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Aliases for HPN-AS1 Gene

Subcategory (RNA class) for HPN-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HPN-AS1 Gene

  • HPN Antisense RNA 1 2 3
  • CTD-2527I21.11 3

External Ids for HPN-AS1 Gene

ORGUL Members for HPN-AS1 Gene

Previous GeneCards Identifiers for HPN-AS1 Gene

  • GC19M036560
  • GC19M037093

Summaries for HPN-AS1 Gene

GeneCards Summary for HPN-AS1 Gene

HPN-AS1 (HPN Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HPN-AS1 Gene

Genomics for HPN-AS1 Gene

Genomic Location for HPN-AS1 Gene

Start:
35,059,059 bp from pter
End:
35,106,304 bp from pter
Size:
47,246 bases
Orientation:
Minus strand

Genomic View for HPN-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HPN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPN-AS1 Gene

No data available for Regulatory Elements for HPN-AS1 Gene

Proteins for HPN-AS1 Gene

Post-translational modifications for HPN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPN-AS1 Gene

Domains for HPN-AS1 Gene

Gene Families for HPN-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HPN-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HPN-AS1 Gene

Function for HPN-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HPN-AS1 Gene

Localization for HPN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HPN-AS1 Gene

Pathways for HPN-AS1 Gene

SuperPathways for HPN-AS1 Gene

No Data Available

Interacting Proteins for HPN-AS1 Gene

Gene Ontology (GO) - Biological Process for HPN-AS1 Gene

None

No data available for Pathways by source for HPN-AS1 Gene

Transcripts for HPN-AS1 Gene

mRNA/cDNA for HPN-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HPN-AS1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HPN-AS1 Gene

No ASD Table

Relevant External Links for HPN-AS1 Gene

GeneLoc Exon Structure for
HPN-AS1
ECgene alternative splicing isoforms for
HPN-AS1

Expression for HPN-AS1 Gene

mRNA expression in normal human tissues for HPN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HPN-AS1 Gene

This gene is overexpressed in Liver (22.6), Pancreas (8.3), and Kidney - Cortex (6.5).
genes like me logo Genes that share expressions with HPN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for HPN-AS1 Gene

Orthologs for HPN-AS1 Gene

Evolution for HPN-AS1 Gene

ENSEMBL:
Gene Tree for HPN-AS1 (if available)
TreeFam:
Gene Tree for HPN-AS1 (if available)

No data available for Orthologs for HPN-AS1 Gene

Paralogs for HPN-AS1 Gene

No data available for Paralogs for HPN-AS1 Gene

Variants for HPN-AS1 Gene

Sequence variations from dbSNP and Humsavar for HPN-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs746931 -- 35,087,807(+) tacgg(G/T)ggctt intron-variant
rs874091 -- 35,076,840(-) TACAC(G/T)GCTGC intron-variant
rs882006 -- 35,099,975(-) CCCAG(C/T)CAGGC intron-variant
rs897760 -- 35,099,958(+) CACCA(A/T)CAGGT intron-variant
rs897764 -- 35,068,720(+) CAGTT(C/T)GCTCT intron-variant

Relevant External Links for HPN-AS1 Gene

HapMap Linkage Disequilibrium report
HPN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HPN-AS1 Gene

Disorders for HPN-AS1 Gene

No disorders were found for HPN-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for HPN-AS1 Gene

Publications for HPN-AS1 Gene

  1. Host determinants of HIV-1 control in African Americans. (PMID: 20205591) Pelak K. … . (J. Infect. Dis. 2010) 3
  2. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N. … Morris A.P. (Am. J. Hum. Genet. 2012) 3

Products for HPN-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HPN-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HPN-AS1
    • Block miRNA regulation of HPN-AS1 using miScript Target Protectors

    Sources for HPN-AS1 Gene

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