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Aliases for HPVC1 Gene

Subcategory (RNA class) for HPVC1 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for HPVC1 Gene

  • Human Papillomavirus (Type 18) E5 Central Sequence-Like 1 2 3
  • PE5L 3 6
  • HPV18E5L 3

External Ids for HPVC1 Gene

ORGUL Members for HPVC1 Gene

Summaries for HPVC1 Gene

GeneCards Summary for HPVC1 Gene

HPVC1 (Human Papillomavirus (Type 18) E5 Central Sequence-Like 1) is an RNA Gene, and belongs to the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HPVC1 Gene

Genomics for HPVC1 Gene

Genomic Location for HPVC1 Gene

Start:
54,201,224 bp from pter
End:
54,202,421 bp from pter
Size:
1,198 bases
Orientation:
Minus strand

Genomic View for HPVC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HPVC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPVC1 Gene

No data available for Regulatory Elements for HPVC1 Gene

Proteins for HPVC1 Gene

Post-translational modifications for HPVC1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPVC1 Gene

Domains for HPVC1 Gene

Gene Families for HPVC1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HPVC1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HPVC1 Gene

Function for HPVC1 Gene

Molecular function for HPVC1 Gene

GENATLAS Biochemistry: human papilloma virus 18,E5-like gene,murine HC1 homolog

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HPVC1 Gene

Localization for HPVC1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HPVC1 Gene

Pathways for HPVC1 Gene

SuperPathways for HPVC1 Gene

No Data Available

Interacting Proteins for HPVC1 Gene

Gene Ontology (GO) - Biological Process for HPVC1 Gene

None

No data available for Pathways by source for HPVC1 Gene

Transcripts for HPVC1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for HPVC1 Gene

No ASD Table

Relevant External Links for HPVC1 Gene

GeneLoc Exon Structure for
HPVC1
ECgene alternative splicing isoforms for
HPVC1

No data available for mRNA/cDNA for HPVC1 Gene

Expression for HPVC1 Gene

SOURCE GeneReport for Unigene cluster for HPVC1 Gene Hs.742598

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for HPVC1 Gene

Orthologs for HPVC1 Gene

No data available for Orthologs and Evolution for HPVC1 Gene

Paralogs for HPVC1 Gene

No data available for Paralogs for HPVC1 Gene

Variants for HPVC1 Gene

Sequence variations from dbSNP and Humsavar for HPVC1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs3924910 -- 54,201,228(+) ACTAG(A/G)AAGTA nc-transcript-variant
rs4947885 -- 54,201,215(+) AATGT(A/G)AAAAA downstream-variant-500B
rs6971391 -- 54,201,581(+) ACACA(A/G)ACATA nc-transcript-variant
rs7458407 -- 54,201,544(+) tacat(A/G)cagac nc-transcript-variant
rs10234241 -- 54,203,862(+) GGCCA(C/T)TGGCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HPVC1 Gene

Variant ID Type Subtype PubMed ID
esv2734425 CNV Deletion 23290073
nsv528950 CNV Gain 19592680
nsv522755 CNV Loss 19592680
nsv526772 CNV Loss 19592680
dgv815n27 CNV Gain 19166990
nsv7397 OTHER Inversion 18451855

Relevant External Links for HPVC1 Gene

HapMap Linkage Disequilibrium report
HPVC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HPVC1 Gene

Disorders for HPVC1 Gene

No disorders were found for HPVC1 Gene.

No data available for UniProtKB/Swiss-Prot for HPVC1 Gene

Publications for HPVC1 Gene

  1. A transcribed human sequence related to the mouse HC1 and the human papillomavirus type 18 E5 genes is located at chromosome 7p13-14. (PMID: 7581372) Geisen C. … Kahn T. (Hum. Mol. Genet. 1995) 2 3

Products for HPVC1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HPVC1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HPVC1
    • Block miRNA regulation of HPVC1 using miScript Target Protectors

    Sources for HPVC1 Gene

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