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Aliases for HOXC13-AS Gene

Subcategory (RNA class) for HOXC13-AS Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOXC13-AS Gene

  • HOXC13 Antisense RNA 2 3 5
  • HOXC Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXC Cluster Antisense RNA 5 2
  • HOXC-AS5 3

External Ids for HOXC13-AS Gene

Previous HGNC Symbols for HOXC13-AS Gene

  • HOXC-AS5

Previous GeneCards Identifiers for HOXC13-AS Gene

  • GC12M054331

Summaries for HOXC13-AS Gene

GeneCards Summary for HOXC13-AS Gene

HOXC13-AS (HOXC13 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC13-AS Gene

Genomics for HOXC13-AS Gene

Regulatory Elements for HOXC13-AS Gene

Enhancers for HOXC13-AS Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HOXC13-AS on UCSC Golden Path with GeneCards custom track

Promoters for HOXC13-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HOXC13-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for HOXC13-AS Gene

53,935,328 bp from pter
53,939,643 bp from pter
4,316 bases
Minus strand

Genomic View for HOXC13-AS Gene

Genes around HOXC13-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC13-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC13-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC13-AS Gene

Proteins for HOXC13-AS Gene

Post-translational modifications for HOXC13-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC13-AS Gene

Domains & Families for HOXC13-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC13-AS Gene

Function for HOXC13-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC13-AS Gene

Localization for HOXC13-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC13-AS Gene

Pathways & Interactions for HOXC13-AS Gene

SuperPathways for HOXC13-AS Gene

No Data Available

Interacting Proteins for HOXC13-AS Gene

Gene Ontology (GO) - Biological Process for HOXC13-AS Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXC13-AS Gene

Drugs & Compounds for HOXC13-AS Gene

No Compound Related Data Available

Transcripts for HOXC13-AS Gene

mRNA/cDNA for HOXC13-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC13-AS Gene

No ASD Table

Relevant External Links for HOXC13-AS Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXC13-AS Gene

mRNA expression in normal human tissues for HOXC13-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXC13-AS Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x22.2) and Skin - Not Sun Exposed (Suprapubic) (x21.2).
genes like me logo Genes that share expression patterns with HOXC13-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HOXC13-AS Gene

Orthologs for HOXC13-AS Gene

Evolution for HOXC13-AS Gene

Gene Tree for HOXC13-AS (if available)
Gene Tree for HOXC13-AS (if available)

No data available for Orthologs for HOXC13-AS Gene

Paralogs for HOXC13-AS Gene

No data available for Paralogs for HOXC13-AS Gene

Variants for HOXC13-AS Gene

Sequence variations from dbSNP and Humsavar for HOXC13-AS Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1992563 -- 53,936,657(+) TTTCA(G/T)GCCCT intron-variant
rs112279889 -- 53,935,995(+) CCACA(-/T)TTTTT nc-transcript-variant
rs55733428 -- 53,935,732(+) CTTTC(A/G)TATAA nc-transcript-variant
rs57975373 -- 53,935,920(+) ATGTA(A/G)TTACT nc-transcript-variant
rs545104274 -- 53,934,830(+) GCCAG(A/C)ATCCA downstream-variant-500B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for HOXC13-AS Gene

Disorders for HOXC13-AS Gene

Relevant External Links for HOXC13-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HOXC13-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC13-AS Gene

Publications for HOXC13-AS Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 67

Products for HOXC13-AS Gene

Sources for HOXC13-AS Gene