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Aliases for HPYR1 Gene

Subcategory (RNA class) for HPYR1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HPYR1 Gene

  • Helicobacter Pylori Responsive 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 27 2 3
  • Helicobacter Pylori Responsive 1 2
  • Non-Protein Coding RNA 27 2
  • NCRNA00027 3
  • LINC00027 3
  • HPRG1 3

External Ids for HPYR1 Gene

ORGUL Members for HPYR1 Gene

Previous GeneCards Identifiers for HPYR1 Gene

  • GC00U991037
  • GC08U900828
  • GC08M133572
  • GC08M128891

Summaries for HPYR1 Gene

GeneCards Summary for HPYR1 Gene

HPYR1 (Helicobacter Pylori Responsive 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for HPYR1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HPYR1 Gene

Genomics for HPYR1 Gene

Regulatory Elements for HPYR1 Gene

Enhancers for HPYR1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H132549 0.4 FANTOM5 0.4 +11.5 11524 0 ZNF512 HHLA1 KCNQ3 HPYR1 LOC105375765
GH08H132489 0.6 ENCODE 0.2 +71.8 71751 0 CTCF HLF TRIM22 REST RAD21 NFIL3 CTBP1 SMC3 LOC105375765 HPYR1
GH08H132651 0.6 ENCODE 0.2 -90.2 -90151 0 CTCF ZNF654 TRIM22 REST RAD21 CREB1 ZNF143 SMC3 LOC105375767 HPYR1
GH08H132507 0.5 FANTOM5 0.2 +53.7 53671 0 JUND NFE2 LOC105375765 HPYR1
GH08H132674 1 ENCODE 0.1 -114.1 -114145 1 PKNOX1 ATF1 ARID4B SIN3A YY1 ELK1 ATF7 RUNX3 MXD4 REST LRRC6 LOC105375767 HPYR1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HPYR1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HPYR1 Gene

Chromosome:
8
Start:
132,560,498 bp from pter
End:
132,561,479 bp from pter
Size:
982 bases
Orientation:
Minus strand

Genomic View for HPYR1 Gene

Genes around HPYR1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HPYR1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HPYR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPYR1 Gene

Proteins for HPYR1 Gene

Post-translational modifications for HPYR1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPYR1 Gene

Domains & Families for HPYR1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HPYR1 Gene

Function for HPYR1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HPYR1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HPYR1 Gene

Localization for HPYR1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HPYR1 Gene

Pathways & Interactions for HPYR1 Gene

SuperPathways for HPYR1 Gene

No Data Available

Interacting Proteins for HPYR1 Gene

Gene Ontology (GO) - Biological Process for HPYR1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HPYR1 Gene

Drugs & Compounds for HPYR1 Gene

No Compound Related Data Available

Transcripts for HPYR1 Gene

mRNA/cDNA for HPYR1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HPYR1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HPYR1 Gene

No ASD Table

Relevant External Links for HPYR1 Gene

GeneLoc Exon Structure for
HPYR1
ECgene alternative splicing isoforms for
HPYR1

Expression for HPYR1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HPYR1 Gene

mRNA differential expression in normal tissues according to GTEx for HPYR1 Gene

This gene is overexpressed in Brain - Cortex (x6.9), Brain - Nucleus accumbens (basal ganglia) (x5.5), Brain - Frontal Cortex (BA9) (x5.4), and Brain - Caudate (basal ganglia) (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of HPYR1 Gene:

HPYR1

SOURCE GeneReport for Unigene cluster for HPYR1 Gene:

Hs.545218
genes like me logo Genes that share expression patterns with HPYR1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HPYR1 Gene

Orthologs for HPYR1 Gene

Evolution for HPYR1 Gene

ENSEMBL:
Gene Tree for HPYR1 (if available)
TreeFam:
Gene Tree for HPYR1 (if available)

No data available for Orthologs for HPYR1 Gene

Paralogs for HPYR1 Gene

No data available for Paralogs for HPYR1 Gene

Variants for HPYR1 Gene

Sequence variations from dbSNP and Humsavar for HPYR1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000082305 -- 132,561,223(+) TGAGG(C/T)CAAGC nc-transcript-variant
rs1000217445 -- 132,561,061(+) CTGCC(G/T)TCCTA nc-transcript-variant
rs1001272797 -- 132,560,064(+) GAGCA(A/T)GTGCA downstream-variant-500B
rs1002992638 -- 132,563,424(+) GTGTG(G/T)CCGTT upstream-variant-2KB
rs1003762444 -- 132,560,105(+) GACTT(A/C)TTATC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HPYR1 Gene

Variant ID Type Subtype PubMed ID
esv2759642 CNV gain+loss 17122850
esv3618874 CNV loss 21293372
nsv428206 CNV gain 18775914

Relevant External Links for HPYR1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HPYR1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HPYR1 Gene

Disorders for HPYR1 Gene

Relevant External Links for HPYR1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HPYR1

No disorders were found for HPYR1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HPYR1 Gene

Publications for HPYR1 Gene

  1. cDNA array analysis of cag pathogenicity island-associated Helicobacter pylori epithelial cell response genes. (PMID: 11598072) Cox JM … Crabtree JE (Infection and immunity 2001) 3 60

Products for HPYR1 Gene

Sources for HPYR1 Gene

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