Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HPN-AS1 Gene

Subcategory (RNA class) for HPN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HPN-AS1 Gene

  • HPN Antisense RNA 1 2 3 5
  • CTD-2527I21.11 3

External Ids for HPN-AS1 Gene

Previous GeneCards Identifiers for HPN-AS1 Gene

  • GC19M036560
  • GC19M037093

Summaries for HPN-AS1 Gene

GeneCards Summary for HPN-AS1 Gene

HPN-AS1 (HPN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HPN-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HPN-AS1 Gene

Genomics for HPN-AS1 Gene

Regulatory Elements for HPN-AS1 Gene

Enhancers for HPN-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H034972 2 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +132.2 132243 2 HDGF PKNOX1 ARID4B SIN3A ZNF2 YY1 SLC30A9 ZNF302 ZNF416 ZNF207 TMEM147-AS1 LSM14A PROSER3 ZNF599 ENSG00000267049 HAUS5 KIAA0355 ZNF181 KMT2B ZNF30
GH19H035202 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -99.2 -99238 6 HDGF PKNOX1 ARNT SIN3A YBX1 ZNF766 CBX5 ZNF143 ZNF207 FOS ZNF599 KIAA0355 FXYD5 TMEM147-AS1 HAUS5 ZNF792 USF2 ENSG00000271049 FAM187B LSR
GH19H034975 1.5 FANTOM5 ENCODE dbSUPER 10.6 +130.2 130240 0 HDAC1 ATF1 TBL1XR1 ARNT RAD21 TCF12 GATA2 EGR1 ATF7 CREM ZNF599 TMEM147-AS1 HAUS5 SCN1B HPN GRAMD1A ENSG00000179066 FXYD3 HPN-AS1 ZNF30
GH19H035328 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.3 -224.7 -224731 5 HDGF PKNOX1 RB1 BMI1 TCF12 ZNF207 ATF7 ETV6 RUNX3 IKZF2 MAG CD22 KRTDAP DMKN HAMP ENSG00000233214 FAM187B TMEM147 TMEM147-AS1 ENSG00000232680
GH19H035136 1.3 ENCODE dbSUPER 12 -33.2 -33154 5 HDGF FOXA2 MLX ARID4B SIN3A YBX1 ZNF2 YY1 ZNF143 ZNF548 ZNF599 TMEM147-AS1 LSM14A HAUS5 KIAA0355 ZNF792 KMT2B RBM42 PROSER3 ENSG00000221857
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HPN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HPN-AS1 Gene

Chromosome:
19
Start:
35,059,059 bp from pter
End:
35,106,304 bp from pter
Size:
47,246 bases
Orientation:
Minus strand

Genomic View for HPN-AS1 Gene

Genes around HPN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HPN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HPN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HPN-AS1 Gene

Proteins for HPN-AS1 Gene

Post-translational modifications for HPN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HPN-AS1 Gene

Domains & Families for HPN-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HPN-AS1 Gene

Function for HPN-AS1 Gene

Phenotypes From GWAS Catalog for HPN-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HPN-AS1 Gene

Localization for HPN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HPN-AS1 Gene

Pathways & Interactions for HPN-AS1 Gene

SuperPathways for HPN-AS1 Gene

No Data Available

Interacting Proteins for HPN-AS1 Gene

Gene Ontology (GO) - Biological Process for HPN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HPN-AS1 Gene

Drugs & Compounds for HPN-AS1 Gene

No Compound Related Data Available

Transcripts for HPN-AS1 Gene

mRNA/cDNA for HPN-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HPN-AS1 Gene

No ASD Table

Relevant External Links for HPN-AS1 Gene

GeneLoc Exon Structure for
HPN-AS1
ECgene alternative splicing isoforms for
HPN-AS1

Expression for HPN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HPN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HPN-AS1 Gene

This gene is overexpressed in Liver (x22.6), Pancreas (x8.3), and Kidney - Cortex (x6.5).
genes like me logo Genes that share expression patterns with HPN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HPN-AS1 Gene

Orthologs for HPN-AS1 Gene

Evolution for HPN-AS1 Gene

ENSEMBL:
Gene Tree for HPN-AS1 (if available)
TreeFam:
Gene Tree for HPN-AS1 (if available)

No data available for Orthologs for HPN-AS1 Gene

Paralogs for HPN-AS1 Gene

No data available for Paralogs for HPN-AS1 Gene

Variants for HPN-AS1 Gene

Sequence variations from dbSNP and Humsavar for HPN-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000038940 -- 35,085,066(+) CCAAA(A/G)ACAAG intron-variant
rs1000066404 -- 35,079,221(+) GCAGC(C/T)AAAAC intron-variant
rs1000069314 -- 35,078,805(+) CCTGG(A/C)CAATT intron-variant
rs1000155636 -- 35,100,440(+) CAGTG(A/T)GCTGA intron-variant
rs1000218499 -- 35,063,143(+) TAAGG(A/C)GGGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HPN-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1772n106 CNV insertion 24896259
esv1320761 CNV insertion 17803354
nsv1129392 OTHER inversion 24896259
nsv1131424 CNV deletion 24896259
nsv1142937 CNV tandem duplication 24896259
nsv1149059 CNV deletion 26484159
nsv525108 CNV loss 19592680

Relevant External Links for HPN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HPN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HPN-AS1 Gene

Disorders for HPN-AS1 Gene

Relevant External Links for HPN-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HPN-AS1

No disorders were found for HPN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HPN-AS1 Gene

Publications for HPN-AS1 Gene

  1. Discovery and fine mapping of serum protein loci through transethnic meta-analysis. (PMID: 23022100) Franceschini N … Morris AP (American journal of human genetics 2012) 3 60
  2. Host determinants of HIV-1 control in African Americans. (PMID: 20205591) Pelak K … National Institute of Allergy and Infectious Diseases Center for HIV/AIDS Vaccine Immunology (CHAVI) (The Journal of infectious diseases 2010) 3 60

Products for HPN-AS1 Gene

Sources for HPN-AS1 Gene

Content
Loading form....