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HP11014 Gene(RNA Gene)

Uncharacterized HP11014

GCID:
GC11M126296
GIFtS:
10
Genes Participants
UDN Logo

Aliases for HP11014 Gene

Subcategory (RNA class) for HP11014 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for HP11014 Gene

  • Uncharacterized HP11014 3
  • RP11-712L6.5 5

External Ids for HP11014 Gene

Summaries for HP11014 Gene

GeneCards Summary for HP11014 Gene

HP11014 (Uncharacterized HP11014) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HP11014 Gene

Genomics for HP11014 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HP11014 Gene

Enhancers for HP11014 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G126339 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -40.5 -40481 10.8 PKNOX1 FOXA2 CREB3L1 MLX ARNT AGO1 ZFP64 ARID4B SIN3A DMAP1 DCPS FOXRED1 FAM118B HP11014 ST3GAL4 GC11P126349 PIR55528
GH11G126413 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12 -111.3 -111273 4.4 HDGF ATF1 CREB3L1 SIN3A FEZF1 YY1 ELK1 ZNF143 FOS TBX21 ST3GAL4 HP11014 DCPS ENSG00000278215 KIRREL3-AS1
GH11G126418 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -118.8 -118793 10.1 ATF1 ARNT E2F7 YY1 TCF12 ZNF766 ELK1 GATA2 ZNF263 NCOA1 ST3GAL4 DCPS HP11014 FAM118B RPUSD4 ENSG00000254694 LOC105369558 FEZ1 ENSG00000278215 KIRREL3-AS1
GH11G126350 1.6 Ensembl ENCODE dbSUPER 11.9 -51.8 -51763 11.5 HDGF PKNOX1 ARNT SIN3A YBX1 DMAP1 ZNF766 FOS MXD4 REST FOXRED1 HP11014 DCPS ST3GAL4 STT3A FAM118B ENSG00000278215
GH11G126480 1.4 Ensembl ENCODE dbSUPER 12.1 -176.6 -176631 1.1 TBP HDGF ATF1 CBX3 RB1 CREB3L1 ARID4B THRB ZNF2 RAD21 HP11014 ENSG00000254905 TIRAP DCPS KIRREL3 SRPRA FOXRED1 KIRREL3-AS1 ENSG00000278215
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HP11014 on UCSC Golden Path with GeneCards custom track

Promoters for HP11014 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000046626 218 1401 HNRNPUL1 PKNOX1 MLX CREB3L1 ZFP64 WRNIP1 ARID4B SIN3A FEZF1 DMAP1

Genomic Location for HP11014 Gene

Chromosome:
11
Start:
126,294,298 bp from pter
End:
126,304,318 bp from pter
Size:
10,021 bases
Orientation:
Minus strand

Genomic View for HP11014 Gene

Genes around HP11014 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HP11014 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HP11014 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HP11014 Gene

Proteins for HP11014 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HP11014 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HP11014 Gene

Domains & Families for HP11014 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HP11014 Gene

Function for HP11014 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HP11014 Gene

Localization for HP11014 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HP11014 Gene

Pathways & Interactions for HP11014 Gene

SuperPathways for HP11014 Gene

PathCards logo More details on SuperPathways for HP11014
No Data Available

Interacting Proteins for HP11014 Gene

Gene Ontology (GO) - Biological Process for HP11014 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HP11014 Gene

Drugs & Compounds for HP11014 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HP11014 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HP11014 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HP11014 Gene

No ASD Table

Relevant External Links for HP11014 Gene

GeneLoc Exon Structure for
HP11014

Expression for HP11014 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HP11014 Gene

Orthologs for HP11014 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for HP11014 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia -- 35
  • 100 (a)
 OneToOne
Species where no ortholog for HP11014 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HP11014 Gene

ENSEMBL:
Gene Tree for HP11014 (if available)
TreeFam:
Gene Tree for HP11014 (if available)

Paralogs for HP11014 Gene

No data available for Paralogs for HP11014 Gene

Variants for HP11014 Gene

Sequence variations from dbSNP and Humsavar for HP11014 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000339157 -- 126,294,684(+) CTCCA(A/G)TGTGT intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1000475176 -- 126,294,286(+) TTCAC(A/T)TCAAA nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs1000658661 -- 126,295,766(+) TAATA(C/T)ACTTT intron-variant
rs1001476717 -- 126,295,896(+) ACAAG(C/G)AAGAT intron-variant
rs1001606797 -- 126,297,620(+) CCTAG(A/C)ATTTC nc-transcript-variant

Variation tolerance for HP11014 Gene

Gene Damage Index Score: 0.43; 9.44% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for HP11014 Gene

Disorders for HP11014 Gene

Relevant External Links for HP11014

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HP11014

No disorders were found for HP11014 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HP11014 Gene

Publications for HP11014 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M. … Kato S. (Invest. Ophthalmol. Vis. Sci. 2011) 3 64

Products for HP11014 Gene

Sources for HP11014 Gene

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