Aliases for HP09053 Gene
Subcategory (RNA class) for HP09053 Gene
ncRNA
Quality Score for this RNA gene is
1
Aliases for HP09053 Gene
- Uncharacterized LOC101929357 3
External Ids for HP09053 Gene
- Entrez Gene: 101929357
Previous GeneCards Identifiers for HP09053 Gene
- GC03U902112
Summaries for HP09053 Gene
GeneCards Summary for HP09053 Gene
HP09053 (Uncharacterized LOC101929357) is an RNA Gene, and is affiliated with the ncRNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HP09053 Gene
Genomics for HP09053 Gene
Regulatory Elements for HP09053 Gene
Enhancers for HP09053 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH03G099824 | 1.1 | Ensembl ENCODE | 0.7 | -1.5 | -1489 | 1.7 | HDAC1 PKNOX1 TCF12 GATA2 ZNF366 ETV6 FOS JUNB ZEB2 NR2F2 | FILIP1L TBC1D23 TOMM70 HP09053 PIR39775 |
| GH03G099816 | 1.1 | ENCODE | 0.4 | +6.0 | 5961 | 2.2 | HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 | FILIP1L CMSS1 HP09053 |
| GH03G099832 | 1.1 | Ensembl ENCODE dbSUPER | 0.4 | -9.3 | -9264 | 1.3 | CTCF ZNF362 HLF FEZF1 RAD21 ZNF843 ZNF2 BCL11B CHAMP1 ZBTB33 | FILIP1L HP09053 PIR39775 |
| GH03G099842 | 1.3 | Ensembl ENCODE dbSUPER | 0.3 | -20.3 | -20306 | 2.8 | CTCF FOXA2 TEAD4 EBF1 RAD21 TEAD3 ZNF143 SMC3 ETV6 SMARCE1 | FILIP1L TMEM45A PIR39775 HP09053 |
| GH03G099845 | 1.3 | Ensembl ENCODE dbSUPER | 0.3 | -22.8 | -22755 | 2.0 | FOXA2 RAD21 YY1 TCF12 FOS ETV6 PAF1 CEBPB SSRP1 RFX3 | FILIP1L TBC1D23 PIR39775 HP09053 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HP09053 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HP09053 Gene
- Chromosome:
- 3
- Start:
- 99,816,632 bp from pter
- End:
- 99,823,865 bp from pter
- Size:
- 7,234 bases
- Orientation:
- Minus strand
Genomic View for HP09053 Gene
Genes around HP09053 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 3q12.1 by Entrez Gene
HP09053 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HP09053 Gene
Proteins for HP09053 Gene
Post-translational modifications for HP09053 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HP09053
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HP09053
- Origene Custom Protein Services for HP09053
- Search GeneTex for Proteins for HP09053
Assay Products
No data available for DME Specific Peptides for HP09053 Gene
Domains & Families for HP09053 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HP09053 Gene
Function for HP09053 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HP09053
CRISPR Products
- Browse CRISPR knockouts for HP09053
miRNA Products
- Search ViGene Biosciences for HP09053
Inhibitory RNA Products
- Search ViGene Biosciences for HP09053
Cell Line Products
- Search ViGene Biosciences for HP09053
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HP09053 Gene
Localization for HP09053 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HP09053 Gene
Transcripts for HP09053 Gene
CRISPR Products
- Browse CRISPR knockouts for HP09053
miRNA Products
- Search ViGene Biosciences for HP09053
Inhibitory RNA Products
- Search ViGene Biosciences for HP09053
Flow Cytometry Products
Relevant External Links for HP09053 Gene
- GeneLoc Exon Structure for
- HP09053
No data available for mRNA/cDNA for HP09053 Gene
Expression for HP09053 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HP09053 Gene
Orthologs for HP09053 Gene
No data available for Orthologs and Evolution for HP09053 Gene
Paralogs for HP09053 Gene
No data available for Paralogs for HP09053 Gene
Variants for HP09053 Gene
| SNP ID | Clin | Chr 03 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000270768 | -- | 99,823,454(+) | CTAGC(A/G)GTATT | intron-variant | |
| rs1000829553 | -- | 99,820,174(+) | TCTTA(C/G)ATTCC | intron-variant | |
| rs1001008261 | -- | 99,824,913(+) | TCATT(C/T)TATGG | intron-variant, upstream-variant-2KB | |
| rs1001186344 | -- | 99,816,997(+) | ATTGA(A/G)TTTCC | nc-transcript-variant, upstream-variant-2KB | |
| rs1001281132 | -- | 99,818,491(+) | ATAAC(A/G)ATAAT | intron-variant |
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for HP09053 Gene
Disorders for HP09053 Gene
Relevant External Links for HP09053
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- HP09053
No disorders were found for HP09053 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HP09053 Gene
Publications for HP09053 Gene
- Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M. … Kato S. (Invest. Ophthalmol. Vis. Sci. 2011) 3 64
Products for HP09053 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HP09053
- Origene Custom Protein Services for HP09053
- Browse OriGene Inhibitory RNA Products For HP09053
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HP09053
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HP09053
- GenScript: Custom all cDNA clones Services for HP09053
- GenScript Custom Purified and Recombinant Proteins Services for HP09053
- GenScript Custom Assay Services for HP09053
- GenScript Custom overexpressing Cell Line Services for HP09053
- Browse GenScript CRISPR for HP09053
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HP09053
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HP09053
- VectorBuilder custom plasmid, inducible vectors for HP09053
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HP09053
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HP09053 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer