Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HOXD-AS2 Gene

Subcategory (RNA class) for HOXD-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXD-AS2 Gene

  • HOXD Cluster Antisense RNA 2 2 3 5
  • HOXD Cluster Antisense RNA 2 (Non-Protein Coding) 2

External Ids for HOXD-AS2 Gene

Previous GeneCards Identifiers for HOXD-AS2 Gene

  • GC02M176988

Summaries for HOXD-AS2 Gene

GeneCards Summary for HOXD-AS2 Gene

HOXD-AS2 (HOXD Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXD-AS2 Gene

Genomics for HOXD-AS2 Gene

Regulatory Elements for HOXD-AS2 Gene

Enhancers for HOXD-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G176552 1.5 FANTOM5 Ensembl ENCODE 11.2 -416.6 -416593 3.0 ARNT FEZF1 ZNF2 ZBTB7B YY1 ZNF143 REST ZNF592 ATF4 SMARCA4 HOXD4 HOXD3 HOXD-AS2 MIR10B HOXD1 HAGLR HOXD13 ENSG00000236231 GC02P176590
GH02G176177 1.1 Ensembl ENCODE 11 -41.3 -41320 2.2 PKNOX1 FEZF1 ZNF366 FOS EGR2 SP3 ZNF114 ZNF579 PRDM6 ZBTB33 HAGLROS HAGLR HOXD1 HOXD4 HOXD3 HOXD-AS2 MIR10B HOXD11 HOXD12 HOXD10
GH02G176653 1 FANTOM5 ENCODE 11 -517.0 -517002 0.2 ZNF263 CTCF ZNF654 TEAD1 TRIM22 SIN3A RAD21 GATA3 FOXK2 ZNF341 HOXD3 HOXD8 HOXD-AS2 HOXD9 HOXD11 LINC01116 GC02P176666 GC02P176638
GH02G176159 0.8 ENCODE 11.8 -24.1 -24116 3.0 ELF3 CTCF SUZ12 FEZF1 ZIC2 ZFHX2 EZH2 EGR2 RNF2 MTA2 HAGLROS HAGLR HOXD1 HOXD-AS2 HOXD9 HOXD3 HOXD8 HOXD10 HOXD11 HOXD13
GH02G176173 0.8 ENCODE 11.2 -35.8 -35830 0.2 SOX13 FOXA2 SAP130 SUZ12 RARA GATA4 CREM HOMEZ EZH2 SOX5 HOXD-AS2 HOXD3 HOXD10 HOXD11 HOXD8 HOXD12 HOXD9 HOXD13 HAGLROS ENSG00000272729
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXD-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for HOXD-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000126751 398 1001 PKNOX1 ZSCAN4 ZNF76 FEZF1 GLI4 ZNF2 GLIS2 ZNF366 SCRT2 EGR2

Genomic Location for HOXD-AS2 Gene

Chromosome:
2
Start:
176,121,611 bp from pter
End:
176,137,098 bp from pter
Size:
15,488 bases
Orientation:
Minus strand

Genomic View for HOXD-AS2 Gene

Genes around HOXD-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXD-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXD-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXD-AS2 Gene

Proteins for HOXD-AS2 Gene

Post-translational modifications for HOXD-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXD-AS2 Gene

Domains & Families for HOXD-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXD-AS2 Gene

Function for HOXD-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXD-AS2 Gene

Localization for HOXD-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXD-AS2 Gene

Pathways & Interactions for HOXD-AS2 Gene

SuperPathways for HOXD-AS2 Gene

No Data Available

Interacting Proteins for HOXD-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXD-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXD-AS2 Gene

Drugs & Compounds for HOXD-AS2 Gene

No Compound Related Data Available

Transcripts for HOXD-AS2 Gene

mRNA/cDNA for HOXD-AS2 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXD-AS2 Gene

HOXD cluster antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOXD-AS2 Gene

No ASD Table

Relevant External Links for HOXD-AS2 Gene

GeneLoc Exon Structure for
HOXD-AS2
ECgene alternative splicing isoforms for
HOXD-AS2

Expression for HOXD-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXD-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXD-AS2 Gene

This gene is overexpressed in Uterus (x5.1) and Kidney - Cortex (x4.9).

SOURCE GeneReport for Unigene cluster for HOXD-AS2 Gene:

Hs.667234
genes like me logo Genes that share expression patterns with HOXD-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXD-AS2 Gene

Orthologs for HOXD-AS2 Gene

Evolution for HOXD-AS2 Gene

ENSEMBL:
Gene Tree for HOXD-AS2 (if available)
TreeFam:
Gene Tree for HOXD-AS2 (if available)

No data available for Orthologs for HOXD-AS2 Gene

Paralogs for HOXD-AS2 Gene

No data available for Paralogs for HOXD-AS2 Gene

Variants for HOXD-AS2 Gene

Sequence variations from dbSNP and Humsavar for HOXD-AS2 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000443493 -- 176,134,623(+) GTCTT(C/T)GCGGC downstream-variant-500B
rs1000706069 -- 176,137,509(+) TTAGT(A/G)ACTGA intron-variant, upstream-variant-2KB
rs1000771331 -- 176,137,776(+) CAAGA(C/G/T)ATCTC intron-variant, upstream-variant-2KB
rs1000773162 -- 176,135,821(+) CTCCC(A/G)GGAAT intron-variant, upstream-variant-2KB
rs1000825415 -- 176,136,110(+) ACGAT(A/G)GCCAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXD-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv676n67 CNV gain 20364138
nsv517968 CNV loss 19592680
nsv583673 CNV loss 21841781

Relevant External Links for HOXD-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXD-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXD-AS2 Gene

Disorders for HOXD-AS2 Gene

Relevant External Links for HOXD-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXD-AS2

No disorders were found for HOXD-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXD-AS2 Gene

Publications for HOXD-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for HOXD-AS2 Gene

Sources for HOXD-AS2 Gene

Content
Loading form....