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Aliases for HOXC-AS2 Gene

Subcategory (RNA class) for HOXC-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXC-AS2 Gene

  • HOXC Cluster Antisense RNA 2 2 3 5
  • HOXC Cluster Antisense RNA 2 (Non-Protein Coding) 2

External Ids for HOXC-AS2 Gene

Previous GeneCards Identifiers for HOXC-AS2 Gene

  • GC12M054389

Summaries for HOXC-AS2 Gene

GeneCards Summary for HOXC-AS2 Gene

HOXC-AS2 (HOXC Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC-AS2 Gene

Genomics for HOXC-AS2 Gene

Regulatory Elements for HOXC-AS2 Gene

Enhancers for HOXC-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G054195 1.5 FANTOM5 Ensembl ENCODE 12.6 -199.9 -199891 3.1 HDGF PKNOX1 KLF17 ZNF121 GLIS2 ZNF366 SMARCC2 FOS KLF7 KDM4B MAP3K12 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5
GH12G054215 1.6 FANTOM5 Ensembl ENCODE 11.7 -220.3 -220316 2.6 HDGF PKNOX1 ATF1 ARNT E2F7 SIN3A ZNF2 ETS1 ZNF121 GLIS2 GPR84 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 HOXC4 HOXC5 ENSG00000257534 FLJ12825
GH12G053962 1.4 ENCODE dbSUPER 11.7 +30.1 30107 7.5 CREB3L1 DMAP1 FEZF1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 MCM3 SP3 HOXC8 HOXC9 MAP3K12 HOXC5 HOTAIR HOXC6 HOXC4 SP1 SPRYD3 ENSG00000258086
GH12G054191 1.2 Ensembl ENCODE 12 -195.0 -194953 0.9 ATF1 WRNIP1 ARID4B SIN3A ZNF2 ZNF143 KLF7 DEK SP3 YY2 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR615 HOXC4 HOXC5 MAP3K12 LOC102724030
GH12G054130 1.2 ENCODE dbSUPER 11 -138.0 -137979 8.3 FOXA2 ZSCAN4 KLF17 FEZF1 RAD21 RARA ZNF121 MIXL1 DEK EGR2 FLJ12825 TARBP2 SMUG1 MIR615 HOXC4 HOXC5 HOXC6 ENSG00000260470 HOXC8 HOXC-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXC-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for HOXC-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000052274 785 401 HDGF PKNOX1 ATF1 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 KLF7 KDM4B

Genomic Location for HOXC-AS2 Gene

Chromosome:
12
Start:
53,993,810 bp from pter
End:
53,996,785 bp from pter
Size:
2,976 bases
Orientation:
Minus strand

Genomic View for HOXC-AS2 Gene

Genes around HOXC-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC-AS2 Gene

Proteins for HOXC-AS2 Gene

Post-translational modifications for HOXC-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC-AS2 Gene

Domains & Families for HOXC-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC-AS2 Gene

Function for HOXC-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC-AS2 Gene

Localization for HOXC-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC-AS2 Gene

Pathways & Interactions for HOXC-AS2 Gene

SuperPathways for HOXC-AS2 Gene

No Data Available

Interacting Proteins for HOXC-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXC-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXC-AS2 Gene

Drugs & Compounds for HOXC-AS2 Gene

No Compound Related Data Available

Transcripts for HOXC-AS2 Gene

mRNA/cDNA for HOXC-AS2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC-AS2 Gene

No ASD Table

Relevant External Links for HOXC-AS2 Gene

GeneLoc Exon Structure for
HOXC-AS2
ECgene alternative splicing isoforms for
HOXC-AS2

Expression for HOXC-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXC-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXC-AS2 Gene

This gene is overexpressed in Kidney - Cortex (x11.2), Fallopian Tube (x6.4), and Artery - Tibial (x4.1).
genes like me logo Genes that share expression patterns with HOXC-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXC-AS2 Gene

Orthologs for HOXC-AS2 Gene

Evolution for HOXC-AS2 Gene

ENSEMBL:
Gene Tree for HOXC-AS2 (if available)
TreeFam:
Gene Tree for HOXC-AS2 (if available)

No data available for Orthologs for HOXC-AS2 Gene

Paralogs for HOXC-AS2 Gene

No data available for Paralogs for HOXC-AS2 Gene

Variants for HOXC-AS2 Gene

Sequence variations from dbSNP and Humsavar for HOXC-AS2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000582919 -- 53,996,717(+) TCTGC(A/C)ACCCA nc-transcript-variant
rs1000641695 -- 53,996,444(+) CACAG(C/G)TGCGA intron-variant
rs1001942289 -- 53,994,868(+) GCTTC(C/T)CTCCC downstream-variant-500B
rs1002306028 -- 53,997,720(+) GCTCC(G/T)CTTCC upstream-variant-2KB
rs1003150435 -- 53,994,906(+) ATGGC(C/T)GTGGG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HOXC-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2759900 CNV gain+loss 17122850
nsv428282 CNV gain 18775914
nsv826379 CNV gain 20364138

Relevant External Links for HOXC-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXC-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC-AS2 Gene

Disorders for HOXC-AS2 Gene

Relevant External Links for HOXC-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXC-AS2

No disorders were found for HOXC-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC-AS2 Gene

Publications for HOXC-AS2 Gene

No publications were found for HOXC-AS2 Gene.

Products for HOXC-AS2 Gene

Sources for HOXC-AS2 Gene

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