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HOXB2 Gene(Protein Coding)

Homeobox B2

GCID:
GC17M048540
GIFtS:
54
Genes Participants
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Aliases for HOXB2 Gene

Aliases for HOXB2 Gene

  • Homeobox B2 2 3 5
  • Homeobox Protein Hox-2.8 3 4
  • Homeobox Protein Hox-2H 3 4
  • Homeo Box B2 2 3
  • HOX2H 3 4
  • K8 3 4
  • Homeobox Protein Hox-B2 3
  • K8 Home Protein 3
  • Homeo Box 2H 3
  • Hox-2.8 3
  • HOX2 3

External Ids for HOXB2 Gene

Previous HGNC Symbols for HOXB2 Gene

  • HOX2
  • HOX2H

Previous GeneCards Identifiers for HOXB2 Gene

  • GC17M046331
  • GC17M049100
  • GC17M046962
  • GC17M047094
  • GC17M043975
  • GC17M046620
  • GC17M041989

Summaries for HOXB2 Gene

Entrez Gene Summary for HOXB2 Gene

  • This gene is a member of the Antp homeobox family and encodes a nuclear protein with a homeobox DNA-binding domain. It is included in a cluster of homeobox B genes located on chromosome 17. The encoded protein functions as a sequence-specific transcription factor that is involved in development. Increased expression of this gene is associated with pancreatic cancer. [provided by RefSeq, Jul 2008]

GeneCards Summary for HOXB2 Gene

HOXB2 (Homeobox B2) is a Protein Coding gene. Diseases associated with HOXB2 include Bamforth-Lazarus Syndrome. Among its related pathways are Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 and Developmental Biology. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and sequence-specific DNA binding. An important paralog of this gene is HOXA2.

UniProtKB/Swiss-Prot for HOXB2 Gene

  • Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Gene Wiki entry for HOXB2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB2 Gene

Genomics for HOXB2 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HOXB2 Gene

Enhancers for HOXB2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G048538 2.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 39.8 -28.1 -28135 68.8 CREB3L1 AGO1 FEZF1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D ZNF610 HOXB2 SKAP1 HOXB9 HOXB3 ENSG00000264701 HOXB-AS1 HOXB-AS3 SUMO2P17 HOXB-AS4 HOXB1
GH17G048491 1.9 FANTOM5 Ensembl ENCODE dbSUPER 30.4 +52.3 52333 2.0 PKNOX1 CREB3L1 ARNT SIN3A FEZF1 ZNF2 ZNF766 ZNF143 ZNF207 ZNF548 HOXB2 SKAP1 HOXB4 MIR10A HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS2 SCRN2
GH17G048505 1.5 FANTOM5 ENCODE dbSUPER 33.6 +39.0 38988 1.8 HDAC1 PKNOX1 ZSCAN4 BMI1 RAD21 ZNF366 RCOR1 RELB FOS IKZF2 HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB-AS3 HOXB3 HOXB-AS2 LOC105371808
GH17G048481 1.5 Ensembl ENCODE dbSUPER 29.1 +60.4 60373 6.3 PKNOX1 ATF1 SIN3A TCF12 FOS ZNF263 REST TBX21 SREBF1 SMARCA4 HOXB2 SKAP1 HOXB-AS2 HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS4 HOXB9 CDK5RAP3
GH17G048496 1 ENCODE dbSUPER 30.8 +46.9 46877 2.8 ESRRA KLF1 INSM2 KLF17 HIC1 CTBP1 ZSCAN5C FOS ZNF600 RCOR1 HOXB2 SKAP1 HOXB-AS1 HOXB4 MIR10A HOXB3 HOXB1 HOXB-AS2 HOXB-AS3 MIR1203
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXB2 on UCSC Golden Path with GeneCards custom track

Promoters for HOXB2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095338 1731 3801 PKNOX1 AGO1 WRNIP1 SIN3A FEZF1 YY1 ZNF766 GLIS2 ZNF263 REST

Transcription factor binding sites by QIAGEN in the HOXB2 gene promoter:

Genomic Location for HOXB2 Gene

Chromosome:
17
Start:
48,540,894 bp from pter
End:
48,545,031 bp from pter
Size:
4,138 bases
Orientation:
Minus strand

Genomic View for HOXB2 Gene

Genes around HOXB2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HOXB2 Gene

Proteins for HOXB2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for HOXB2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P14652-HXB2_HUMAN
    Recommended name:
    Homeobox protein Hox-B2
    Protein Accession:
    P14652
    Secondary Accessions:
    • P10913
    • P17485

    Protein attributes for HOXB2 Gene

    Size:
    356 amino acids
    Molecular mass:
    37914 Da
    Quaternary structure:
    • Part of the nuclear protein complex gamma-globin promoter and enhancer binding factor (gamma-PE) composed at least by SATB1 and HOXB2.

neXtProt entry for HOXB2 Gene

Protein Expression for HOXB2 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for HOXB2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HOXB2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HOXB2 Gene

Domains & Families for HOXB2 Gene

Gene Families for HOXB2 Gene

HGNC:

Protein Domains for HOXB2 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for HOXB2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P14652

UniProtKB/Swiss-Prot:

HXB2_HUMAN :
  • Belongs to the Antp homeobox family. Proboscipedia subfamily.
Family:
  • Belongs to the Antp homeobox family. Proboscipedia subfamily.
genes like me logo Genes that share domains with HOXB2: view

Function for HOXB2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for HOXB2 Gene

GENATLAS Biochemistry:
homeo box B2(2H),homologous to mouse Hox-2.8,Drosophila pb
UniProtKB/Swiss-Prot Function:
Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.

Gene Ontology (GO) - Molecular Function for HOXB2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IEA --
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with HOXB2: view
genes like me logo Genes that share phenotypes with HOXB2: view

Animal Models for HOXB2 Gene

MGI Knock Outs for HOXB2:

Animal Model Products

CRISPR Products

miRNA for HOXB2 Gene

miRTarBase miRNAs that target HOXB2

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for HOXB2

Cell Line Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for HOXB2 Gene

Localization for HOXB2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HOXB2 Gene

Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HOXB2 gene
Compartment Confidence
nucleus 5
cytosol 5

Gene Ontology (GO) - Cellular Components for HOXB2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm TAS --
GO:0005829 cytosol IDA --
GO:0016607 nuclear speck IDA --
genes like me logo Genes that share ontologies with HOXB2: view

Pathways & Interactions for HOXB2 Gene

genes like me logo Genes that share pathways with HOXB2: view

Gene Ontology (GO) - Biological Process for HOXB2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002011 morphogenesis of an epithelial sheet IEA --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0007275 multicellular organism development TAS 7876223
GO:0008015 blood circulation TAS 7876223
genes like me logo Genes that share ontologies with HOXB2: view

No data available for SIGNOR curated interactions for HOXB2 Gene

Drugs & Compounds for HOXB2 Gene

Products:

  1. Drug

(3) Additional Compounds for HOXB2 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with HOXB2: view

Transcripts for HOXB2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HOXB2 Gene

(2) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(59) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXB2 Gene

Homeobox B2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for HOXB2

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB2 Gene

No ASD Table

Relevant External Links for HOXB2 Gene

GeneLoc Exon Structure for
HOXB2
ECgene alternative splicing isoforms for
HOXB2

Expression for HOXB2 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXB2 Gene

mRNA expression in normal human tissues for HOXB2 Gene
mRNA expression by BioGPS for HOXB2 GenemRNA expression by GTEx for HOXB2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for HOXB2 Gene



NURSA nuclear receptor signaling pathways regulating expression of HOXB2 Gene:

HOXB2

SOURCE GeneReport for Unigene cluster for HOXB2 Gene:

Hs.514289

Evidence on tissue expression from TISSUES for HOXB2 Gene

  • Nervous system(2.1)
genes like me logo Genes that share expression patterns with HOXB2: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB2 Gene

Orthologs for HOXB2 Gene

This gene was present in the common ancestor of animals.

Orthologs for HOXB2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia HOXB2 34 35
  • 99.34 (n)
dog
(Canis familiaris)
 Mammalia HOXB2 34 35
  • 88.11 (n)
cow
(Bos Taurus)
 Mammalia HOXB2 34 35
  • 88.01 (n)
mouse
(Mus musculus)
 Mammalia Hoxb2 34 16 35
  • 82.72 (n)
rat
(Rattus norvegicus)
 Mammalia Hoxb2 34
  • 82.44 (n)
oppossum
(Monodelphis domestica)
 Mammalia HOXB2 35
  • 75 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia HOXB2 35
  • 56 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves HOXB2 34 35
  • 68.91 (n)
lizard
(Anolis carolinensis)
 Reptilia HOXB2 35
  • 57 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia hoxb2 34
  • 64.55 (n)
zebrafish
(Danio rerio)
 Actinopterygii hoxb2a 34 35
  • 63.38 (n)
fruit fly
(Drosophila melanogaster)
 Insecta pb 35
  • 15 (a)
 OneToMany
sea squirt
(Ciona savignyi)
 Ascidiacea -- 35
  • 50 (a)
 OneToMany
Species where no ortholog for HOXB2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HOXB2 Gene

ENSEMBL:
Gene Tree for HOXB2 (if available)
TreeFam:
Gene Tree for HOXB2 (if available)

Paralogs for HOXB2 Gene

Paralogs for HOXB2 Gene

(2) SIMAP similar genes for HOXB2 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with HOXB2: view

Variants for HOXB2 Gene

Sequence variations from dbSNP and Humsavar for HOXB2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000535670 -- 48,545,897(+) GCTTG(-/T)TATCT intron-variant, upstream-variant-2KB
rs1000896268 -- 48,545,853(+) AAACA(A/G)GCAGA intron-variant, upstream-variant-2KB
rs1001596513 -- 48,546,663(+) AGGAG(A/G)AGAAG intron-variant, upstream-variant-2KB
rs1002799671 -- 48,542,469(+) GACTT(C/T)TGCCG downstream-variant-500B, upstream-variant-2KB
rs1002863760 -- 48,545,198(+) GAAAA(C/G)AGAGA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXB2 Gene

Variant ID Type Subtype PubMed ID
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897
nsv953922 CNV deletion 24416366

Variation tolerance for HOXB2 Gene

Residual Variation Intolerance Score: 68.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.65; 45.72% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HOXB2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HOXB2 Gene

Disorders for HOXB2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HOXB2 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
bamforth-lazarus syndrome
  • hypothyroidism, thyroidal or athyroidal, with spiky hair and cleft palate
- elite association - COSMIC cancer census association via MalaCards
Search HOXB2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for HOXB2

Genetic Association Database (GAD)
HOXB2
Human Genome Epidemiology (HuGE) Navigator
HOXB2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXB2
genes like me logo Genes that share disorders with HOXB2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HOXB2 Gene

Publications for HOXB2 Gene

  1. Genome-wide association study reveals multiple loci associated with primary tooth development during infancy. (PMID: 20195514) Pillas D. … Jarvelin M.R. (PLoS Genet. 2010) 3 22 46 64
  2. The gammaPE complex contains both SATB1 and HOXB2 and has positive and negative roles in human gamma-globin gene regulation. (PMID: 10595394) Case S.S. … Lloyd J.A. (DNA Cell Biol. 1999) 3 4 22 64
  3. Transcription factor GATA-1 regulates human HOXB2 gene expression in erythroid cells. (PMID: 7876223) Vieille-Grosjean I. … Huber P. (J. Biol. Chem. 1995) 3 4 22 64
  4. Evaluation of candidate stromal epithelial cross-talk genes identifies association between risk of serous ovarian cancer and TERT, a cancer susceptibility "hot-spot". (PMID: 20628624) Johnatty S.E. … . (PLoS Genet. 2010) 3 46 64
  5. HOXB2 as a novel prognostic indicator for stage I lung adenocarcinomas. (PMID: 17805056) Inamura K. … Ishikawa Y. (J Thorac Oncol 2007) 3 22 64

Products for HOXB2 Gene

  • Addgene plasmids for HOXB2

Sources for HOXB2 Gene

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