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Aliases for HOXD-AS2 Gene

Subcategory (RNA class) for HOXD-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXD-AS2 Gene

  • HOXD Cluster Antisense RNA 2 2 3 5
  • HOXD Cluster Antisense RNA 2 (Non-Protein Coding) 2

External Ids for HOXD-AS2 Gene

Previous GeneCards Identifiers for HOXD-AS2 Gene

  • GC02M176988

Summaries for HOXD-AS2 Gene

GeneCards Summary for HOXD-AS2 Gene

HOXD-AS2 (HOXD Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXD-AS2 Gene

Genomics for HOXD-AS2 Gene

Regulatory Elements for HOXD-AS2 Gene

Enhancers for HOXD-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F176449 0.5 Ensembl ENCODE 20.8 -312.9 -312895 0.8 TEAD4 HLF ZBTB8A ZNF264 ZNF316 MAFF BCL11A HMBOX1 POU5F1 PRDM10 HOXD4 HOXD8 HOXD-AS2 HOXD3 DNAJC19P5 MIR10B LOC105373753 MIR7704 HAGLR HOXD1
GH02F176159 0.2 ENCODE 11.8 -24.1 -24116 3.0 RNF2 MTA2 SUZ12 CBX2 FEZF1 ZIC2 TBX21 OSR2 CBX8 ZFHX2 HAGLROS HAGLR HOXD1 MIR7704 HOXD-AS2 HOXD9 HOXD3 HOXD8 HOXD10 HOXD11
GH02F176116 0.6 ENCODE 11.4 +20.4 20411 0.2 ZNF202 CTCF SUZ12 BHLHE40 CBX2 SIN3A USF2 MAX RAD21 RAD51 HOXD13 HOXD-AS2 HOXD10 HOXD9
GH02F176173 0.2 ENCODE 11.2 -35.8 -35830 0.2 SOX13 SUZ12 SAP130 RARA CREM HOMEZ EZH2 GATAD2A SOX5 HMG20B HOXD-AS2 HOXD3 HOXD10 HOXD11 HOXD8 HOXD12 HOXD9 HOXD13 HAGLROS LOC105373753
GH02F176171 0.7 ENCODE 11.2 -34.4 -34350 0.2 RNF2 CBX2 CTBP2 ZBTB40 HAGLROS HOXD-AS2 HOXD3 HOXD10 HOXD11 HOXD8 HOXD12 HOXD9 HOXD13 LOC105373753
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HOXD-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for HOXD-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000602923 98 2001 PKNOX1 SIN3A FEZF1 GLI4 ZNF2 GLIS2 ZNF263 SP3 YY2 REST

Genomic Location for HOXD-AS2 Gene

Chromosome:
2
Start:
176,121,611 bp from pter
End:
176,137,098 bp from pter
Size:
15,488 bases
Orientation:
Minus strand

Genomic View for HOXD-AS2 Gene

Genes around HOXD-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXD-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXD-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXD-AS2 Gene

Proteins for HOXD-AS2 Gene

Post-translational modifications for HOXD-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXD-AS2 Gene

Domains & Families for HOXD-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXD-AS2 Gene

Function for HOXD-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXD-AS2 Gene

Localization for HOXD-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXD-AS2 Gene

Pathways & Interactions for HOXD-AS2 Gene

SuperPathways for HOXD-AS2 Gene

No Data Available

Interacting Proteins for HOXD-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXD-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXD-AS2 Gene

Transcripts for HOXD-AS2 Gene

mRNA/cDNA for HOXD-AS2 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXD-AS2 Gene

HOXD cluster antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOXD-AS2 Gene

No ASD Table

Relevant External Links for HOXD-AS2 Gene

GeneLoc Exon Structure for
HOXD-AS2
ECgene alternative splicing isoforms for
HOXD-AS2

Expression for HOXD-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXD-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXD-AS2 Gene

This gene is overexpressed in Uterus (x5.1) and Kidney - Cortex (x4.9).

SOURCE GeneReport for Unigene cluster for HOXD-AS2 Gene:

Hs.667234
genes like me logo Genes that share expression patterns with HOXD-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXD-AS2 Gene

Orthologs for HOXD-AS2 Gene

Evolution for HOXD-AS2 Gene

ENSEMBL:
Gene Tree for HOXD-AS2 (if available)
TreeFam:
Gene Tree for HOXD-AS2 (if available)

No data available for Orthologs for HOXD-AS2 Gene

Paralogs for HOXD-AS2 Gene

No data available for Paralogs for HOXD-AS2 Gene

Variants for HOXD-AS2 Gene

Sequence variations from dbSNP and Humsavar for HOXD-AS2 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs111354199 -- 176,138,105(+) ACTGC(C/G)TGCGC intron-variant, upstream-variant-2KB
rs112151684 -- 176,138,805(+) AAATC(A/G)CAGGA intron-variant, upstream-variant-2KB
rs112814221 -- 176,137,590(+) TAAAT(A/G)TTTCT intron-variant, upstream-variant-2KB
rs113545284 -- 176,137,019(+) CTCCC(C/T)GCTCC intron-variant, nc-transcript-variant
rs114176730 -- 176,134,653(+) AGGGA(A/G)GGTCA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HOXD-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv676n67 CNV gain 20364138
nsv517968 CNV loss 19592680
nsv583673 CNV loss 21841781

Relevant External Links for HOXD-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXD-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXD-AS2 Gene

Disorders for HOXD-AS2 Gene

Relevant External Links for HOXD-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXD-AS2

No disorders were found for HOXD-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXD-AS2 Gene

Publications for HOXD-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for HOXD-AS2 Gene

Sources for HOXD-AS2 Gene

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