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HP08777 Gene(RNA Gene)

Uncharacterized HP08777

GCID:
GC01P112851
GIFtS:
11
Genes Participants
UDN Logo

Aliases for HP08777 Gene

Subcategory (RNA class) for HP08777 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for HP08777 Gene

  • Uncharacterized HP08777 3
  • RP3-522D1.1 5

External Ids for HP08777 Gene

Summaries for HP08777 Gene

GeneCards Summary for HP08777 Gene

HP08777 (Uncharacterized HP08777) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HP08777 Gene

Genomics for HP08777 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HP08777 Gene

Enhancers for HP08777 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G112816 1.5 Ensembl ENCODE dbSUPER 5.4 -30.3 -30260 6.8 HDGF PKNOX1 FOXA2 ARNT FEZF1 ZNF2 ZNF766 FOS JUNB ZNF592 PPM1J RHOC LRIG2 LOC100996251 ENSG00000225075 MOV10 KCND3 LINC01356 HP08777 GC01P112820
GH01G112849 0.9 ENCODE 7.3 +0.4 368 2.5 FOXA2 ZNF2 YY1 GLIS2 ZNF263 KAT8 NFIL3 CBX8 SMARCA4 GLIS1 LINC01356 HP08777
GH01G112807 1.3 Ensembl ENCODE dbSUPER 4.8 -41.2 -41170 3.5 HDGF FOXA2 RB1 ZNF2 RAD21 EGR1 ZNF143 DEK EGR2 ZNF263 PPM1J RHOC HP08777 GC01P112820 GC01M112752
GH01G112840 1 Ensembl ENCODE 5.8 -9.0 -9028 0.8 PKNOX1 KLF1 FOXA2 KLF17 FEZF1 BCL11B ZNF121 ZFHX2 GATA3 PRDM10 HP08777 GC01P112820
GH01G112862 0.7 ENCODE 4.8 +13.1 13090 1.0 GATAD2A SOX5 SOX13 TFAP4 ZNF362 TFE3 SAP130 BHLHE40 ARID4B ZNF384 SLC16A1 HP08777 GC01P112858 LOC105378911
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HP08777 on UCSC Golden Path with GeneCards custom track

Promoters for HP08777 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000011540 172 1201 CTCF INSM2 RBBP5 ZIC2 ZNF2 HIC1 GLIS2 ZBTB48 PATZ1 SCRT2

Genomic Location for HP08777 Gene

Chromosome:
1
Start:
112,850,028 bp from pter
End:
112,877,871 bp from pter
Size:
27,844 bases
Orientation:
Plus strand

Genomic View for HP08777 Gene

Genes around HP08777 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HP08777 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HP08777 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HP08777 Gene

Proteins for HP08777 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for HP08777 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F1T0K1
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    F1T0K1

    Protein attributes for HP08777 Gene

    Size:
    51 amino acids
    Molecular mass:
    5747 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HP08777 Gene

Post-translational modifications for HP08777 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HP08777 Gene

Domains & Families for HP08777 Gene

Protein Domains for HP08777 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HP08777: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HP08777 Gene

Function for HP08777 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HP08777 Gene

Localization for HP08777 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HP08777 Gene

Pathways & Interactions for HP08777 Gene

SuperPathways for HP08777 Gene

PathCards logo More details on SuperPathways for HP08777
No Data Available

Interacting Proteins for HP08777 Gene

Gene Ontology (GO) - Biological Process for HP08777 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HP08777 Gene

Drugs & Compounds for HP08777 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HP08777 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HP08777 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HP08777 Gene

No ASD Table

Relevant External Links for HP08777 Gene

GeneLoc Exon Structure for
HP08777

Expression for HP08777 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HP08777 Gene

Orthologs for HP08777 Gene

Evolution for HP08777 Gene

ENSEMBL:
Gene Tree for HP08777 (if available)
TreeFam:
Gene Tree for HP08777 (if available)

No data available for Orthologs for HP08777 Gene

Paralogs for HP08777 Gene

No data available for Paralogs for HP08777 Gene

Variants for HP08777 Gene

Sequence variations from dbSNP and Humsavar for HP08777 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000004827 -- 112,854,627(+) TCAGG(C/T)ATGGC intron-variant
rs1000096421 -- 112,866,985(+) CAGGC(A/G)TGAGC intron-variant
rs1000224603 -- 112,856,989(+) AGTGG(C/T)GTGAT intron-variant, downstream-variant-500B
rs1000284199 -- 112,873,838(+) TCTAC(A/C)AAAAA intron-variant, upstream-variant-2KB
rs1000345788 -- 112,869,568(+) GGACC(A/G)TGTAG intron-variant, nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for HP08777 Gene

Disorders for HP08777 Gene

Relevant External Links for HP08777

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HP08777

No disorders were found for HP08777 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HP08777 Gene

Publications for HP08777 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M. … Kato S. (Invest. Ophthalmol. Vis. Sci. 2011) 3 64

Products for HP08777 Gene

Sources for HP08777 Gene

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