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Aliases for HOXC13-AS Gene

Subcategory (RNA class) for HOXC13-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXC13-AS Gene

  • HOXC13 Antisense RNA 2 3 5
  • HOXC Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXC Cluster Antisense RNA 5 2
  • HOXC-AS5 3

External Ids for HOXC13-AS Gene

Previous HGNC Symbols for HOXC13-AS Gene

  • HOXC-AS5

Previous GeneCards Identifiers for HOXC13-AS Gene

  • GC12M054331

Summaries for HOXC13-AS Gene

GeneCards Summary for HOXC13-AS Gene

HOXC13-AS (HOXC13 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC13-AS Gene

Genomics for HOXC13-AS Gene

Regulatory Elements for HOXC13-AS Gene

Enhancers for HOXC13-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G053971 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -50.6 -50600 36.8 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 ZNF740 MAP3K12 ENSG00000258344 LOC100652999 HOXC8 HOXC5 SP1 HOTAIR CBX5 HOXC4
GH12G053962 1.4 ENCODE dbSUPER 11.8 -27.0 -27036 7.5 CREB3L1 DMAP1 FEZF1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 MCM3 SP3 HOXC8 HOXC9 MAP3K12 HOXC5 HOTAIR HOXC6 HOXC4 SP1 SPRYD3 ENSG00000258086
GH12G054195 1.5 FANTOM5 Ensembl ENCODE 10.5 -257.0 -257033 3.1 HDGF PKNOX1 KLF17 ZNF121 GLIS2 ZNF366 SMARCC2 FOS KLF7 KDM4B MAP3K12 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5
GH12G053844 1.1 ENCODE dbSUPER 10.9 +93.9 93872 2.8 PKNOX1 NFIB RAD21 ZBTB7B RFX5 ZNF121 RCOR1 FOS SMARCC1 CEBPB HOXC13 HOXC13-AS HOXC6 HOXC4 HOXC5 MIR615 LOC100240735 GC12P053837 GC12P053855
GH12G053806 1.1 ENCODE dbSUPER 10.7 +132.9 132859 0.7 PTBP1 ARNT INSM2 KLF17 FEZF1 FOS KLF7 CREM ZNF263 YY2 HOXC13 HOXC13-AS HOXC6 HOXC9 HOXC-AS1 HOXC-AS2 HOXC8 RN7SKP289 GC12M053768
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXC13-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for HOXC13-AS Gene

Chromosome:
12
Start:
53,935,328 bp from pter
End:
53,939,643 bp from pter
Size:
4,316 bases
Orientation:
Minus strand

Genomic View for HOXC13-AS Gene

Genes around HOXC13-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC13-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC13-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC13-AS Gene

Proteins for HOXC13-AS Gene

Post-translational modifications for HOXC13-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC13-AS Gene

Domains & Families for HOXC13-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC13-AS Gene

Function for HOXC13-AS Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC13-AS Gene

Localization for HOXC13-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC13-AS Gene

Pathways & Interactions for HOXC13-AS Gene

SuperPathways for HOXC13-AS Gene

No Data Available

Interacting Proteins for HOXC13-AS Gene

Gene Ontology (GO) - Biological Process for HOXC13-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXC13-AS Gene

Drugs & Compounds for HOXC13-AS Gene

No Compound Related Data Available

Transcripts for HOXC13-AS Gene

mRNA/cDNA for HOXC13-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC13-AS Gene

No ASD Table

Relevant External Links for HOXC13-AS Gene

GeneLoc Exon Structure for
HOXC13-AS
ECgene alternative splicing isoforms for
HOXC13-AS

Expression for HOXC13-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXC13-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXC13-AS Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x22.2) and Skin - Not Sun Exposed (Suprapubic) (x21.2).
genes like me logo Genes that share expression patterns with HOXC13-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXC13-AS Gene

Orthologs for HOXC13-AS Gene

Evolution for HOXC13-AS Gene

ENSEMBL:
Gene Tree for HOXC13-AS (if available)
TreeFam:
Gene Tree for HOXC13-AS (if available)

No data available for Orthologs for HOXC13-AS Gene

Paralogs for HOXC13-AS Gene

No data available for Paralogs for HOXC13-AS Gene

Variants for HOXC13-AS Gene

Sequence variations from dbSNP and Humsavar for HOXC13-AS Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs398122377 Pathogenic 53,939,261(+) CCACC(-/C)TGGGC intron-variant, reference, frameshift-variant
rs398122913 Pathogenic 53,939,296(+) TACTA(A/C/T)GGCTG intron-variant, reference, synonymous-codon, stop-gained
rs1000039708 -- 53,939,835(+) CTCTG(C/T)AGCTG intron-variant, upstream-variant-2KB
rs1000042240 -- 53,935,143(+) CATCA(A/G)GCTTG downstream-variant-500B
rs1000091934 -- 53,940,069(+) AAGAA(A/C)CCCCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXC13-AS Gene

Variant ID Type Subtype PubMed ID
nsv826379 CNV gain 20364138

Relevant External Links for HOXC13-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXC13-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC13-AS Gene

Disorders for HOXC13-AS Gene

Relevant External Links for HOXC13-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXC13-AS

No disorders were found for HOXC13-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC13-AS Gene

Publications for HOXC13-AS Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for HOXC13-AS Gene

Sources for HOXC13-AS Gene

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