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Aliases for HOXC-AS1 Gene

Subcategory (RNA class) for HOXC-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOXC-AS1 Gene

  • HOXC Cluster Antisense RNA 1 2 3 5
  • HOXC Cluster Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HOXC-AS1 Gene

Previous GeneCards Identifiers for HOXC-AS1 Gene

  • GC12M054393

Summaries for HOXC-AS1 Gene

GeneCards Summary for HOXC-AS1 Gene

HOXC-AS1 (HOXC Cluster Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC-AS1 Gene

Genomics for HOXC-AS1 Gene

Regulatory Elements for HOXC-AS1 Gene

Enhancers for HOXC-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F054009 2.2 VISTA FANTOM5 Ensembl ENCODE 12.9 -22.0 -21999 25.6 HDGF PKNOX1 ARNT WRNIP1 SIN3A FEZF1 YBX1 ZNF2 YY1 ZNF143 LOC105378250 HOXC8 HOXC-AS1 MAP3K12 ZNF740 C12orf10 HOXC4 FLJ12825 HOXC9 HOXC6
GH12F053971 1.8 FANTOM5 Ensembl ENCODE 15.1 +9.8 9768 36.8 CREB3L1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 NFYC ZNF740 MAP3K12 SP1 ENSG00000258344 LOC100652999 HOXC8 HOXC5 PFDN5 HOTAIR IGFBP6
GH12F054195 1.5 FANTOM5 Ensembl ENCODE 12.6 -196.7 -196666 3.1 HDGF PKNOX1 KLF17 ZNF121 GLIS2 ZNF366 SMARCC2 KLF7 FOS KDM4B MAP3K12 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5
GH12F054214 1.6 FANTOM5 Ensembl ENCODE 11.7 -216.4 -216392 4.0 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF207 ZNF143 KLF13 GPR84 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 HOXC4 HOXC5 LOC100240734 ENSG00000257534
GH12F054191 1.2 Ensembl ENCODE 12 -191.7 -191692 1.0 ELF3 TBL1XR1 WRNIP1 ZNF76 KLF17 ARID4B ZBTB40 ZNF2 RAD21 ZEB1 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR615 HOXC4 HOXC5 LOC102724030 MIR196A2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXC-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HOXC-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001777445 -1490 601 KLF17 ZIC2 GLIS2 ZBTB48 ZNF366 PATZ1 ZNF600 ZBTB20 EZH2 RNF2

Genomic Location for HOXC-AS1 Gene

53,999,022 bp from pter
54,000,010 bp from pter
989 bases
Minus strand

Genomic View for HOXC-AS1 Gene

Genes around HOXC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC-AS1 Gene

Proteins for HOXC-AS1 Gene

Post-translational modifications for HOXC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC-AS1 Gene

Domains & Families for HOXC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC-AS1 Gene

Function for HOXC-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC-AS1 Gene

Localization for HOXC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXC-AS1 Gene

Pathways & Interactions for HOXC-AS1 Gene

SuperPathways for HOXC-AS1 Gene

No Data Available

Interacting Proteins for HOXC-AS1 Gene

Gene Ontology (GO) - Biological Process for HOXC-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXC-AS1 Gene

Transcripts for HOXC-AS1 Gene

mRNA/cDNA for HOXC-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC-AS1 Gene

No ASD Table

Relevant External Links for HOXC-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXC-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HOXC-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x7.7), Skin - Sun Exposed (Lower leg) (x5.2), Fallopian Tube (x4.9), Adipose - Subcutaneous (x4.8), Skin - Not Sun Exposed (Suprapubic) (x4.6), and Artery - Tibial (x4.4).
genes like me logo Genes that share expression patterns with HOXC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXC-AS1 Gene

Orthologs for HOXC-AS1 Gene

Evolution for HOXC-AS1 Gene

Gene Tree for HOXC-AS1 (if available)
Gene Tree for HOXC-AS1 (if available)

No data available for Orthologs for HOXC-AS1 Gene

Paralogs for HOXC-AS1 Gene

No data available for Paralogs for HOXC-AS1 Gene

Variants for HOXC-AS1 Gene

Sequence variations from dbSNP and Humsavar for HOXC-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs115006165 -- 53,999,554(+) GCTGC(A/T)CCTGA intron-variant, upstream-variant-2KB
rs115066415 -- 53,998,756(+) AGCCC(C/T)CCTTT downstream-variant-500B, upstream-variant-2KB
rs116787002 -- 54,001,611(+) TGAGG(A/G)AGTGT intron-variant, upstream-variant-2KB
rs11829948 -- 54,000,553(+) GGACG(C/T)CTACC upstream-variant-2KB, reference, missense
rs12300425 -- 54,001,298(+) TCAAA(G/T)AGAAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXC-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv826379 CNV gain 20364138
nsv428282 CNV gain 18775914
nsv1143563 CNV deletion 24896259
esv2759900 CNV gain+loss 17122850

Relevant External Links for HOXC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC-AS1 Gene

Disorders for HOXC-AS1 Gene

Relevant External Links for HOXC-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HOXC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC-AS1 Gene

Publications for HOXC-AS1 Gene

No publications were found for HOXC-AS1 Gene.

Products for HOXC-AS1 Gene

Sources for HOXC-AS1 Gene

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