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Aliases for HOXC13-AS Gene

Subcategory (RNA class) for HOXC13-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXC13-AS Gene

  • HOXC13 Antisense RNA 2 3 5
  • HOXC Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXC Cluster Antisense RNA 5 2
  • HOXC-AS5 3

External Ids for HOXC13-AS Gene

Previous HGNC Symbols for HOXC13-AS Gene

  • HOXC-AS5

Previous GeneCards Identifiers for HOXC13-AS Gene

  • GC12M054331

Summaries for HOXC13-AS Gene

GeneCards Summary for HOXC13-AS Gene

HOXC13-AS (HOXC13 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC13-AS Gene

Genomics for HOXC13-AS Gene

Regulatory Elements for HOXC13-AS Gene

Enhancers for HOXC13-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F053962 0.2 ENCODE 11.8 -27.0 -27036 7.5 CREB3L1 DMAP1 FEZF1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 MCM3 SP3 HOXC8 HOXC9 AAAS SP1 ENSG00000258344 HOXC5 HOTAIR HOXC6 HOXC4 ZNF740
GH12F053960 0.2 ENCODE 11.8 -21.3 -21349 0.2 ZNF366 RNF2 SUZ12 CBX2 EZH2 HOXC-AS3 HOXC10 HOXC6 MIR196A2 HOXC5 HOXC13 HOXC13-AS HOXC9 HOXC-AS1 HOXC-AS2
GH12F053961 0.6 ENCODE 11.8 -22.2 -22189 0.2 RNF2 SUZ12 CBX2 REST NR2F2 EZH2 HOXC-AS3 HOXC10 HOXC6 MIR196A2 HOXC5 HOXC13 HOXC13-AS HOXC-AS2 HOXC9 HOXC-AS1
GH12F053971 1.4 FANTOM5 Ensembl ENCODE 11.7 -50.6 -50600 36.8 CREB3L1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 NFYC ZNF740 MAP3K12 SP1 ENSG00000258344 LOC100652999 HOXC8 HOXC5 PFDN5 HOTAIR IGFBP6
GH12F053844 0.8 Ensembl ENCODE 10.9 +93.9 93872 2.8 PKNOX1 JUN TEAD4 RAD21 RFX5 ZNF121 ZNF316 GATA3 FOXK2 SMC3 HOXC13 HOXC13-AS HOXC6 HOXC4 HOXC5 MIR615 ENSG00000250654 GC12P053837 GC12P053855
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HOXC13-AS on UCSC Golden Path with GeneCards custom track

Promoters for HOXC13-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000430935 343 1801 PKNOX1 SIN3A ZNF2 ZNF121 GLIS2 ZNF207 KLF7 FOS KDM4B DEK

Genomic Location for HOXC13-AS Gene

Chromosome:
12
Start:
53,935,328 bp from pter
End:
53,939,643 bp from pter
Size:
4,316 bases
Orientation:
Minus strand

Genomic View for HOXC13-AS Gene

Genes around HOXC13-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC13-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC13-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC13-AS Gene

Proteins for HOXC13-AS Gene

Post-translational modifications for HOXC13-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC13-AS Gene

Domains & Families for HOXC13-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC13-AS Gene

Function for HOXC13-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC13-AS Gene

Localization for HOXC13-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC13-AS Gene

Pathways & Interactions for HOXC13-AS Gene

SuperPathways for HOXC13-AS Gene

No Data Available

Interacting Proteins for HOXC13-AS Gene

Gene Ontology (GO) - Biological Process for HOXC13-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXC13-AS Gene

Transcripts for HOXC13-AS Gene

mRNA/cDNA for HOXC13-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC13-AS Gene

No ASD Table

Relevant External Links for HOXC13-AS Gene

GeneLoc Exon Structure for
HOXC13-AS
ECgene alternative splicing isoforms for
HOXC13-AS

Expression for HOXC13-AS Gene

mRNA expression in normal human tissues for HOXC13-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXC13-AS Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x22.2) and Skin - Not Sun Exposed (Suprapubic) (x21.2).
genes like me logo Genes that share expression patterns with HOXC13-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXC13-AS Gene

Orthologs for HOXC13-AS Gene

Evolution for HOXC13-AS Gene

ENSEMBL:
Gene Tree for HOXC13-AS (if available)
TreeFam:
Gene Tree for HOXC13-AS (if available)

No data available for Orthologs for HOXC13-AS Gene

Paralogs for HOXC13-AS Gene

No data available for Paralogs for HOXC13-AS Gene

Variants for HOXC13-AS Gene

Sequence variations from dbSNP and Humsavar for HOXC13-AS Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs398122377 Pathogenic 53,939,261(+) CCACC(-/C)TGGGC intron-variant, reference, frameshift-variant
rs398122913 Pathogenic 53,939,296(+) TACTA(A/C/T)GGCTG intron-variant, reference, synonymous-codon, stop-gained
rs10578693 -- 53,941,592(+) AAAAC(-/AAAAC)TCCAC intron-variant, upstream-variant-2KB
rs112130607 -- 53,937,088(+) CAGCC(C/T)GCAGC intron-variant, upstream-variant-2KB
rs112279889 -- 53,935,995(+) CCACA(-/T)TTTTT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HOXC13-AS Gene

Variant ID Type Subtype PubMed ID
nsv826379 CNV gain 20364138

Relevant External Links for HOXC13-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXC13-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC13-AS Gene

Disorders for HOXC13-AS Gene

Relevant External Links for HOXC13-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXC13-AS

No disorders were found for HOXC13-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC13-AS Gene

Publications for HOXC13-AS Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for HOXC13-AS Gene

Sources for HOXC13-AS Gene

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