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Aliases for HPYR1 Gene

Subcategory (RNA class) for HPYR1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HPYR1 Gene

  • Helicobacter Pylori Responsive 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 27 2 3
  • Helicobacter Pylori Responsive 1 2
  • Non-Protein Coding RNA 27 2
  • NCRNA00027 3
  • LINC00027 3
  • HPRG1 3

External Ids for HPYR1 Gene

ORGUL Members for HPYR1 Gene

Previous GeneCards Identifiers for HPYR1 Gene

  • GC00U991037
  • GC08U900828
  • GC08M133572
  • GC08M128891

Summaries for HPYR1 Gene

GeneCards Summary for HPYR1 Gene

HPYR1 (Helicobacter Pylori Responsive 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HPYR1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HPYR1 Gene

Genomics for HPYR1 Gene

GeneHancer (GH) Regulatory Elements for HPYR1 Gene

Promoters and enhancers for HPYR1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I132674 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.1 -114.1 -114060 1.5 PKNOX1 ATF1 ARID4B SIN3A ZNF48 YY1 ELK1 ATF7 RUNX3 RXRA LRRC6 LOC105375767 HPYR1
GH08I132549 Enhancer 0.4 FANTOM5 0.4 +11.5 11523 0.3 ZNF512 HHLA1 KCNQ3 HPYR1 LOC105375765
GH08I132489 Enhancer 0.6 ENCODE 0.2 +71.8 71750 0.2 CTCF HLF TRIM22 REST RAD21 NFIL3 CTBP1 SMC3 LOC105375765 HPYR1
GH08I132651 Enhancer 0.6 ENCODE 0.2 -90.2 -90151 0.2 CTCF ZNF654 TRIM22 REST RAD21 SMC3 CREB1 ZNF143 ZNF444 LOC105375767 LRRC6 HPYR1
GH08I132587 Enhancer 0.3 FANTOM5 0.3 -26.2 -26229 0.2 TMEM71 HPYR1 LOC105375767 LRRC6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HPYR1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the HPYR1 gene promoter:

Genomic Locations for HPYR1 Gene

Genomic Locations for HPYR1 Gene
chr8:132,560,498-132,561,479
(GRCh38/hg38)
Size:
982 bases
Orientation:
Minus strand
chr8:133,572,745-133,573,726
(GRCh37/hg19)

Genomic View for HPYR1 Gene

Genes around HPYR1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HPYR1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HPYR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPYR1 Gene

Proteins for HPYR1 Gene

Post-translational modifications for HPYR1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPYR1 Gene

Domains & Families for HPYR1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HPYR1 Gene

Function for HPYR1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HPYR1 Gene

Localization for HPYR1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HPYR1 Gene

Pathways & Interactions for HPYR1 Gene

SuperPathways for HPYR1 Gene

No Data Available

Interacting Proteins for HPYR1 Gene

Gene Ontology (GO) - Biological Process for HPYR1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HPYR1 Gene

Drugs & Compounds for HPYR1 Gene

No Compound Related Data Available

Transcripts for HPYR1 Gene

mRNA/cDNA for HPYR1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HPYR1 Gene

No ASD Table

Relevant External Links for HPYR1 Gene

GeneLoc Exon Structure for
HPYR1
ECgene alternative splicing isoforms for
HPYR1

Expression for HPYR1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HPYR1 Gene

mRNA differential expression in normal tissues according to GTEx for HPYR1 Gene

This gene is overexpressed in Brain - Cortex (x6.9), Brain - Nucleus accumbens (basal ganglia) (x5.5), Brain - Frontal Cortex (BA9) (x5.4), and Brain - Caudate (basal ganglia) (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of HPYR1 Gene:

HPYR1

SOURCE GeneReport for Unigene cluster for HPYR1 Gene:

Hs.545218
genes like me logo Genes that share expression patterns with HPYR1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HPYR1 Gene

Orthologs for HPYR1 Gene

Evolution for HPYR1 Gene

ENSEMBL:
Gene Tree for HPYR1 (if available)
TreeFam:
Gene Tree for HPYR1 (if available)

No data available for Orthologs for HPYR1 Gene

Paralogs for HPYR1 Gene

No data available for Paralogs for HPYR1 Gene

Variants for HPYR1 Gene

Sequence variations from dbSNP and Humsavar for HPYR1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000082305 -- 132,561,223(-) C/T non_coding_transcript_variant
rs1000217445 -- 132,561,061(-) T/G non_coding_transcript_variant
rs1001272797 -- 132,560,064(-) T/A/G downstream_transcript_variant
rs1002992638 -- 132,563,424(-) G/T upstream_transcript_variant
rs1003762444 -- 132,560,105(-) A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HPYR1 Gene

Variant ID Type Subtype PubMed ID
esv2759642 CNV gain+loss 17122850
esv3618874 CNV loss 21293372
nsv428206 CNV gain 18775914

Additional Variant Information for HPYR1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HPYR1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HPYR1 Gene

Disorders for HPYR1 Gene

Additional Disease Information for HPYR1

No disorders were found for HPYR1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HPYR1 Gene

Publications for HPYR1 Gene

  1. cDNA array analysis of cag pathogenicity island-associated Helicobacter pylori epithelial cell response genes. (PMID: 11598072) Cox JM … Crabtree JE (Infection and immunity 2001) 3 58

Products for HPYR1 Gene

Sources for HPYR1 Gene

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