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Aliases for HOXC-AS1 Gene

Subcategory (RNA class) for HOXC-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXC-AS1 Gene

  • HOXC Cluster Antisense RNA 1 2 3 5
  • HOXC Cluster Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HOXC-AS1 Gene

Previous GeneCards Identifiers for HOXC-AS1 Gene

  • GC12M054393

Summaries for HOXC-AS1 Gene

GeneCards Summary for HOXC-AS1 Gene

HOXC-AS1 (HOXC Cluster Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC-AS1 Gene

Genomics for HOXC-AS1 Gene

Regulatory Elements for HOXC-AS1 Gene

Enhancers for HOXC-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F053971 1.4 FANTOM5 Ensembl ENCODE 15.1 +9.8 9768 36.8 CREB3L1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 NFYC ZNF740 MAP3K12 SP1 ENSG00000258344 LOC100652999 HOXC8 HOXC5 PFDN5 HOTAIR IGFBP6
GH12F054009 1.9 VISTA FANTOM5 Ensembl ENCODE 12.9 -22.0 -21999 25.6 HDGF PKNOX1 ARNT WRNIP1 SIN3A FEZF1 YBX1 ZNF2 YY1 ZNF143 LOC105378250 HOXC8 HOXC-AS1 MAP3K12 ZNF740 C12orf10 HOXC4 FLJ12825 HOXC9 HOXC6
GH12F054195 1.2 FANTOM5 Ensembl ENCODE 12.6 -196.7 -196666 3.1 HDGF PKNOX1 KLF17 ZNF121 GLIS2 ZNF366 SMARCC2 KLF7 FOS KDM4B MAP3K12 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5
GH12F054201 0.2 ENCODE 12.6 -201.5 -201502 0.2 CTCF SUZ12 MAX RAD21 ZNF101 RFX5 ADNP SMC3 ZNF143 RCOR1 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5 HOXC-AS3
GH12F054188 0.9 ENCODE 12 -189.1 -189096 1.0 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A ETS1 GLIS2 GATA2 ELK1 ZNF143 FLJ12825 HOXC8 HOXC-AS2 HOXC9 HOXC-AS1 HOXC6 MIR615 HOXC4 HOXC5 LOC102724030
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HOXC-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HOXC-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001463713 10 2001 PKNOX1 ARNT SIN3A FEZF1 ZNF2 CBX5 ZNF143 DEK NFYC REST
ENSR00001777445 -1490 601 KLF17 ZIC2 GLIS2 ZBTB48 ZNF366 PATZ1 ZNF600 ZBTB20 EZH2 RNF2

Genomic Location for HOXC-AS1 Gene

Chromosome:
12
Start:
53,999,022 bp from pter
End:
54,000,010 bp from pter
Size:
989 bases
Orientation:
Minus strand

Genomic View for HOXC-AS1 Gene

Genes around HOXC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC-AS1 Gene

Proteins for HOXC-AS1 Gene

Post-translational modifications for HOXC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC-AS1 Gene

Domains & Families for HOXC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC-AS1 Gene

Function for HOXC-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC-AS1 Gene

Localization for HOXC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC-AS1 Gene

Pathways & Interactions for HOXC-AS1 Gene

SuperPathways for HOXC-AS1 Gene

No Data Available

Interacting Proteins for HOXC-AS1 Gene

Gene Ontology (GO) - Biological Process for HOXC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXC-AS1 Gene

Transcripts for HOXC-AS1 Gene

mRNA/cDNA for HOXC-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC-AS1 Gene

No ASD Table

Relevant External Links for HOXC-AS1 Gene

GeneLoc Exon Structure for
HOXC-AS1
ECgene alternative splicing isoforms for
HOXC-AS1

Expression for HOXC-AS1 Gene

mRNA expression in normal human tissues for HOXC-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HOXC-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x7.7), Skin - Sun Exposed (Lower leg) (x5.2), Fallopian Tube (x4.9), Adipose - Subcutaneous (x4.8), Skin - Not Sun Exposed (Suprapubic) (x4.6), and Artery - Tibial (x4.4).
genes like me logo Genes that share expression patterns with HOXC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXC-AS1 Gene

Orthologs for HOXC-AS1 Gene

Evolution for HOXC-AS1 Gene

ENSEMBL:
Gene Tree for HOXC-AS1 (if available)
TreeFam:
Gene Tree for HOXC-AS1 (if available)

No data available for Orthologs for HOXC-AS1 Gene

Paralogs for HOXC-AS1 Gene

No data available for Paralogs for HOXC-AS1 Gene

Variants for HOXC-AS1 Gene

Sequence variations from dbSNP and Humsavar for HOXC-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs115006165 -- 53,999,554(+) GCTGC(A/T)CCTGA intron-variant, upstream-variant-2KB
rs115066415 -- 53,998,756(+) AGCCC(C/T)CCTTT downstream-variant-500B, upstream-variant-2KB
rs116787002 -- 54,001,611(+) TGAGG(A/G)AGTGT intron-variant, upstream-variant-2KB
rs11829948 -- 54,000,553(+) GGACG(C/T)CTACC upstream-variant-2KB, reference, missense
rs12300425 -- 54,001,298(+) TCAAA(G/T)AGAAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXC-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759900 CNV gain+loss 17122850
nsv1143563 CNV deletion 24896259
nsv428282 CNV gain 18775914
nsv826379 CNV gain 20364138

Relevant External Links for HOXC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC-AS1 Gene

Disorders for HOXC-AS1 Gene

Relevant External Links for HOXC-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXC-AS1

No disorders were found for HOXC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC-AS1 Gene

Publications for HOXC-AS1 Gene

No publications were found for HOXC-AS1 Gene.

Products for HOXC-AS1 Gene

Sources for HOXC-AS1 Gene

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