    necrotic cells in a heparan sulfate-dependent pathway. This process can be regulated by the presence of certain HRG
    ligands such as heparin and zinc ions. Binds to IgG subclasses of immunoglobins containing kappa and lambda light
    chains with different affinities regulating their clearance and inhibiting the formation of insoluble immune
    complexes. Tethers plasminogen to the cell surface. Binds T-cells and alters the cell morphology. Modulates
    angiogenesis by blocking the CD6-mediated antiangiongenic effect of thrombospondins, THBS1 and THBS2. Acts as a
    regulator of the vascular endothelial growth factor (VEGF) signaling pathway; inhibits endothelial cell motility by
    reducing VEGF-induced complex formation between PXN/paxillin and ILK/integrin-linked protein kinase and by promoting
    inhibition of VEGF-induced tyrosine phosphorylation of focal adhesion kinases and alpha-actinins in endothelial cells.
    Also plays a role in the regulation of tumor angiogenesis and tumor immune surveillance. Normalizes tumor vessels and
    promotes antitumor immunity by polarizing tumor-associated macrophages, leading to decreased tumor growth and
    metastasis

         Genatlas biochemistry entry for HRG:
    histidine-rich glycoprotein (plasma),binding plasminogen and heparin,cystatin (cysteine proteinase inhibitor)
    superfamily,interacting with plasma proteins involved in blood coagulation and fibronolysis

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: HRG
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat HRG
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate HRG
    SwitchGear 3'UTR luciferase reporter plasmidHRG 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for HRG (see all 7)
    OriGene shRNA RFP: HRG
    OriGene siRNA: HRG
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat HRG

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for HRG

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for HRG (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for HRG
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: HRG (NM_000412)
    Sino Biological Human cDNA Clone for HRG
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for HRG
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat HRG 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for HRG
    Search LifeMap BioReagents cell lines for HRG

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HRG

    Gene Ontology (GO): 5/10 molecular function terms (GO ID links to tree view) (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004867serine-type endopeptidase inhibitor activity IEA--
    GO:0004869cysteine-type endopeptidase inhibitor activity IEA--
    GO:0005515protein binding IPI--
    GO:0008201heparin binding IDA16436387
    GO:0008270zinc ion binding IDA16436387


    HRG for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for HRG:
     Synthetic lethal with Ras 

    Animal Models:
         Mouse knock-out Hrgtm1Wja for HRG
         3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Hrg):
     hematopoietic system  homeostasis/metabolism  immune system 

    HRG for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Platelet degranulation
    Platelet degranulation 1.00
    Response to elevated platelet cytosolic Ca2+0.94
    2Platelet activation, signaling and aggregation
    Platelet activation, signaling and aggregation1.00
    Hemostasis0.43
    3Expression of PAI-1
    Dissolution of Fibrin Clot0.10

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    5        Reactome Pathways for HRG
        Hemostasis
    Platelet degranulation
    Dissolution of Fibrin Clot
    Platelet activation, signaling and aggregation
    Response to elevated platelet cytosolic Ca2+



    HRG for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for HRG

    STRING Interaction Network Preview (showing 5 interactants - click image to see 14)

    5/17 Interacting proteins for HRG (P041961, 3 ENSP000002320034) via UniProtKB, MINT, STRING, and/or I2D (see all 17)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    C1QBP027463, ENSP000003139674I2D: score=2 STRING: ENSP00000313967
    FGAP026713, ENSP000003063614I2D: score=2 STRING: ENSP00000306361
    C1QAP027453, ENSP000003637734I2D: score=1 STRING: ENSP00000363773
    FCGR1AP123143, ENSP000003581654I2D: score=2 STRING: ENSP00000358165
    PLGP007473, ENSP000003089384I2D: score=1 STRING: ENSP00000308938
    About this table

    Gene Ontology (GO): 5/27 biological process terms (GO ID links to tree view) (see all 27):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001525angiogenesis IEA--
    GO:0002576platelet degranulation TAS--
    GO:0002839positive regulation of immune response to tumor cell IDA--
    GO:0006935chemotaxis IEA--
    GO:0007162negative regulation of cell adhesion IDA14744774


    HRG for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    HRG for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for HRG

    1 HMDB Compound for HRG    About this table
    CompoundSynonyms CAS #PubMed Ids
    Heme(protoporphyrinato)iron (see all 19)14875-96-8--
    10/22 Novoseek chemical compound relationships for HRG gene (see all 22)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    kininogen 78.1 25 19273244 (2), 17655823 (1), 11204593 (1), 2107324 (1) (see all 10)
    heparin 60 92 19786011 (8), 9153200 (6), 12024108 (6), 9488672 (5) (see all 24)
    fibrinogen 58.6 28 19878090 (5), 8562978 (2), 8987550 (2), 15748207 (1) (see all 13)
    heparan sulfate 54.5 23 16436387 (3), 19712047 (2), 19903770 (1), 16107330 (1) (see all 8)
    dermatan sulfate 52.2 12 1554154 (5), 7833476 (1), 9488672 (1)
    histidine 51.9 27 19903770 (3), 7873529 (3), 9488672 (3), 1561009 (2) (see all 12)
    epsilon aminocaproic acid 47.7 7 10946092 (4), 9102401 (1)
    hydroxyproline 38.1 6 9512767 (4)
    zinc 36.5 65 9153200 (7), 11372684 (6), 8690451 (6), 12024108 (5) (see all 11)
    lysine 33.6 12 9102401 (2), 7873529 (2), 15220341 (1), 9488672 (1)

    Search CenterWatch for drugs/clinical trials and news about HRG 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for HRG gene: 
    NM_000412.2  

    Unigene Cluster for HRG:

    Histidine-rich glycoprotein
    Hs.1498  [show with all ESTs]
    Unigene Representative Sequence: CR749302
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000468154 ENST00000232003(uc003fqq.3) ENST00000495413

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: HRG
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat HRG
    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate HRG
    SwitchGear 3'UTR luciferase reporter plasmidHRG 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for HRG (see all 7)
    OriGene shRNA RFP: HRG
    OriGene siRNA: HRG
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat HRG
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for HRG (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for HRG
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: HRG (NM_000412)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for HRG
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat HRG 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for HRG
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat HRG
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat HRG
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat HRG

    Additional cDNA sequence: 

    AK313381.1 BC069574.1 BC150591.1 CR749302.1 

    8 DOTS entries:

    DT.455089  DT.92428066  DT.92428064  DT.100779786  DT.92428061  DT.95158654  DT.92428065  DT.95158651 

    24/106 AceView cDNA sequences (see all 106):

    CB156959 BC069574 CB115410 NM_000412 C21004 AV651187 T55861 N68297 
    T69219 T74779 CB153786 T55912 BI517904 AV651674 CR749302 AV650546 
    T67251 CB163837 H97733 AI378312 T39993 AI033102 BX955758 R96642 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    HRG expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TTTTTTACAC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See HRG Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for HRG

    SOURCE GeneReport for Unigene cluster: Hs.1498

    UniProtKB/Swiss-Prot: HRG_HUMAN, P04196
    Tissue specificity: Expressed in macrophages and in malignant cells. Expressed by the liver and secreted in plasma (at
    protein level)

        SABiosciences Expression via Pathway-Focused PCR Array including HRG: 
              Molecular Toxicology PathwayFinder 384HT in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for HRG
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat HRG
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat HRG
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat HRG
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HRG

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for HRG gene from 4/10 species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Hrg1 , 5 histidine-rich glycoprotein1, 5 74.02(n)1
    63.48(a)1
      16 (13.79 cM)5
    941751  NM_053176.21  NP_444406.21 
     229510725 
    chicken
    (Gallus gallus)
    Aves HRG1 histidine-rich glycoprotein 53.59(n)
    39.78(a)
      770588  XM_001233924.1  XP_001233925.1 
    lizard
    (Anolis carolinensis)
    Reptilia HRG6
    --
    24(a)
    1 ↔ 1
    GL343321.1(176818-194507)
    zebrafish
    (Danio rerio)
    Actinopterygii fetub6
    si:ch211-284e20.86
    si:ch211-284e20.8
    23(a)
    22(a)
    many ↔ many
    many ↔ many
    22(40848397-40858664)
    22(41188535-41199382)


    ENSEMBL Gene Tree for HRG (if available)
    TreeFam Gene Tree for HRG (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for HRG gene
    1 SIMAP similar gene for HRG using alignment to 1 protein entry:     HRG_HUMAN:
    DKFZp779H1622

    HRG for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for HRG
    PGOHUM00000238292 PGOHUM00000238293


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/349 NCBI SNPs in HRG are shown (see all 349    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2011511951,2
    C,other199053063(+) ATTTCC/TAAGAC 2 Q * stg11Minor allele frequency- T:0.00EU 1269
    rs1136564531,2
    C,--183791772(+) ATTGGG/ATATTT 1 -- us2k11Minor allele frequency- A:0.50NA 2
    rs746300961,2
    F,--183791836(+) TGTTGC/TACTCA 1 -- us2k11Minor allele frequency- T:0.02WA 118
    rs781408701,2
    F,--183791970(+) ACACAC/ATGGAT 1 -- us2k11Minor allele frequency- A:0.05NA 120
    rs730614691,2
    C,--183792991(+) GACAGC/GCTCTT 1 -- us2k12Minor allele frequency- G:0.07WA 120
    rs763163261,2
    C,F,--183793050(+) TAACAT/GGTTCC 1 -- us2k11Minor allele frequency- G:0.03WA 118
    rs753884201,2
    --183793058(+) TCCCCC/TGCTTA 1 -- us2k11Minor allele frequency- T:0.01NA 120
    rs789540481,2
    C,--183793381(+) CCCTCA/GGTTAC 1 -- us2k11Minor allele frequency- G:0.01NA 120
    rs1146367491,2
    C,F,--183793849(+) GTTATT/CAGTGT 1 -- int11Minor allele frequency- C:0.03WA 118
    rs117080081,2
    C,F,A,H,--183793859(+) TACCCG/ACAACT 1 -- int116Minor allele frequency- A:0.10EA NS NA WA 1998

    HapMap Linkage Disequilibrium report for HRG (186378005 - 186396029 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 7 variations for HRG
         7 CNVs: 1380 63680 2488 3467 1656 10027 51029
    Human Gene Mutation Database (HGMD): HRG

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing HRG
    DNA2.0 Custom Variant and Variant Library Synthesis for HRG

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    HRG for disorders           About GeneDecksing

    OMIM gene information: 142640   
    OMIM disorders: 613116  
    UniProtKB/Swiss-Prot: HRG_HUMAN, P04196
  • Defects in HRG are the cause of thrombophilia due to histidine-rich glycoprotein deficiency (THPH11)
  • [MIM:613116]. A hemostatic disorder characterized by a tendency to thrombosis

    20/22 diseases for HRG (see all 22):    About MalaCards
    thrombophilia    thrombophilia due to elevated hrg    thrombophilia due to hrg deficiency    protein c deficiency
    graft versus host disease    corneal neovascularization    retinal vein occlusion    myocardial infarction
    venous thrombosis    hyperhomocysteinemia    rheumatoid arthritis    thrombosis
    thromboembolism    nephrotic syndrome    diabetes mellitus    hepatitis b
    arthritis    twinning    retinitis    hepatitis

    10/13 Novoseek disease relationships for HRG gene (see all 13)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    thrombophilia 51.4 6 8475479 (1), 9575605 (1), 10650845 (1), 14517486 (1) (see all 6)
    protein c deficiency 49.5 3 10650849 (1)
    corneal neovascularization 41.1 1 11134179 (1)
    thrombosis 24.6 13 7772521 (4), 8475479 (1), 9414276 (1)
    hyperhomocysteinemia 17 1 10650845 (1)
    thromboembolism 7.97 1 8478593 (1)
    venous thrombosis 6.49 3 8478593 (1), 10650849 (1)
    myocardial infarction 0 2 9493591 (1)
    inflammation 0 5 2127808 (3), 16767790 (1), 7504980 (1)
    acute myocardial infarction 0 2 1893056 (2)

    Genatlas disease: HRG
    thrombophilia,with low histidine-rich glycoprotein level

    Human Genome Epidemiology (HuGE) Navigator: HRG (106 documents)

    Export disorders for HRG gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for HRG gene, integrated from 9 sources (see all 167):
    (articles sorted by number of sources associating them with HRG)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Regulation of histidine-rich glycoprotein (HRG) funct ion via plasmin-mediated proteolytic cleavage. (PubMed id 19712047)1, 2, 9 Poon I.K....Parish C.R. (2009)
    2. Differential binding of histidine-rich glycoprotein (HRG) to human IgG subclasses and IgG molecules containing kappa and lambda light chains. (PubMed id 10514432)1, 2, 9 Gorgani N.N....Altin J.G. (1999)
    3. HRG Tokushima: molecular and cellular characterization of histidine- rich glycoprotein (HRG) deficiency. (PubMed id 9414276)1, 2, 9 Shigekiyo T.... Koide T. (1998)
    4. A fragment of histidine-rich glycoprotein is a potent inhibitor of tumor vascularization. (PubMed id 14744774)1, 2, 9 Olsson A.K....Claesson-Welsh L. (2004)
    5. Histidine-rich glycoprotein inhibits the antiangiogenic effect of thrombospondin-1. (PubMed id 11134179)1, 2, 9 Simantov R....Silverstein R.L. (2001)
    6. Plasminogen is tethered with high affinity to the cell surface by the plasma protein, histidine-rich glycoprotein. (PubMed id 15220341)1, 2, 9 Jones A.L....Parish C.R. (2004)
    7. High affinity interaction between histidine-rich glycoprotein and the cell surface type ATP synthase on T-cells. (PubMed id 19285951)1, 2, 9 Ohta T....Wakabayashi S. (2009)
    8. Activated platelets provide a functional microenviron ment for the antiangiogenic fragment of histidine-rich glycoprotein. (PubMed id 19903770)1, 2, 9 Thulin A....Olsson A.K. (2009)
    9. The anti-angiogenic His/Pro-rich fragment of histidine-rich glycoprotein binds to endothelial cell heparan sulfate in a Zn2+-dependent manner. (PubMed id 16436387)1, 2, 9 Vanwildemeersch M....Spillmann D. (2006)
    10. Evidence for the absence of intron H of the histidine-rich glycoprotein (HRG) gene: genetic mapping and in situ localization of HRG to chromosome 3q28-q29. (PubMed id 8188234)1, 2, 9 Hennis B.C.... Kluft C. (1994)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 3273 HGNC: 5181 AceView: HRG Ensembl:ENSG00000113905 euGenes: HUgn3273
    ECgene: HRG H-InvDB: HRG

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for HRG Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for HRG gene:
    Search GeneIP for patents involving HRG

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for HRG (HPRG)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Multiplex/Array Assay Kits/Reagents for HRG (HPRG)  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Recombinant/Natural Proteins for HRG (HPRG)  
     Browse OriGene Antibodies   OriGene shRNA RFP for HRG  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for HRG   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for HRG  
     OriGene Protein Over-expression Lysate for HRG   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for HRG   OriGene 3'-UTR Clone for HRG  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for HRG   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for HRG  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for HRG   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for HRG   OriGene Custom Protein Services for HRG  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HRG
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing HRG
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HRG
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat HRG
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat HRG
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat HRG
     GenScript Custom Purified and Recombinant Proteins Services for HRG GenScript cDNA clones with any tag delivered in your preferred vector for HRG
     GenScript Custom Assay Services for HRG GenScript Custom Superior Antibodies Services for HRG
     GenScript Custom overexpressing Cell Line Services for HRG CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in HRG promoter
     Search Chromatin IP Primers for HRG
     RT2 qPCR Primer Assay in human, mouse, rat HRG
     GNC Network for HRG
     SABiosciences PCR Arrays including human, mouse, rat HRG
     Search Tocris compounds for HRG
     Proteins and Antibodies for HRG
     cDNA Clones for HRG
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     HRG antibodies
     HRG proteins
     HRG lysates
     Antibodies for HRG
     See all of Abcam's Antibodies, Kits and Proteins for HRG
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     HRG Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for HRG
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HRG
     SwitchGear 3'UTR luciferase reporter plasmids for HRG
     SwitchGear Promoter luciferase reporter plasmids for HRG
     ThermoFisher Antibodies for HRG
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat HRG
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      HRG gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4