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Aliases for HOXC-AS3 Gene

Subcategory (RNA class) for HOXC-AS3 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HOXC-AS3 Gene

  • HOXC Cluster Antisense RNA 3 2 3
  • HOXC Cluster Antisense RNA 3 (Non-Protein Coding) 2

External Ids for HOXC-AS3 Gene

ORGUL Members for HOXC-AS3 Gene

Previous GeneCards Identifiers for HOXC-AS3 Gene

  • GC12M054375

Summaries for HOXC-AS3 Gene

GeneCards Summary for HOXC-AS3 Gene

HOXC-AS3 (HOXC Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC-AS3 Gene

Genomics for HOXC-AS3 Gene

Genomic Location for HOXC-AS3 Gene

Start:
53,981,509 bp from pter
End:
53,985,519 bp from pter
Size:
4,011 bases
Orientation:
Minus strand

Genomic View for HOXC-AS3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOXC-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC-AS3 Gene

No data available for Regulatory Elements for HOXC-AS3 Gene

Proteins for HOXC-AS3 Gene

Post-translational modifications for HOXC-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC-AS3 Gene

Domains for HOXC-AS3 Gene

Gene Families for HOXC-AS3 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXC-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC-AS3 Gene

Function for HOXC-AS3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HOXC-AS3 Gene

Localization for HOXC-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC-AS3 Gene

Pathways for HOXC-AS3 Gene

SuperPathways for HOXC-AS3 Gene

No Data Available

Interacting Proteins for HOXC-AS3 Gene

Gene Ontology (GO) - Biological Process for HOXC-AS3 Gene

None

No data available for Pathways by source for HOXC-AS3 Gene

Transcripts for HOXC-AS3 Gene

mRNA/cDNA for HOXC-AS3 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC-AS3 Gene

No ASD Table

Relevant External Links for HOXC-AS3 Gene

GeneLoc Exon Structure for
HOXC-AS3
ECgene alternative splicing isoforms for
HOXC-AS3

Expression for HOXC-AS3 Gene

mRNA expression in normal human tissues for HOXC-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXC-AS3 Gene

This gene is overexpressed in Kidney - Cortex (12.4), Skin - Sun Exposed (Lower leg) (4.7), Muscle - Skeletal (4.4), and Artery - Tibial (4.2).
genes like me logo Genes that share expressions with HOXC-AS3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HOXC-AS3 Gene

Orthologs for HOXC-AS3 Gene

Evolution for HOXC-AS3 Gene

ENSEMBL:
Gene Tree for HOXC-AS3 (if available)
TreeFam:
Gene Tree for HOXC-AS3 (if available)

No data available for Orthologs for HOXC-AS3 Gene

Paralogs for HOXC-AS3 Gene

No data available for Paralogs for HOXC-AS3 Gene

Variants for HOXC-AS3 Gene

Sequence variations from dbSNP and Humsavar for HOXC-AS3 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs7957202 -- 53,982,702(+) ATTCC(C/G)AAGCG nc-transcript-variant
rs11170778 -- 53,981,037(+) TTCGG(A/G)ATTCG downstream-variant-500B
rs12422555 -- 53,982,480(+) GCAGC(A/T)CCGGG nc-transcript-variant
rs12425213 -- 53,982,780(+) AGGCC(C/G)ATGGG nc-transcript-variant
rs34823510 -- 53,983,056(+) TGGGG(-/A)AAAGG nc-transcript-variant

Relevant External Links for HOXC-AS3 Gene

HapMap Linkage Disequilibrium report
HOXC-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HOXC-AS3 Gene

Disorders for HOXC-AS3 Gene

No disorders were found for HOXC-AS3 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HOXC-AS3 Gene

Publications for HOXC-AS3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for HOXC-AS3 Gene

Sources for HOXC-AS3 Gene

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