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Aliases for HOXC-AS1 Gene

Subcategory (RNA class) for HOXC-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXC-AS1 Gene

  • HOXC Cluster Antisense RNA 1 2 3 5
  • HOXC Cluster Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HOXC-AS1 Gene

Previous GeneCards Identifiers for HOXC-AS1 Gene

  • GC12M054393

Summaries for HOXC-AS1 Gene

GeneCards Summary for HOXC-AS1 Gene

HOXC-AS1 (HOXC Cluster Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXC-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXC-AS1 Gene

Genomics for HOXC-AS1 Gene

Regulatory Elements for HOXC-AS1 Gene

Enhancers for HOXC-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H054009 2.5 VISTA FANTOM5 Ensembl ENCODE dbSUPER 12.9 -22.1 -22093 25.8 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 CBX5 ZNF143 ZNF207 DEK RARG AAAS ATF7 ENSG00000260470 LOC105378250 HOXC8 SMUG1 IGFBP6 HOXC-AS1 CBX5
GH12H053971 2 FANTOM5 Ensembl ENCODE dbSUPER 15.1 +9.8 9768 36.8 PKNOX1 FOXA2 ARNT SIN3A FEZF1 DMAP1 ZNF2 ZNF766 ZNF416 ZNF207 HNRNPA1 ZNF740 ENSG00000258344 ATF7 PCBP2 MAP3K12 LOC100652999 SP1 CALCOCO1 AAAS
GH12H054195 1.5 FANTOM5 Ensembl ENCODE 12.6 -196.7 -196666 3.1 HDGF PKNOX1 TBL1XR1 KLF17 ZNF121 GLIS2 ZNF366 SMARCC2 FOS KLF7 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR196A2 MIR615 HOXC4 HOXC5 LOC102724030
GH12H054215 1.6 FANTOM5 Ensembl ENCODE 11.7 -217.1 -217091 2.6 HDGF PKNOX1 ATF1 ARNT SIN3A ZNF2 ETS1 ZNF121 GLIS2 ZNF143 GPR84 HOXC8 HOXC-AS1 HOXC6 HOXC-AS2 HOXC9 HOXC4 HOXC5 ENSG00000257534 FLJ12825
GH12H054191 1.2 Ensembl ENCODE 12.1 -191.7 -191728 0.9 ATF1 ARID4B SIN3A ZNF2 ZNF143 KLF7 ATF7 DEK SP3 YY2 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 MIR615 HOXC4 HOXC5 MAP3K12 LOC102724030
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXC-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HOXC-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000268436 -90 1401 PKNOX1 ATF1 SIN3A FEZF1 ZNF2 GLIS2 ATF7 NFYC ZNF488 REST

Genomic Locations for HOXC-AS1 Gene

Genomic Locations for HOXC-AS1 Gene
chr12:53,999,022-54,000,010
(GRCh38/hg38)
Size:
989 bases
Orientation:
Minus strand
chr12:54,392,806-54,393,794
(GRCh37/hg19)

Genomic View for HOXC-AS1 Gene

Genes around HOXC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXC-AS1 Gene

Proteins for HOXC-AS1 Gene

Post-translational modifications for HOXC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXC-AS1 Gene

Domains & Families for HOXC-AS1 Gene

Gene Families for HOXC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXC-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXC-AS1 Gene

Function for HOXC-AS1 Gene

Phenotypes From GWAS Catalog for HOXC-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXC-AS1 Gene

Localization for HOXC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXC-AS1 Gene

Pathways & Interactions for HOXC-AS1 Gene

SuperPathways for HOXC-AS1 Gene

No Data Available

Interacting Proteins for HOXC-AS1 Gene

Gene Ontology (GO) - Biological Process for HOXC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXC-AS1 Gene

Drugs & Compounds for HOXC-AS1 Gene

No Compound Related Data Available

Transcripts for HOXC-AS1 Gene

mRNA/cDNA for HOXC-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXC-AS1 Gene

No ASD Table

Relevant External Links for HOXC-AS1 Gene

GeneLoc Exon Structure for
HOXC-AS1
ECgene alternative splicing isoforms for
HOXC-AS1

Expression for HOXC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXC-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HOXC-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x7.7), Skin - Sun Exposed (Lower leg) (x5.2), Fallopian Tube (x4.9), Adipose - Subcutaneous (x4.8), Skin - Not Sun Exposed (Suprapubic) (x4.6), and Artery - Tibial (x4.4).
genes like me logo Genes that share expression patterns with HOXC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXC-AS1 Gene

Orthologs for HOXC-AS1 Gene

Evolution for HOXC-AS1 Gene

ENSEMBL:
Gene Tree for HOXC-AS1 (if available)
TreeFam:
Gene Tree for HOXC-AS1 (if available)

No data available for Orthologs for HOXC-AS1 Gene

Paralogs for HOXC-AS1 Gene

No data available for Paralogs for HOXC-AS1 Gene

Variants for HOXC-AS1 Gene

Sequence variations from dbSNP and Humsavar for HOXC-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000377526 -- 54,000,843(+) CGAGG(A/G)GGCGA intron-variant, upstream-variant-2KB
rs1001251239 -- 53,999,595(+) ACGCA(C/T)TTTTA intron-variant, upstream-variant-2KB
rs1001286191 -- 53,999,315(+) TAAAG(G/T)CGCCT intron-variant, upstream-variant-2KB
rs1001306719 -- 53,999,220(+) GGGAT(A/G)GGGAC nc-transcript-variant, upstream-variant-2KB
rs1002728112 -- 53,998,895(+) CACTG(A/C)CCCCT downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXC-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv826379 CNV gain 20364138
nsv428282 CNV gain 18775914
nsv1143563 CNV deletion 24896259
esv2759900 CNV gain+loss 17122850

Relevant External Links for HOXC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXC-AS1 Gene

Disorders for HOXC-AS1 Gene

Relevant External Links for HOXC-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXC-AS1

No disorders were found for HOXC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXC-AS1 Gene

Publications for HOXC-AS1 Gene

  1. Long Noncoding RNA HOXC-AS1 Suppresses Ox-LDL-Induced Cholesterol Accumulation Through Promoting HOXC6 Expression in THP-1 Macrophages. (PMID: 27574949) Huang C … Wang Q (DNA and cell biology 2016) 2 3 60

Products for HOXC-AS1 Gene

Sources for HOXC-AS1 Gene

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