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Aliases for HOXD-AS2 Gene

Subcategory (RNA class) for HOXD-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOXD-AS2 Gene

  • HOXD Cluster Antisense RNA 2 2 3 5
  • HOXD Cluster Antisense RNA 2 (Non-Protein Coding) 2

External Ids for HOXD-AS2 Gene

Previous GeneCards Identifiers for HOXD-AS2 Gene

  • GC02M176988

Summaries for HOXD-AS2 Gene

GeneCards Summary for HOXD-AS2 Gene

HOXD-AS2 (HOXD Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXD-AS2 Gene

Genomics for HOXD-AS2 Gene

Regulatory Elements for HOXD-AS2 Gene

Enhancers for HOXD-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around HOXD-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for HOXD-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for HOXD-AS2 Gene

176,121,611 bp from pter
176,137,098 bp from pter
15,488 bases
Minus strand

Genomic View for HOXD-AS2 Gene

Genes around HOXD-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXD-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXD-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXD-AS2 Gene

Proteins for HOXD-AS2 Gene

Post-translational modifications for HOXD-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXD-AS2 Gene

Domains & Families for HOXD-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXD-AS2 Gene

Function for HOXD-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXD-AS2 Gene

Localization for HOXD-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXD-AS2 Gene

Pathways & Interactions for HOXD-AS2 Gene

SuperPathways for HOXD-AS2 Gene

No Data Available

Interacting Proteins for HOXD-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXD-AS2 Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXD-AS2 Gene

Drugs & Compounds for HOXD-AS2 Gene

No Compound Related Data Available

Transcripts for HOXD-AS2 Gene

mRNA/cDNA for HOXD-AS2 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXD-AS2 Gene

HOXD cluster antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOXD-AS2 Gene

No ASD Table

Relevant External Links for HOXD-AS2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXD-AS2 Gene

mRNA expression in normal human tissues for HOXD-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXD-AS2 Gene

This gene is overexpressed in Uterus (x5.1) and Kidney - Cortex (x4.9).

SOURCE GeneReport for Unigene cluster for HOXD-AS2 Gene:

genes like me logo Genes that share expression patterns with HOXD-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXD-AS2 Gene

Orthologs for HOXD-AS2 Gene

Evolution for HOXD-AS2 Gene

Gene Tree for HOXD-AS2 (if available)
Gene Tree for HOXD-AS2 (if available)

No data available for Orthologs for HOXD-AS2 Gene

Paralogs for HOXD-AS2 Gene

No data available for Paralogs for HOXD-AS2 Gene

Variants for HOXD-AS2 Gene

Sequence variations from dbSNP and Humsavar for HOXD-AS2 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs711827 -- 176,134,392(-) AGAAC(C/T)ATTTT downstream-variant-500B
rs114176730 -- 176,134,653(+) AGGGA(A/G)GGTCA downstream-variant-500B
rs114704366 -- 176,134,701(+) ATAAT(C/G)AGGCA downstream-variant-500B
rs115943787 -- 176,134,402(+) TCTCC(A/G)ATGTT downstream-variant-500B
rs116279060 -- 176,134,771(+) TTCCA(C/T)ATGTA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HOXD-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv676n67 CNV gain 20364138
nsv517968 CNV loss 19592680
nsv583673 CNV loss 21841781

Relevant External Links for HOXD-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXD-AS2 Gene

Disorders for HOXD-AS2 Gene

Relevant External Links for HOXD-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HOXD-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXD-AS2 Gene

Publications for HOXD-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65

Products for HOXD-AS2 Gene

Sources for HOXD-AS2 Gene

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