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Aliases for HOXB-AS4 Gene

Subcategory (RNA class) for HOXB-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS4 Gene

  • HOXB Cluster Antisense RNA 4 2 3 5
  • HOXB Cluster Antisense RNA 4 (Non-Protein Coding) 2

External Ids for HOXB-AS4 Gene

Previous GeneCards Identifiers for HOXB-AS4 Gene

  • GC17P046707

Summaries for HOXB-AS4 Gene

GeneCards Summary for HOXB-AS4 Gene

HOXB-AS4 (HOXB Cluster Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXB-AS4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS4 Gene

Genomics for HOXB-AS4 Gene

GeneHancer (GH) Regulatory Elements for HOXB-AS4 Gene

Promoters and enhancers for HOXB-AS4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I048538 Promoter/Enhancer 3 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.2 -55.5 -55509 68.8 FEZF1 IRF4 YY1 ZNF213 ZNF143 SP3 MEF2D ZNF610 GLIS1 NBN HOXB2 HOXB3 HOXB6 HOXB4 HOXB5 PIR47329 PIR34300 UBE2Z SP2 ENSG00000264701
GH17I048238 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.7 -386.5 -386513 7.2 HDGF PKNOX1 ARNT SIN3A FEZF1 IRF4 ZNF766 ZNF213 FOS KLF13 SNX11 CBX1 COPZ2 CDK5RAP3 ENSG00000230532 RNU6-1152P SKAP1 MIR1203 EGID-105371807 SP2-AS1
GH17I049011 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 8.8 +385.8 385828 5.9 FOXA2 ZFP64 SIN3A FEZF1 ZBTB7B ZNF48 ETS1 GLIS2 FOS SP3 ENSG00000251461 ENSG00000238804 PRAC1 PRAC2 HOXB-AS4 HOXB9 IGF2BP1 ATP5MC1 UBE2Z SNF8
GH17I048011 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9 -615.2 -615244 4.3 HDGF PKNOX1 CLOCK ARNT SIN3A ZNF2 ZBTB7B E2F8 ZNF207 ZNF143 SP2 MRPL45P2 SCRN2 PRR15L ENSG00000264701 UBE2Z EFCAB13 RPS2P47 COPZ2 CDK5RAP3
GH17I048293 Enhancer 1.4 UCNEbase Ensembl ENCODE 9.6 -333.8 -333778 2.8 BATF IRF4 ZBTB40 ZNF335 ZNF766 SCRT2 ATF7 IKZF2 RUNX3 ZNF362 EGID-105371807 SKAP1 MIR1203 HOXB-AS4 HOXB9 SNX11 CBX1 CDK5RAP3 PRR15L ENSG00000266222
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HOXB-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOXB-AS4 Gene

Genomic Locations for HOXB-AS4 Gene
chr17:48,628,675-48,634,932
(GRCh38/hg38)
Size:
6,258 bases
Orientation:
Plus strand
chr17:46,706,037-46,712,294
(GRCh37/hg19)

Genomic View for HOXB-AS4 Gene

Genes around HOXB-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HOXB-AS4 Gene

Proteins for HOXB-AS4 Gene

Post-translational modifications for HOXB-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS4 Gene

Domains & Families for HOXB-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS4 Gene

Function for HOXB-AS4 Gene

Phenotypes From GWAS Catalog for HOXB-AS4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS4 Gene

Localization for HOXB-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS4 Gene

Pathways & Interactions for HOXB-AS4 Gene

SuperPathways for HOXB-AS4 Gene

No Data Available

Interacting Proteins for HOXB-AS4 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS4 Gene

Drugs & Compounds for HOXB-AS4 Gene

No Compound Related Data Available

Transcripts for HOXB-AS4 Gene

mRNA/cDNA for HOXB-AS4 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS4 Gene

No ASD Table

Relevant External Links for HOXB-AS4 Gene

GeneLoc Exon Structure for
HOXB-AS4
ECgene alternative splicing isoforms for
HOXB-AS4

Expression for HOXB-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXB-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS4 Gene

This gene is overexpressed in Colon - Transverse (x35.7) and Small Intestine - Terminal Ileum (x8.2).
genes like me logo Genes that share expression patterns with HOXB-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS4 Gene

Orthologs for HOXB-AS4 Gene

Evolution for HOXB-AS4 Gene

ENSEMBL:
Gene Tree for HOXB-AS4 (if available)
TreeFam:
Gene Tree for HOXB-AS4 (if available)

No data available for Orthologs for HOXB-AS4 Gene

Paralogs for HOXB-AS4 Gene

No data available for Paralogs for HOXB-AS4 Gene

Variants for HOXB-AS4 Gene

Additional Variant Information for HOXB-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXB-AS4 Gene

Disorders for HOXB-AS4 Gene

No disorders were found for HOXB-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HOXB-AS4 Gene

Publications for HOXB-AS4 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for HOXB-AS4 Gene

Sources for HOXB-AS4 Gene

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