Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HOXC-AS2 Gene

Subcategory (RNA class) for HOXC-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXC-AS2 Gene

  • HOXC Cluster Antisense RNA 2 2 3 5
  • HOXC Cluster Antisense RNA 2 (Non-Protein Coding) 2

External Ids for HOXC-AS2 Gene

Previous GeneCards Identifiers for HOXC-AS2 Gene

  • GC12M054389

Summaries for HOXC-AS2 Gene

GeneCards Summary for HOXC-AS2 Gene

HOXC-AS2 (HOXC Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC-AS2 Gene

Genomics for HOXC-AS2 Gene

Regulatory Elements for HOXC-AS2 Gene

Enhancers for HOXC-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F054195 1.2 FANTOM5 Ensembl ENCODE 12.6 -199.9 -199891 3.1 HDGF PKNOX1 KLF17 ZNF121 GLIS2 ZNF366 SMARCC2 KLF7 FOS KDM4B MAP3K12 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5
GH12F054201 0.2 ENCODE 12.6 -204.7 -204727 0.2 CTCF SUZ12 MAX RAD21 ZNF101 RFX5 ADNP SMC3 ZNF143 RCOR1 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5 HOXC-AS3
GH12F054191 0.8 Ensembl ENCODE 12 -194.9 -194917 1.0 ELF3 TBL1XR1 WRNIP1 ZNF76 KLF17 ARID4B ZBTB40 ZNF2 RAD21 ZEB1 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR615 HOXC4 HOXC5 LOC102724030 MIR196A2
GH12F054188 0.9 ENCODE 12 -192.3 -192321 1.0 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A ETS1 GLIS2 GATA2 ELK1 ZNF143 FLJ12825 HOXC8 HOXC-AS2 HOXC9 HOXC-AS1 HOXC6 MIR615 HOXC4 HOXC5 LOC102724030
GH12F053962 0.2 ENCODE 11.7 +30.1 30107 7.5 CREB3L1 DMAP1 FEZF1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 MCM3 SP3 HOXC8 HOXC9 AAAS SP1 ENSG00000258344 HOXC5 HOTAIR HOXC6 HOXC4 ZNF740
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HOXC-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for HOXC-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001463711 -815 401 HDAC1 PKNOX1 KLF17 FEZF1 ZNF2 ZNF335 GLIS2 ZNF366 KDM4B CREM
ENSR00001777444 1585 2801 HDGF PKNOX1 SIN3A FEZF1 DMAP1 ZNF2 SP3 ZHX2 REST SMARCB1

Genomic Location for HOXC-AS2 Gene

Chromosome:
12
Start:
53,993,810 bp from pter
End:
53,996,785 bp from pter
Size:
2,976 bases
Orientation:
Minus strand

Genomic View for HOXC-AS2 Gene

Genes around HOXC-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC-AS2 Gene

Proteins for HOXC-AS2 Gene

Post-translational modifications for HOXC-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC-AS2 Gene

Domains & Families for HOXC-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC-AS2 Gene

Function for HOXC-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC-AS2 Gene

Localization for HOXC-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC-AS2 Gene

Pathways & Interactions for HOXC-AS2 Gene

SuperPathways for HOXC-AS2 Gene

No Data Available

Interacting Proteins for HOXC-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXC-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXC-AS2 Gene

Transcripts for HOXC-AS2 Gene

mRNA/cDNA for HOXC-AS2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC-AS2 Gene

No ASD Table

Relevant External Links for HOXC-AS2 Gene

GeneLoc Exon Structure for
HOXC-AS2
ECgene alternative splicing isoforms for
HOXC-AS2

Expression for HOXC-AS2 Gene

mRNA expression in normal human tissues for HOXC-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXC-AS2 Gene

This gene is overexpressed in Kidney - Cortex (x11.2), Fallopian Tube (x6.4), and Artery - Tibial (x4.1).
genes like me logo Genes that share expression patterns with HOXC-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXC-AS2 Gene

Orthologs for HOXC-AS2 Gene

Evolution for HOXC-AS2 Gene

ENSEMBL:
Gene Tree for HOXC-AS2 (if available)
TreeFam:
Gene Tree for HOXC-AS2 (if available)

No data available for Orthologs for HOXC-AS2 Gene

Paralogs for HOXC-AS2 Gene

No data available for Paralogs for HOXC-AS2 Gene

Variants for HOXC-AS2 Gene

Sequence variations from dbSNP and Humsavar for HOXC-AS2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10876526 -- 53,997,077(+) CGCAG(A/G)GTGGG upstream-variant-2KB
rs11170780 -- 53,996,948(+) GAGTT(A/C)GGAGG upstream-variant-2KB
rs111732514 -- 53,997,760(+) TTTCA(C/G)TTGGT upstream-variant-2KB
rs113050491 -- 53,998,386(+) TCTCC(A/T)CCCCA upstream-variant-2KB
rs114312944 -- 53,996,880(+) TGGCT(A/G)GGAAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXC-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2759900 CNV gain+loss 17122850
nsv428282 CNV gain 18775914
nsv826379 CNV gain 20364138

Relevant External Links for HOXC-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXC-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC-AS2 Gene

Disorders for HOXC-AS2 Gene

Relevant External Links for HOXC-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXC-AS2

No disorders were found for HOXC-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC-AS2 Gene

Publications for HOXC-AS2 Gene

No publications were found for HOXC-AS2 Gene.

Products for HOXC-AS2 Gene

Sources for HOXC-AS2 Gene

Content
Loading form....