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Aliases for HPN-AS1 Gene

Subcategory (RNA class) for HPN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HPN-AS1 Gene

  • HPN Antisense RNA 1 2 3 5
  • CTD-2527I21.11 3

External Ids for HPN-AS1 Gene

Previous GeneCards Identifiers for HPN-AS1 Gene

  • GC19M036560
  • GC19M037093

Summaries for HPN-AS1 Gene

GeneCards Summary for HPN-AS1 Gene

HPN-AS1 (HPN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HPN-AS1 Gene

Genomics for HPN-AS1 Gene

Regulatory Elements for HPN-AS1 Gene

Enhancers for HPN-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F034972 1.8 FANTOM5 Ensembl ENCODE 10.6 +131.8 131806 3.4 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF302 LSM14A KMT2B KIAA0355 TMEM147-AS1 ZNF792 SCN1B ENSG00000267049 HAUS5 RBM42 GRAMD1A
GH19F035202 1.7 FANTOM5 Ensembl ENCODE 10.5 -99.2 -99238 6.1 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 YBX1 ZNF2 YY1 ZNF302 TMEM147-AS1 RBM42 ZNF792 KIAA0355 HAUS5 KMT2B ENSG00000267049 SDHAF1 LRFN3 LOC101927572
GH19F035134 1.3 Ensembl ENCODE 12 -29.3 -29289 2.0 ATF1 PKNOX1 ARNT ZNF133 ARID4B SIN3A ZNF48 ZNF2 GLIS2 ZNF143 LSM14A KMT2B RBM42 FXYD7 HPN-AS1 ENSG00000179066 USF2 HPN FAM187B TBCB
GH19F035161 1.3 Ensembl ENCODE 11.2 -59.4 -59360 8.1 HDGF ATF1 PKNOX1 ZNF121 ELK1 GATA2 FOS KLF13 ZNF263 NFYC FXYD5 SDHAF1 TMEM147-AS1 FAM187B MIR6887 FXYD3 ENSG00000179066 HPN-AS1 HAUS5 LIN37
GH19F035136 1.2 ENCODE 12 -33.2 -33154 5.4 MLX CREB3L1 YBX1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 LSM14A TMEM147-AS1 KIAA0355 ZNF792 HAUS5 RBM42 KMT2B LRFN3 WTIP LINC01766
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HPN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HPN-AS1 Gene

35,059,059 bp from pter
35,106,304 bp from pter
47,246 bases
Minus strand

Genomic View for HPN-AS1 Gene

Genes around HPN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HPN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HPN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPN-AS1 Gene

Proteins for HPN-AS1 Gene

Post-translational modifications for HPN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPN-AS1 Gene

Domains & Families for HPN-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HPN-AS1 Gene

Function for HPN-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HPN-AS1 Gene

Localization for HPN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HPN-AS1 Gene

Pathways & Interactions for HPN-AS1 Gene

SuperPathways for HPN-AS1 Gene

No Data Available

Interacting Proteins for HPN-AS1 Gene

Gene Ontology (GO) - Biological Process for HPN-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HPN-AS1 Gene

Transcripts for HPN-AS1 Gene

mRNA/cDNA for HPN-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HPN-AS1 Gene

No ASD Table

Relevant External Links for HPN-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HPN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HPN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HPN-AS1 Gene

This gene is overexpressed in Liver (x22.6), Pancreas (x8.3), and Kidney - Cortex (x6.5).
genes like me logo Genes that share expression patterns with HPN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HPN-AS1 Gene

Orthologs for HPN-AS1 Gene

Evolution for HPN-AS1 Gene

Gene Tree for HPN-AS1 (if available)
Gene Tree for HPN-AS1 (if available)

No data available for Orthologs for HPN-AS1 Gene

Paralogs for HPN-AS1 Gene

No data available for Paralogs for HPN-AS1 Gene

Variants for HPN-AS1 Gene

Sequence variations from dbSNP and Humsavar for HPN-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10407770 -- 35,089,262(+) CTATG(A/T)ATTTT intron-variant
rs10411370 -- 35,070,896(+) TAAAA(C/T)TGCCC intron-variant
rs10419703 -- 35,071,841(+) GAGAT(C/T)GAGAC intron-variant
rs10419823 -- 35,072,430(+) GGACA(C/T)TTTCT intron-variant, downstream-variant-500B
rs10422803 -- 35,106,311(+) CCGAG(A/C)CTGCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HPN-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1772n106 CNV insertion 24896259
esv1320761 CNV insertion 17803354
nsv1129392 OTHER inversion 24896259
nsv1131424 CNV deletion 24896259
nsv1142937 CNV tandem duplication 24896259
nsv1149059 CNV deletion 26484159
nsv525108 CNV loss 19592680

Relevant External Links for HPN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HPN-AS1 Gene

Disorders for HPN-AS1 Gene

Relevant External Links for HPN-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HPN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HPN-AS1 Gene

Publications for HPN-AS1 Gene

  1. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N. … Morris A.P. (Am. J. Hum. Genet. 2012) 3 64
  2. Host determinants of HIV-1 control in African Americans. (PMID: 20205591) Pelak K. … . (J. Infect. Dis. 2010) 3 64

Products for HPN-AS1 Gene

Sources for HPN-AS1 Gene

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