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Aliases for HOXD11 Gene

Aliases for HOXD11 Gene

  • Homeobox D11 2 3
  • Homeobox Protein Hox-4F 3 4
  • Homeo Box D11 2 3
  • HOX4F 3 4
  • Hox-4.6, Mouse, Homolog Of 3
  • Homeo Box 4F 3
  • HOX4 3

External Ids for HOXD11 Gene

Previous HGNC Symbols for HOXD11 Gene

  • HOX4
  • HOX4F

Previous GeneCards Identifiers for HOXD11 Gene

  • GC02P175024
  • GC02P175633
  • GC02P176936
  • GC02P177174
  • GC02P176797
  • GC02P176680
  • GC02P168849

Summaries for HOXD11 Gene

Entrez Gene Summary for HOXD11 Gene

  • This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, located on different chromosomes, consisting of 9 to 11 genes arranged in tandem. This gene is one of several homeobox HOXD genes located in a cluster on chromosome 2. Deletions that remove the entire HOXD gene cluster or the 5' end of this cluster have been associated with severe limb and genital abnormalities. The product of the mouse Hoxd11 gene plays a role in forelimb morphogenesis. [provided by RefSeq, Jul 2008]

GeneCards Summary for HOXD11 Gene

HOXD11 (Homeobox D11) is a Protein Coding gene. Diseases associated with HOXD11 include syndactyly, type v and brachydactyly-syndactyly syndrome. GO annotations related to this gene include sequence-specific DNA binding. An important paralog of this gene is HOXD10.

UniProtKB/Swiss-Prot for HOXD11 Gene

  • Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis

Gene Wiki entry for HOXD11 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXD11 Gene

Genomics for HOXD11 Gene

Regulatory Elements for HOXD11 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for HOXD11 Gene

Chromosome:
2
Start:
176,104,216 bp from pter
End:
176,109,754 bp from pter
Size:
5,539 bases
Orientation:
Plus strand

Genomic View for HOXD11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOXD11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXD11 Gene

Proteins for HOXD11 Gene

  • Protein details for HOXD11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P31277-HXD11_HUMAN
    Recommended name:
    Homeobox protein Hox-D11
    Protein Accession:
    P31277
    Secondary Accessions:
    • A6NIS4
    • Q9NS02

    Protein attributes for HOXD11 Gene

    Size:
    338 amino acids
    Molecular mass:
    35197 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HOXD11 Gene

Proteomics data for HOXD11 Gene at MOPED

Post-translational modifications for HOXD11 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HOXD11 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for HOXD11 Gene

Domains & Families for HOXD11 Gene

Gene Families for HOXD11 Gene

Protein Domains for HOXD11 Gene

Suggested Antigen Peptide Sequences for HOXD11 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P31277

UniProtKB/Swiss-Prot:

HXD11_HUMAN :
  • Contains 1 homeobox DNA-binding domain.
  • Belongs to the Abd-B homeobox family.
Domain:
  • Contains 1 homeobox DNA-binding domain.
Family:
  • Belongs to the Abd-B homeobox family.
genes like me logo Genes that share domains with HOXD11: view

Function for HOXD11 Gene

Molecular function for HOXD11 Gene

GENATLAS Biochemistry:
homeo box D11(4F),homologous to mouse Hox-4.6
UniProtKB/Swiss-Prot Function:
Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis

Gene Ontology (GO) - Molecular Function for HOXD11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding --
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with HOXD11: view
genes like me logo Genes that share phenotypes with HOXD11: view

Animal Models for HOXD11 Gene

MGI Knock Outs for HOXD11:

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HOXD11

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for HOXD11 Gene

Localization for HOXD11 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HOXD11 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HOXD11 Gene COMPARTMENTS Subcellular localization image for HOXD11 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for HOXD11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with HOXD11: view

Pathways & Interactions for HOXD11 Gene

SuperPathways for HOXD11 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Homeobox (HOX) Genes in human,mouse,rat

SIGNOR curated interactions for HOXD11 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for HOXD11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001501 skeletal system development --
GO:0001656 metanephros development IEA --
GO:0001658 branching involved in ureteric bud morphogenesis ISS --
GO:0001759 organ induction IEA --
GO:0006351 transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with HOXD11: view

No data available for Pathways by source for HOXD11 Gene

Drugs & Compounds for HOXD11 Gene

No Compound Related Data Available

Transcripts for HOXD11 Gene

mRNA/cDNA for HOXD11 Gene

Unigene Clusters for HOXD11 Gene

Homeobox D11:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HOXD11

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXD11 Gene

No ASD Table

Relevant External Links for HOXD11 Gene

GeneLoc Exon Structure for
HOXD11
ECgene alternative splicing isoforms for
HOXD11

Expression for HOXD11 Gene

mRNA expression in normal human tissues for HOXD11 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HOXD11 Gene

This gene is overexpressed in Uterus (x13.3), Vagina (x9.7), Colon - Sigmoid (x9.5), Prostate (x5.8), Cervix - Ectocervix (x5.2), and Kidney - Cortex (x4.0).

Protein differential expression in normal tissues from HIPED for HOXD11 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for HOXD11 Gene



SOURCE GeneReport for Unigene cluster for HOXD11 Gene Hs.421136

genes like me logo Genes that share expression patterns with HOXD11: view

Protein tissue co-expression partners for HOXD11 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for HOXD11 Gene

Orthologs for HOXD11 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HOXD11 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia HOXD11 35
  • 91.37 (n)
  • 92.56 (a)
HOXD 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hoxd11 35
  • 87.2 (n)
  • 89.88 (a)
Hoxd11 16
Hoxd11 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia HOXD11 35
  • 96.25 (n)
  • 94.97 (a)
HOXD11 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HOXD11 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia HOXD11 36
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 88 (a)
ManyToMany
chicken
(Gallus gallus)
Aves HOXD11 35
  • 72.5 (n)
  • 71.79 (a)
HOXD11 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia HOXD11 36
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia hoxd11 35
  • 65.33 (n)
  • 64.96 (a)
zebrafish
(Danio rerio)
Actinopterygii hoxd11a 35
  • 58.91 (n)
  • 56 (a)
hoxd11a 36
  • 55 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 12 (a)
OneToMany
Species with no ortholog for HOXD11:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HOXD11 Gene

ENSEMBL:
Gene Tree for HOXD11 (if available)
TreeFam:
Gene Tree for HOXD11 (if available)

Paralogs for HOXD11 Gene

(13) SIMAP similar genes for HOXD11 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with HOXD11: view

Variants for HOXD11 Gene

Sequence variations from dbSNP and Humsavar for HOXD11 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs847146 -- 176,108,354(-) ACAGC(G/T)ATTAA intron-variant
rs847147 -- 176,105,931(-) TCAGC(C/T)CCTCC upstream-variant-2KB
rs847148 -- 176,105,728(-) CCGAG(A/T)GAGCA upstream-variant-2KB
rs2736847 -- 176,108,185(+) gggga(A/G)ggggg intron-variant
rs3813811 -- 176,105,612(-) CTGGG(A/G)CCTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXD11 Gene

Variant ID Type Subtype PubMed ID
nsv520227 CNV Loss 19592680
dgv676n67 CNV Gain 20364138
nsv875437 CNV Loss 21882294
nsv875438 CNV Loss 21882294
nsv527187 CNV Loss 19592680
nsv517968 CNV Loss 19592680
dgv4368n71 CNV Loss 21882294
nsv524250 CNV Loss 19592680
nsv875441 CNV Loss 21882294
nsv875442 CNV Loss 21882294
dgv4369n71 CNV Loss 21882294
nsv875446 CNV Loss 21882294
nsv875447 CNV Loss 21882294

Variation tolerance for HOXD11 Gene

Gene Damage Index Score: 1.42; 27.96% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HOXD11 Gene

HapMap Linkage Disequilibrium report
HOXD11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HOXD11 Gene

Disorders for HOXD11 Gene

MalaCards: The human disease database

(3) MalaCards diseases for HOXD11 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
syndactyly, type v
  • syndactyly type 5
brachydactyly-syndactyly syndrome
  • bdsd
renal hypodysplasia/aplasia 1
  • renal agenesis
- elite association

Relevant External Links for HOXD11

Genetic Association Database (GAD)
HOXD11
Human Genome Epidemiology (HuGE) Navigator
HOXD11
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXD11
genes like me logo Genes that share disorders with HOXD11: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HOXD11 Gene

Publications for HOXD11 Gene

  1. The HOXD11 gene is fused to the NUP98 gene in acute myeloid leukemia with t(2;11)(q31;p15). (PMID: 11782354) Taketani T. … Hayashi Y. (Cancer Res. 2002) 23 67
  2. Transition of Hox expression during limb cartilage development. (PMID: 12351195) Suzuki M. … Kuroiwa A. (Mech. Dev. 2002) 23 67
  3. All for one and one for all: condensations and the initiation of skeletal development. (PMID: 10655033) Hall B.K. … Miyake T. (Bioessays 2000) 23 67
  4. Activation of Fgf-4 and HoxD gene expression by BMP-2 expressing cells in the developing chick limb. (PMID: 8674421) Duprez D.M. … Brickell P.M. (Development 1996) 23 67
  5. Synpolydactyly in mice with a targeted deficiency in the HoxD complex. (PMID: 8900279) ZA!kA!ny J. … Duboule D. (Nature 1996) 23 67

Products for HOXD11 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Homeobox (HOX) Genes in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate HOXD11
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HOXD11
    • Block miRNA regulation of HOXD11 using miScript Target Protectors

    Sources for HOXD11 Gene

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