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Aliases for HOXC-AS3 Gene

Subcategory (RNA class) for HOXC-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOXC-AS3 Gene

  • HOXC Cluster Antisense RNA 3 2 3 5
  • HOXC Cluster Antisense RNA 3 (Non-Protein Coding) 2

External Ids for HOXC-AS3 Gene

Previous GeneCards Identifiers for HOXC-AS3 Gene

  • GC12M054375

Summaries for HOXC-AS3 Gene

GeneCards Summary for HOXC-AS3 Gene

HOXC-AS3 (HOXC Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXC-AS3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC-AS3 Gene

Genomics for HOXC-AS3 Gene

Regulatory Elements for HOXC-AS3 Gene

Enhancers for HOXC-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H054195 1.5 FANTOM5 Ensembl ENCODE 11.5 -211.2 -211157 3.1 HDGF PKNOX1 TBL1XR1 KLF17 ZNF121 GLIS2 ZNF366 SMARCC2 FOS KLF7 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5 LOC102724030
GH12H054191 1.2 Ensembl ENCODE 11.3 -206.2 -206219 0.9 ATF1 ARID4B SIN3A ZNF2 ZNF143 KLF7 ATF7 DEK SP3 YY2 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR615 HOXC4 HOXC5 MAP3K12 LOC102724030
GH12H054051 1.1 ENCODE 11.2 -68.0 -67999 4.8 HDGF PKNOX1 ARNT FEZF1 ZNF2 ZNF143 SP3 JUNB ZNF610 ZSCAN16 AAAS ATF7 RARG CBX5 HNRNPA1 ENSG00000260470 LOC105378250 PCBP2 SP1 HOTAIR
GH12H054130 1.1 ENCODE dbSUPER 10.9 -149.2 -149245 8.3 FOXA2 ZSCAN4 KLF17 FEZF1 RAD21 RARA ZNF121 MIXL1 EGR2 ZNF654 FLJ12825 TARBP2 SMUG1 MIR615 HOXC4 HOXC5 HOXC6 ENSG00000260470 HOXC8 HOXC-AS2
GH12H054188 1 ENCODE 11.3 -203.6 -203587 1 PKNOX1 ATF1 ARNT ARID4B SIN3A ETS1 ZNF766 GLIS2 GATA2 ELK1 FLJ12825 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 ENSG00000257605 MIR615 HOXC4 HOXC5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXC-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOXC-AS3 Gene

Genomic Locations for HOXC-AS3 Gene
4,011 bases
Minus strand

Genomic View for HOXC-AS3 Gene

Genes around HOXC-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC-AS3 Gene

Proteins for HOXC-AS3 Gene

Post-translational modifications for HOXC-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC-AS3 Gene

Domains & Families for HOXC-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC-AS3 Gene

Function for HOXC-AS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC-AS3 Gene

Localization for HOXC-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXC-AS3 Gene

Pathways & Interactions for HOXC-AS3 Gene

SuperPathways for HOXC-AS3 Gene

No Data Available

Interacting Proteins for HOXC-AS3 Gene

Gene Ontology (GO) - Biological Process for HOXC-AS3 Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXC-AS3 Gene

Drugs & Compounds for HOXC-AS3 Gene

No Compound Related Data Available

Transcripts for HOXC-AS3 Gene

mRNA/cDNA for HOXC-AS3 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC-AS3 Gene

No ASD Table

Relevant External Links for HOXC-AS3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXC-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXC-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXC-AS3 Gene

This gene is overexpressed in Kidney - Cortex (x12.4), Skin - Sun Exposed (Lower leg) (x4.7), Muscle - Skeletal (x4.4), and Artery - Tibial (x4.2).
genes like me logo Genes that share expression patterns with HOXC-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXC-AS3 Gene

Orthologs for HOXC-AS3 Gene

Evolution for HOXC-AS3 Gene

Gene Tree for HOXC-AS3 (if available)
Gene Tree for HOXC-AS3 (if available)

No data available for Orthologs for HOXC-AS3 Gene

Paralogs for HOXC-AS3 Gene

No data available for Paralogs for HOXC-AS3 Gene

Variants for HOXC-AS3 Gene

Sequence variations from dbSNP and Humsavar for HOXC-AS3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000665051 -- 53,984,568(+) CCTTA(A/T)CTTTT intron-variant, upstream-variant-2KB
rs1000946141 -- 53,985,009(+) GCGCT(C/T)CGCCT nc-transcript-variant, upstream-variant-2KB
rs1001329145 -- 53,987,430(+) AAGGG(A/G)GAGAG intron-variant, upstream-variant-2KB
rs1001899322 -- 53,984,434(+) GCTGG(A/T)GATTC intron-variant, upstream-variant-2KB
rs1002005271 -- 53,983,785(+) CCTTC(A/G)GAAAG downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXC-AS3 Gene

Variant ID Type Subtype PubMed ID
nsv826379 CNV gain 20364138
nsv428282 CNV gain 18775914
nsv1136151 CNV deletion 24896259
nsv1070111 CNV deletion 25765185
esv2759900 CNV gain+loss 17122850

Relevant External Links for HOXC-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC-AS3 Gene

Disorders for HOXC-AS3 Gene

Relevant External Links for HOXC-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HOXC-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC-AS3 Gene

Publications for HOXC-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for HOXC-AS3 Gene

Sources for HOXC-AS3 Gene

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