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Aliases for HOXC13-AS Gene

Subcategory (RNA class) for HOXC13-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXC13-AS Gene

  • HOXC13 Antisense RNA 2 3 5
  • HOXC Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXC Cluster Antisense RNA 5 2
  • HOXC-AS5 3

External Ids for HOXC13-AS Gene

Previous HGNC Symbols for HOXC13-AS Gene

  • HOXC-AS5

Previous GeneCards Identifiers for HOXC13-AS Gene

  • GC12M054331

Summaries for HOXC13-AS Gene

GeneCards Summary for HOXC13-AS Gene

HOXC13-AS (HOXC13 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXC13-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC13-AS Gene

Genomics for HOXC13-AS Gene

GeneHancer (GH) Regulatory Elements for HOXC13-AS Gene

Promoters and enhancers for HOXC13-AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I053938 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 556.2 +0.1 142 3 PKNOX1 CLOCK SIN3A ZNF2 ZNF213 ZNF207 FOS KLF13 DEK SP3 HOXC13-AS HOXC13 HNRNPA1 ZNF740 AAAS ATF7 ENSG00000258344 CSAD CBX5 PFDN5
GH12I053971 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.7 -50.6 -50600 36.8 FEZF1 DMAP1 IRF4 ZNF213 ZNF416 ZNF143 ZNF548 SP3 NFYC ZNF610 HOXC11 HOXC9 HOXC6 HOXC10 GC12P054010 GC12P054044 MIR196A2 HNRNPA1 ZNF740 ENSG00000258344
GH12I054051 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.4 -113.9 -113874 4.8 HDGF PKNOX1 SMAD1 ARNT FEZF1 ZNF2 ZNF213 ZNF143 SP3 JUNB HOXC4 AAAS ATF7 RARG HNRNPA1 ENSG00000260470 PCBP2 HOTAIR SP1 IGFBP6
GH12I054195 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.5 -257.0 -257033 3.1 HDGF PKNOX1 KLF17 ZNF335 ZNF121 GLIS2 ZNF366 SMARCC2 KLF7 FOS HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5 LOC102724030
GH12I053962 Enhancer 1.1 ENCODE dbSUPER 11.8 -27.0 -27035 7.5 PKNOX1 ZNF133 SIN3A FEZF1 ZNF2 GLIS2 ZNF302 DEK SP3 REST ENSG00000274817 ENSG00000277129 ENSG00000277994 HOTAIR MAP3K12 HOXC6 MIR196A2 HOXC5 HOXC13 HOXC13-AS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HOXC13-AS on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOXC13-AS Gene

Genomic Locations for HOXC13-AS Gene
chr12:53,935,328-53,939,643
(GRCh38/hg38)
Size:
4,316 bases
Orientation:
Minus strand
chr12:54,329,112-54,333,427
(GRCh37/hg19)

Genomic View for HOXC13-AS Gene

Genes around HOXC13-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC13-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC13-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC13-AS Gene

Proteins for HOXC13-AS Gene

Post-translational modifications for HOXC13-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC13-AS Gene

Domains & Families for HOXC13-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC13-AS Gene

Function for HOXC13-AS Gene

Phenotypes From GWAS Catalog for HOXC13-AS Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC13-AS Gene

Localization for HOXC13-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXC13-AS Gene

Pathways & Interactions for HOXC13-AS Gene

SuperPathways for HOXC13-AS Gene

No Data Available

Interacting Proteins for HOXC13-AS Gene

Gene Ontology (GO) - Biological Process for HOXC13-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXC13-AS Gene

Drugs & Compounds for HOXC13-AS Gene

No Compound Related Data Available

Transcripts for HOXC13-AS Gene

mRNA/cDNA for HOXC13-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC13-AS Gene

No ASD Table

Relevant External Links for HOXC13-AS Gene

GeneLoc Exon Structure for
HOXC13-AS
ECgene alternative splicing isoforms for
HOXC13-AS

Expression for HOXC13-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXC13-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXC13-AS Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x22.2) and Skin - Not Sun Exposed (Suprapubic) (x21.2).
genes like me logo Genes that share expression patterns with HOXC13-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXC13-AS Gene

Orthologs for HOXC13-AS Gene

Evolution for HOXC13-AS Gene

ENSEMBL:
Gene Tree for HOXC13-AS (if available)
TreeFam:
Gene Tree for HOXC13-AS (if available)

No data available for Orthologs for HOXC13-AS Gene

Paralogs for HOXC13-AS Gene

No data available for Paralogs for HOXC13-AS Gene

Variants for HOXC13-AS Gene

Sequence variations from dbSNP and Humsavar for HOXC13-AS Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs398122377 pathogenic, Ectodermal dysplasia 9, hair/nail type 53,939,259(-) CCC/CC intron_variant
rs398122913 pathogenic, Ectodermal dysplasia 9, hair/nail type 53,939,296(-) C/A/G/T intron_variant
rs1000039708 -- 53,939,835(-) T/C upstream_transcript_variant
rs1000042240 -- 53,935,143(-) G/A downstream_transcript_variant
rs1000091934 -- 53,940,069(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HOXC13-AS Gene

Variant ID Type Subtype PubMed ID
nsv826379 CNV gain 20364138

Additional Variant Information for HOXC13-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXC13-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC13-AS Gene

Disorders for HOXC13-AS Gene

Additional Disease Information for HOXC13-AS

No disorders were found for HOXC13-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC13-AS Gene

Publications for HOXC13-AS Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for HOXC13-AS Gene

Sources for HOXC13-AS Gene

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