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Aliases for HP09025 Gene

Subcategory (RNA class) for HP09025 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for HP09025 Gene

  • Uncharacterized LOC100652929 3 5
  • CTD-2116F7.1 3

External Ids for HP09025 Gene

Previous GeneCards Identifiers for HP09025 Gene

  • GC17U901695
  • GC17P077689
  • GC17P077690
  • GC17P077691

Summaries for HP09025 Gene

GeneCards Summary for HP09025 Gene

HP09025 (Uncharacterized LOC100652929) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HP09025 Gene

Genomics for HP09025 Gene

Genomic Location for HP09025 Gene

Chromosome:
17
Start:
79,707,266 bp from pter
End:
79,712,317 bp from pter
Size:
5,052 bases
Orientation:
Plus strand

Genomic View for HP09025 Gene

Genes around HP09025 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HP09025 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HP09025 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HP09025 Gene

No data available for Regulatory Elements for HP09025 Gene

Proteins for HP09025 Gene

  • Protein details for HP09025 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F1T0K8
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    F1T0K8

    Protein attributes for HP09025 Gene

    Size:
    77 amino acids
    Molecular mass:
    8459 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HP09025 Gene

Proteomics data for HP09025 Gene at MOPED

Post-translational modifications for HP09025 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HP09025 Gene

Domains & Families for HP09025 Gene

Protein Domains for HP09025 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HP09025: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HP09025 Gene

Function for HP09025 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HP09025 Gene

Localization for HP09025 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HP09025 Gene

Pathways & Interactions for HP09025 Gene

SuperPathways for HP09025 Gene

No Data Available

Interacting Proteins for HP09025 Gene

Gene Ontology (GO) - Biological Process for HP09025 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HP09025 Gene

Drugs & Compounds for HP09025 Gene

No Compound Related Data Available

Transcripts for HP09025 Gene

mRNA/cDNA for HP09025 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HP09025 Gene

Uncharacterized LOC100652929:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HP09025 Gene

No ASD Table

Relevant External Links for HP09025 Gene

GeneLoc Exon Structure for
HP09025

Expression for HP09025 Gene

mRNA differential expression in normal tissues according to GTEx for HP09025 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x8.5), Brain - Cerebellum (x7.5), Uterus (x7.2), and Colon - Sigmoid (x4.7).

SOURCE GeneReport for Unigene cluster for HP09025 Gene Hs.559249

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HP09025 Gene

Orthologs for HP09025 Gene

Evolution for HP09025 Gene

ENSEMBL:
Gene Tree for HP09025 (if available)
TreeFam:
Gene Tree for HP09025 (if available)

No data available for Orthologs for HP09025 Gene

Paralogs for HP09025 Gene

No data available for Paralogs for HP09025 Gene

Variants for HP09025 Gene

Sequence variations from dbSNP and Humsavar for HP09025 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs4555183 -- 79,706,436(+) GGCCC(A/G)CAATC upstream-variant-2KB
rs8070738 -- 79,712,162(+) TTGGC(A/G)CCTTG nc-transcript-variant
rs11869250 -- 79,709,498(+) AGATG(C/T)TGTTG nc-transcript-variant
rs11869267 -- 79,709,583(+) CAAGC(C/T)CCTCC nc-transcript-variant
rs12952149 -- 79,706,362(+) GCAGG(A/G)GTGCA upstream-variant-2KB

Relevant External Links for HP09025 Gene

HapMap Linkage Disequilibrium report
HP09025

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HP09025 Gene

Disorders for HP09025 Gene

No disorders were found for HP09025 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HP09025 Gene

Publications for HP09025 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M. … Kato S. (Invest. Ophthalmol. Vis. Sci. 2011) 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for HP09025 Gene

Sources for HP09025 Gene

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