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Aliases for HOXC-AS2 Gene

Subcategory (RNA class) for HOXC-AS2 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HOXC-AS2 Gene

  • HOXC Cluster Antisense RNA 2 2 3
  • HOXC Cluster Antisense RNA 2 (Non-Protein Coding) 2

External Ids for HOXC-AS2 Gene

ORGUL Members for HOXC-AS2 Gene

Previous GeneCards Identifiers for HOXC-AS2 Gene

  • GC12M054389

Summaries for HOXC-AS2 Gene

GeneCards Summary for HOXC-AS2 Gene

HOXC-AS2 (HOXC Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC-AS2 Gene

Genomics for HOXC-AS2 Gene

Genomic Location for HOXC-AS2 Gene

Start:
53,993,810 bp from pter
End:
53,996,785 bp from pter
Size:
2,976 bases
Orientation:
Minus strand

Genomic View for HOXC-AS2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOXC-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC-AS2 Gene

No data available for Regulatory Elements for HOXC-AS2 Gene

Proteins for HOXC-AS2 Gene

Post-translational modifications for HOXC-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC-AS2 Gene

Domains for HOXC-AS2 Gene

Gene Families for HOXC-AS2 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXC-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC-AS2 Gene

Function for HOXC-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HOXC-AS2 Gene

Localization for HOXC-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC-AS2 Gene

Pathways for HOXC-AS2 Gene

SuperPathways for HOXC-AS2 Gene

No Data Available

Interacting Proteins for HOXC-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXC-AS2 Gene

None

No data available for Pathways by source for HOXC-AS2 Gene

Transcripts for HOXC-AS2 Gene

mRNA/cDNA for HOXC-AS2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC-AS2 Gene

No ASD Table

Relevant External Links for HOXC-AS2 Gene

GeneLoc Exon Structure for
HOXC-AS2
ECgene alternative splicing isoforms for
HOXC-AS2

Expression for HOXC-AS2 Gene

mRNA expression in normal human tissues for HOXC-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXC-AS2 Gene

This gene is overexpressed in Kidney - Cortex (11.2), Fallopian Tube (6.4), and Artery - Tibial (4.1).
genes like me logo Genes that share expressions with HOXC-AS2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for HOXC-AS2 Gene

Orthologs for HOXC-AS2 Gene

Evolution for HOXC-AS2 Gene

ENSEMBL:
Gene Tree for HOXC-AS2 (if available)
TreeFam:
Gene Tree for HOXC-AS2 (if available)

No data available for Orthologs for HOXC-AS2 Gene

Paralogs for HOXC-AS2 Gene

No data available for Paralogs for HOXC-AS2 Gene

Variants for HOXC-AS2 Gene

Sequence variations from dbSNP and Humsavar for HOXC-AS2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs10876526 -- 53,997,077(+) CGCAG(A/G)GTGGG upstream-variant-2KB
rs11170780 -- 53,996,948(+) GAGTT(A/C)GGAGG upstream-variant-2KB
rs12319437 -- 53,997,094(+) GGGTG(C/G)GCAGG upstream-variant-2KB
rs12581834 -- 53,995,784(+) TCCTG(C/G)TGGGC intron-variant
rs17721037 -- 53,995,491(+) CTCAG(A/T)CTGGG nc-transcript-variant

Relevant External Links for HOXC-AS2 Gene

HapMap Linkage Disequilibrium report
HOXC-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HOXC-AS2 Gene

Disorders for HOXC-AS2 Gene

No disorders were found for HOXC-AS2 Gene.

No data available for UniProtKB/Swiss-Prot for HOXC-AS2 Gene

Publications for HOXC-AS2 Gene

No publications were found for HOXC-AS2 Gene.

Products for HOXC-AS2 Gene

Sources for HOXC-AS2 Gene

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