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Aliases for HOXC13-AS Gene

Subcategory (RNA class) for HOXC13-AS Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HOXC13-AS Gene

  • HOXC13 Antisense RNA 2 3
  • HOXC Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXC Cluster Antisense RNA 5 2
  • HOXC-AS5 3

External Ids for HOXC13-AS Gene

ORGUL Members for HOXC13-AS Gene

Previous HGNC Symbols for HOXC13-AS Gene

  • HOXC-AS5

Previous GeneCards Identifiers for HOXC13-AS Gene

  • GC12M054331

Summaries for HOXC13-AS Gene

GeneCards Summary for HOXC13-AS Gene

HOXC13-AS (HOXC13 Antisense RNA) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC13-AS Gene

Genomics for HOXC13-AS Gene

Genomic Location for HOXC13-AS Gene

Start:
53,935,328 bp from pter
End:
53,939,643 bp from pter
Size:
4,316 bases
Orientation:
Minus strand

Genomic View for HOXC13-AS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOXC13-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC13-AS Gene

No data available for Regulatory Elements for HOXC13-AS Gene

Proteins for HOXC13-AS Gene

Post-translational modifications for HOXC13-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC13-AS Gene

Domains for HOXC13-AS Gene

Gene Families for HOXC13-AS Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXC13-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC13-AS Gene

Function for HOXC13-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HOXC13-AS Gene

Localization for HOXC13-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC13-AS Gene

Pathways for HOXC13-AS Gene

SuperPathways for HOXC13-AS Gene

No Data Available

Interacting Proteins for HOXC13-AS Gene

Gene Ontology (GO) - Biological Process for HOXC13-AS Gene

None

No data available for Pathways by source for HOXC13-AS Gene

Transcripts for HOXC13-AS Gene

mRNA/cDNA for HOXC13-AS Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC13-AS Gene

No ASD Table

Relevant External Links for HOXC13-AS Gene

GeneLoc Exon Structure for
HOXC13-AS
ECgene alternative splicing isoforms for
HOXC13-AS

Expression for HOXC13-AS Gene

mRNA expression in normal human tissues for HOXC13-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXC13-AS Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (22.2) and Skin - Not Sun Exposed (Suprapubic) (21.2).
genes like me logo Genes that share expressions with HOXC13-AS: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HOXC13-AS Gene

Orthologs for HOXC13-AS Gene

Evolution for HOXC13-AS Gene

ENSEMBL:
Gene Tree for HOXC13-AS (if available)
TreeFam:
Gene Tree for HOXC13-AS (if available)

No data available for Orthologs for HOXC13-AS Gene

Paralogs for HOXC13-AS Gene

No data available for Paralogs for HOXC13-AS Gene

Variants for HOXC13-AS Gene

Sequence variations from dbSNP and Humsavar for HOXC13-AS Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs1867299 -- 53,936,191(+) AATTG(C/T)TCAGA nc-transcript-variant
rs1992563 -- 53,936,657(+) TTTCA(G/T)GCCCT intron-variant
rs4759308 -- 53,935,247(+) CAGAC(A/T)TCTGC downstream-variant-500B
rs55733428 -- 53,935,732(+) CTTTC(A/G)TATAA nc-transcript-variant
rs57975373 -- 53,935,920(+) ATGTA(A/G)TTACT nc-transcript-variant

Relevant External Links for HOXC13-AS Gene

HapMap Linkage Disequilibrium report
HOXC13-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HOXC13-AS Gene

Disorders for HOXC13-AS Gene

No disorders were found for HOXC13-AS Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HOXC13-AS Gene

Publications for HOXC13-AS Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3

Products for HOXC13-AS Gene

Sources for HOXC13-AS Gene

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