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Aliases for HPYR1 Gene

Subcategory (RNA class) for HPYR1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HPYR1 Gene

  • Helicobacter Pylori Responsive 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 27 2 3
  • Helicobacter Pylori Responsive 1 2
  • Non-Protein Coding RNA 27 2
  • NCRNA00027 3
  • LINC00027 3
  • HPRG1 3

External Ids for HPYR1 Gene

ORGUL Members for HPYR1 Gene

Previous GeneCards Identifiers for HPYR1 Gene

  • GC00U991037
  • GC08U900828
  • GC08M133572
  • GC08M128891

Summaries for HPYR1 Gene

GeneCards Summary for HPYR1 Gene

HPYR1 (Helicobacter Pylori Responsive 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HPYR1 Gene

Genomics for HPYR1 Gene

Regulatory Elements for HPYR1 Gene

Genomic Location for HPYR1 Gene

Start:
132,560,498 bp from pter
End:
132,561,479 bp from pter
Size:
982 bases
Orientation:
Minus strand

Genomic View for HPYR1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HPYR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPYR1 Gene

Proteins for HPYR1 Gene

Post-translational modifications for HPYR1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPYR1 Gene

Domains for HPYR1 Gene

Gene Families for HPYR1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HPYR1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HPYR1 Gene

Function for HPYR1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HPYR1 Gene

Localization for HPYR1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HPYR1 Gene

Pathways for HPYR1 Gene

SuperPathways for HPYR1 Gene

No Data Available

Interacting Proteins for HPYR1 Gene

Gene Ontology (GO) - Biological Process for HPYR1 Gene

None

No data available for Pathways by source for HPYR1 Gene

Transcripts for HPYR1 Gene

mRNA/cDNA for HPYR1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HPYR1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HPYR1 Gene

No ASD Table

Relevant External Links for HPYR1 Gene

GeneLoc Exon Structure for
HPYR1
ECgene alternative splicing isoforms for
HPYR1

Expression for HPYR1 Gene

mRNA expression in normal human tissues for HPYR1 Gene

mRNA differential expression in normal tissues according to GTEx for HPYR1 Gene

This gene is overexpressed in Brain - Cortex (6.9), Brain - Nucleus accumbens (basal ganglia) (5.5), Brain - Frontal Cortex (BA9) (5.4), and Brain - Caudate (basal ganglia) (4.9).

SOURCE GeneReport for Unigene cluster for HPYR1 Gene Hs.545218

genes like me logo Genes that share expressions with HPYR1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HPYR1 Gene

Orthologs for HPYR1 Gene

Evolution for HPYR1 Gene

ENSEMBL:
Gene Tree for HPYR1 (if available)
TreeFam:
Gene Tree for HPYR1 (if available)

No data available for Orthologs for HPYR1 Gene

Paralogs for HPYR1 Gene

No data available for Paralogs for HPYR1 Gene

Variants for HPYR1 Gene

Sequence variations from dbSNP and Humsavar for HPYR1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs1464119 -- 132,562,555(+) CTGAA(C/G)CACTC upstream-variant-2KB
rs1515521 -- 132,560,305(+) CACAG(G/T)GGTGG downstream-variant-500B
rs1515522 -- 132,560,451(+) aagca(A/G)aatca downstream-variant-500B
rs1965412 -- 132,563,204(+) ctcgg(A/G)aggct upstream-variant-2KB
rs4736596 -- 132,561,166(+) GCAGC(A/T)ATTGC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HPYR1 Gene

Variant ID Type Subtype PubMed ID
dgv2251e1 CNV Complex 17122850
dgv2252e1 CNV Complex 17122850
dgv2253e1 CNV Complex 17122850
nsv428206 CNV Gain 18775914

Relevant External Links for HPYR1 Gene

HapMap Linkage Disequilibrium report
HPYR1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HPYR1 Gene

Disorders for HPYR1 Gene

No disorders were found for HPYR1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HPYR1 Gene

Publications for HPYR1 Gene

  1. cDNA array analysis of cag pathogenicity island-associated Helicobacter pylori epithelial cell response genes. (PMID: 11598072) Cox J.M. … Crabtree J.E. (Infect. Immun. 2001) 3

Products for HPYR1 Gene

Sources for HPYR1 Gene

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