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Aliases for HP09025 Gene

Subcategory (RNA class) for HP09025 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for HP09025 Gene

  • Uncharacterized LOC100652929 3

External Ids for HP09025 Gene

ORGUL Members for HP09025 Gene

Summaries for HP09025 Gene

GeneCards Summary for HP09025 Gene

HP09025 (Uncharacterized LOC100652929) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HP09025 Gene

Genomics for HP09025 Gene

Genomic Location for HP09025 Gene

Start:
79,707,266 bp from pter
End:
79,712,317 bp from pter
Size:
5,052 bases
Orientation:
Plus strand

Genomic View for HP09025 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HP09025 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HP09025 Gene

No data available for Regulatory Elements for HP09025 Gene

Proteins for HP09025 Gene

  • Protein details for HP09025 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F1T0K8-F1T0K8
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    F1T0K8
    Secondary Accessions:

    Protein attributes for HP09025 Gene

    Size:
    77 amino acids
    Molecular mass:
    8459 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HP09025 Gene

Proteomics data for HP09025 Gene at MOPED

Post-translational modifications for HP09025 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HP09025 Gene

Domains for HP09025 Gene

Protein Domains for HP09025 Gene

ProtoNet:
genes like me logo Genes that share domains with HP09025: view

No data available for Gene Families and UniProtKB/Swiss-Prot for HP09025 Gene

Function for HP09025 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HP09025 Gene

Localization for HP09025 Gene

No data available for Gene Ontology (GO) - Cellular Components for HP09025 Gene

Pathways for HP09025 Gene

SuperPathways for HP09025 Gene

No Data Available

Interacting Proteins for HP09025 Gene

Gene Ontology (GO) - Biological Process for HP09025 Gene

None

No data available for Pathways by source for HP09025 Gene

Transcripts for HP09025 Gene

mRNA/cDNA for HP09025 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HP09025 Gene

Uncharacterized LOC100652929:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HP09025 Gene

No ASD Table

Relevant External Links for HP09025 Gene

GeneLoc Exon Structure for
HP09025

Expression for HP09025 Gene

mRNA differential expression in normal tissues according to GTEx for HP09025 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (8.5), Brain - Cerebellum (7.5), Uterus (7.2), and Colon - Sigmoid (4.7).

SOURCE GeneReport for Unigene cluster for HP09025 Gene Hs.559249

Orthologs for HP09025 Gene

Evolution for HP09025 Gene

ENSEMBL:
Gene Tree for HP09025 (if available)
TreeFam:
Gene Tree for HP09025 (if available)

No data available for Orthologs for HP09025 Gene

Paralogs for HP09025 Gene

No data available for Paralogs for HP09025 Gene

Variants for HP09025 Gene

Sequence variations from dbSNP and Humsavar for HP09025 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs4075771 -- 79,705,889(+) CACCC(C/T)GCCTG upstream-variant-2KB
rs4555183 -- 79,706,436(+) GGCCC(A/G)CAATC upstream-variant-2KB
rs4889962 -- 79,710,602(+) CCCAT(C/T)GGTAA nc-transcript-variant
rs8067306 -- 79,711,998(+) AAACT(G/T)TGGGC nc-transcript-variant
rs8070738 -- 79,712,162(+) TTGGC(A/G)CCTTG nc-transcript-variant

Relevant External Links for HP09025 Gene

HapMap Linkage Disequilibrium report
HP09025

No data available for Structural Variations from Database of Genomic Variants (DGV) for HP09025 Gene

Disorders for HP09025 Gene

No disorders were found for HP09025 Gene.

No data available for UniProtKB/Swiss-Prot for HP09025 Gene

Publications for HP09025 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M. … Kato S. (Invest. Ophthalmol. Vis. Sci. 2011) 3

Products for HP09025 Gene

Sources for HP09025 Gene

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