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Aliases for HPVC1 Gene

Subcategory (RNA class) for HPVC1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HPVC1 Gene

  • Human Papillomavirus (Type 18) E5 Central Sequence-Like 1 2 3 5
  • HPV18E5L 3
  • PE5L 3

External Ids for HPVC1 Gene

Previous GeneCards Identifiers for HPVC1 Gene

  • GC07U990051
  • GC07M054268

Summaries for HPVC1 Gene

GeneCards Summary for HPVC1 Gene

HPVC1 (Human Papillomavirus (Type 18) E5 Central Sequence-Like 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HPVC1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HPVC1 Gene

Genomics for HPVC1 Gene

Regulatory Elements for HPVC1 Gene

Enhancers for HPVC1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H054189 0.2 ENCODE 0.4 +12.9 12919 0 HPVC1 GC07M054202 GC07M054001
GH07H054147 0.3 FANTOM5 0.2 +55.0 55004 0 HPVC1 GC07M054202 GC07M054001
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HPVC1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HPVC1 Gene

Chromosome:
7
Start:
54,201,224 bp from pter
End:
54,202,421 bp from pter
Size:
1,198 bases
Orientation:
Minus strand

Genomic View for HPVC1 Gene

Genes around HPVC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HPVC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HPVC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPVC1 Gene

Proteins for HPVC1 Gene

Post-translational modifications for HPVC1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPVC1 Gene

Domains & Families for HPVC1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HPVC1 Gene

Function for HPVC1 Gene

Molecular function for HPVC1 Gene

GENATLAS Biochemistry:
human papilloma virus 18,E5-like gene,murine HC1 homolog

Phenotypes From GWAS Catalog for HPVC1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HPVC1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HPVC1 Gene

Localization for HPVC1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HPVC1 Gene

Pathways & Interactions for HPVC1 Gene

SuperPathways for HPVC1 Gene

No Data Available

Interacting Proteins for HPVC1 Gene

Gene Ontology (GO) - Biological Process for HPVC1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HPVC1 Gene

Drugs & Compounds for HPVC1 Gene

No Compound Related Data Available

Transcripts for HPVC1 Gene

mRNA/cDNA for HPVC1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HPVC1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HPVC1 Gene

No ASD Table

Relevant External Links for HPVC1 Gene

GeneLoc Exon Structure for
HPVC1
ECgene alternative splicing isoforms for
HPVC1

Expression for HPVC1 Gene

NURSA nuclear receptor signaling pathways regulating expression of HPVC1 Gene:

HPVC1

SOURCE GeneReport for Unigene cluster for HPVC1 Gene:

Hs.742598
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HPVC1 Gene

Orthologs for HPVC1 Gene

Evolution for HPVC1 Gene

ENSEMBL:
Gene Tree for HPVC1 (if available)
TreeFam:
Gene Tree for HPVC1 (if available)

No data available for Orthologs for HPVC1 Gene

Paralogs for HPVC1 Gene

No data available for Paralogs for HPVC1 Gene

Variants for HPVC1 Gene

Sequence variations from dbSNP and Humsavar for HPVC1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000480136 -- 54,203,287(+) ACTTG(A/G)TAACC upstream-variant-2KB
rs1000544293 -- 54,204,030(+) TTCCT(C/T)GCCTT upstream-variant-2KB
rs1000672779 -- 54,202,116(+) TAATA(C/T)AAAAT nc-transcript-variant
rs1000704124 -- 54,201,833(+) ACACA(A/C)ACACA nc-transcript-variant
rs1000789166 -- 54,203,141(+) GTATG(C/G)TATCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HPVC1 Gene

Variant ID Type Subtype PubMed ID
dgv11352n54 CNV gain 21841781
dgv815n27 CNV gain 19166990
esv2734425 CNV deletion 23290073
nsv1024361 CNV gain 25217958
nsv1030398 CNV gain 25217958
nsv1031162 CNV gain 25217958
nsv1031200 CNV gain 25217958
nsv522755 CNV loss 19592680
nsv526772 CNV loss 19592680
nsv528950 CNV gain 19592680
nsv7397 OTHER inversion 18451855

Relevant External Links for HPVC1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HPVC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HPVC1 Gene

Disorders for HPVC1 Gene

Relevant External Links for HPVC1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HPVC1

No disorders were found for HPVC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HPVC1 Gene

Publications for HPVC1 Gene

  1. A transcribed human sequence related to the mouse HC1 and the human papillomavirus type 18 E5 genes is located at chromosome 7p13-14. (PMID: 7581372) Geisen C … Kahn T (Human molecular genetics 1995) 2 3 60

Products for HPVC1 Gene

Sources for HPVC1 Gene

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