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Aliases for HRC Gene

Aliases for HRC Gene

  • Histidine Rich Calcium Binding Protein 2 3
  • Histidine-Rich Calcium-Binding Protein 2
  • HCP 4

External Ids for HRC Gene

Previous GeneCards Identifiers for HRC Gene

  • GC19M050312
  • GC19M050022
  • GC19M054330
  • GC19M054346
  • GC19M049654
  • GC19M046030

Summaries for HRC Gene

Entrez Gene Summary for HRC Gene

  • This gene encodes a luminal sarcoplasmic reticulum protein identified by its ability to bind low-density lipoprotein with high affinity. The protein interacts with the cytoplasmic domain of triadin, the main transmembrane protein of the junctional sarcoplasmic reticulum (SR) of skeletal muscle. The protein functions in the regulation of releasable calcium into the SR. [provided by RefSeq, Sep 2008]

GeneCards Summary for HRC Gene

HRC (Histidine Rich Calcium Binding Protein) is a Protein Coding gene. Diseases associated with HRC include mixed glioma and arrhythmogenic right ventricular cardiomyopathy. GO annotations related to this gene include calcium ion binding and ATPase binding.

UniProtKB/Swiss-Prot for HRC Gene

  • May play a role in the regulation of calcium sequestration or release in the SR of skeletal and cardiac muscle

Gene Wiki entry for HRC Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HRC Gene

Genomics for HRC Gene

Regulatory Elements for HRC Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for HRC Gene

Start:
49,151,198 bp from pter
End:
49,155,429 bp from pter
Size:
4,232 bases
Orientation:
Minus strand

Genomic View for HRC Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HRC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HRC Gene

Proteins for HRC Gene

  • Protein details for HRC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P23327-SRCH_HUMAN
    Recommended name:
    Sarcoplasmic reticulum histidine-rich calcium-binding protein
    Protein Accession:
    P23327
    Secondary Accessions:
    • Q504Y6

    Protein attributes for HRC Gene

    Size:
    699 amino acids
    Molecular mass:
    80244 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HRC Gene

Proteomics data for HRC Gene at MOPED

Post-translational modifications for HRC Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HRC Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HRC Gene

Domains for HRC Gene

Protein Domains for HRC Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

P23327

UniProtKB/Swiss-Prot:

SRCH_HUMAN :
  • P23327
Family:
  • Belongs to the HRC family.
genes like me logo Genes that share domains with HRC: view

No data available for Gene Families for HRC Gene

Function for HRC Gene

Molecular function for HRC Gene

GENATLAS Biochemistry: histidine-rich calcium binding protein (sarcoplasmic reticulum,luminal)
UniProtKB/Swiss-Prot Function: May play a role in the regulation of calcium sequestration or release in the SR of skeletal and cardiac muscle

Gene Ontology (GO) - Molecular Function for HRC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IDA 24125847
GO:0005515 protein binding IPI 17526652
GO:0044325 ion channel binding IPI 17526652
GO:0051117 ATPase binding IPI 17526652
genes like me logo Genes that share ontologies with HRC: view
genes like me logo Genes that share phenotypes with HRC: view

Animal Models for HRC Gene

MGI Knock Outs for HRC:

Animal Model Products

CRISPR Products

miRNA for HRC Gene

miRTarBase miRNAs that target HRC

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HRC

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for HRC Gene

Localization for HRC Gene

Subcellular locations from UniProtKB/Swiss-Prot for HRC Gene

Sarcoplasmic reticulum lumen.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HRC Gene COMPARTMENTS Subcellular localization image for HRC gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 2
cytosol 1
lysosome 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for HRC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030018 Z disc IDA 24125847
GO:0033017 sarcoplasmic reticulum membrane IEA --
GO:0033018 sarcoplasmic reticulum lumen TAS 11504710
genes like me logo Genes that share ontologies with HRC: view

Pathways for HRC Gene

SuperPathways for HRC Gene

No Data Available

Interacting Proteins for HRC Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000252825%0d%0a9606.ENSP00000381240%0d%0a
Selected Interacting proteins: ENSP00000252825 P23327-SRCH_HUMAN for HRC Gene via STRING UniProtKB I2D

Gene Ontology (GO) - Biological Process for HRC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002027 regulation of heart rate IMP 18617481
GO:0006936 muscle contraction TAS 2037293
GO:0008016 regulation of heart contraction --
GO:0010460 positive regulation of heart rate IGI 24125847
GO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum IGI 24125847
genes like me logo Genes that share ontologies with HRC: view

No data available for Pathways by source for HRC Gene

Compounds for HRC Gene

(1) HMDB Compounds for HRC Gene

Compound Synonyms Cas Number PubMed IDs
Calcium
  • Ca
7440-70-2

(2) Novoseek inferred chemical compound relationships for HRC Gene

Compound -log(P) Hits PubMed IDs
ryanodine 63.9 3
calcium 39 12
genes like me logo Genes that share compounds with HRC: view

Transcripts for HRC Gene

mRNA/cDNA for HRC Gene

Unigene Clusters for HRC Gene

Histidine rich calcium binding protein:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HRC

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for HRC

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HRC Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6
SP1: -
SP2:

Relevant External Links for HRC Gene

GeneLoc Exon Structure for
HRC
ECgene alternative splicing isoforms for
HRC

Expression for HRC Gene

mRNA expression in normal human tissues for HRC Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HRC Gene

This gene is overexpressed in Heart - Left Ventricle (24.9), Heart - Atrial Appendage (12.0), and Muscle - Skeletal (10.9).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for HRC Gene

SOURCE GeneReport for Unigene cluster for HRC Gene Hs.436885

genes like me logo Genes that share expressions with HRC: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for HRC Gene

Orthologs for HRC Gene

This gene was present in the common ancestor of chordates.

Orthologs for HRC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HRC 35
  • 96.59 (n)
  • 94.07 (a)
HRC 36
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia HRC 35
  • 79.14 (n)
  • 68.39 (a)
HRC 36
  • 55 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HRC 36
  • 58 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hrc 16
Hrc 36
  • 48 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia HRC 36
  • 41 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii HRC 36
  • 30 (a)
OneToOne
Species with no ortholog for HRC:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HRC Gene

ENSEMBL:
Gene Tree for HRC (if available)
TreeFam:
Gene Tree for HRC (if available)

Paralogs for HRC Gene

No data available for Paralogs for HRC Gene

Variants for HRC Gene

Sequence variations from dbSNP and Humsavar for HRC Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs1423520 -- 49,151,917(+) AGCCT(A/G/T)CCGGG intron-variant, downstream-variant-500B
rs3217248 -- 49,153,101(+) AGCCT(-/TCA)TCAGT intron-variant
rs3745296 -- 49,154,077(+) TGGCC(A/G)AACTG reference, synonymous-codon, nc-transcript-variant
rs3745297 - 49,154,952(+) CTTGG(A/C)GACAT missense, reference, nc-transcript-variant
rs3745298 - 49,155,110(+) CAGTG(C/T)TGTTG missense, reference, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HRC Gene

Variant ID Type Subtype PubMed ID
nsv9739 CNV Gain+Loss 18304495
dgv3970n71 CNV Loss 21882294
nsv833859 CNV Loss 17160897
nsv912255 CNV Loss 21882294
nsv912258 CNV Loss 21882294
dgv3971n71 CNV Loss 21882294
nsv470149 CNV Loss 18288195
nsv524235 CNV Gain 19592680

Relevant External Links for HRC Gene

HapMap Linkage Disequilibrium report
HRC
Human Gene Mutation Database (HGMD)
HRC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HRC Gene

Disorders for HRC Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for HRC Gene including...

Search for HRC Gene in MalaCards »

(1) University of Copenhagen DISEASES for HRC Gene

(1) Novoseek inferred disease relationships for HRC Gene

Disease -log(P) Hits PubMed IDs
niddm 22.9 2

Relevant External Links for HRC

Genetic Association Database (GAD)
HRC
Human Genome Epidemiology (HuGE) Navigator
HRC
genes like me logo Genes that share disorders with HRC: view

No data available for UniProtKB/Swiss-Prot for HRC Gene

Publications for HRC Gene

  1. cDNA and genomic cloning of HRC, a human sarcoplasmic reticulum protein, and localization of the gene to human chromosome 19 and mouse chromosome 7. (PMID: 2037293) Hofmann S.L. … Francke U. (Genomics 1991) 2 3 4 23
  2. The Ser96Ala variant in histidine-rich calcium-binding protein is associated with life-threatening ventricular arrhythmias in idiopathic dilated cardiomyopathy. (PMID: 18617481) Arvanitis D.A. … Kranias E.G. (Eur. Heart J. 2008) 3 23 48
  3. Interaction of HRC (histidine-rich Ca(2+)-binding protein) and triadin in the lumen of sarcoplasmic reticulum. (PMID: 11504710) Lee H.G. … Park W.J. (J. Biol. Chem. 2001) 3 23
  4. Regulation of myocardial function by histidine-rich, calcium-binding protein. (PMID: 15191886) Fan G.C. … Kranias E.G. (Am. J. Physiol. Heart Circ. Physiol. 2004) 3 23
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for HRC Gene

Sources for HRC Gene

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