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Aliases for HOXB-AS4 Gene

Subcategory (RNA class) for HOXB-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS4 Gene

  • HOXB Cluster Antisense RNA 4 2 3 5
  • HOXB Cluster Antisense RNA 4 (Non-Protein Coding) 2

External Ids for HOXB-AS4 Gene

Previous GeneCards Identifiers for HOXB-AS4 Gene

  • GC17P046707

Summaries for HOXB-AS4 Gene

GeneCards Summary for HOXB-AS4 Gene

HOXB-AS4 (HOXB Cluster Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS4 Gene

Genomics for HOXB-AS4 Gene

Regulatory Elements for HOXB-AS4 Gene

Enhancers for HOXB-AS4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F048538 1.7 VISTA FANTOM5 Ensembl ENCODE 11.2 -55.5 -55510 68.8 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A FEZF1 ZNF2 YY1 ZNF143 HOXB2 SKAP1 RN7SL125P GIP LOC105371815 ENSG00000251461 ENSG00000264243 LINC02075 HOXB9 HOXB3
GH17F048128 0.4 FANTOM5 10.2 -499.9 -499932 0.2 KDM1A SNX11 RNU6-1201P CBX1 MIR1203 COPZ2 MIR152 NFE2L1 HOXB-AS4 HOXB9 TBX21
GH17F048131 0.7 ENCODE 10.2 -497.3 -497262 0.2 CTCF ESRRA ARID4B THRB RAD21 RFX5 ZFHX2 ZNF143 SMC3 EGR2 RNU6-1201P SNX11 CBX1 MIR1203 COPZ2 MIR152 NFE2L1 HOXB-AS4 HOXB9 PNPO
GH17F048127 0.6 Ensembl ENCODE 10.2 -501.1 -501075 0.4 PKNOX1 JUN SIN3A CTBP1 POLR2A RCOR1 FOSL2 FOS ZNF687 SMARCC1 SNX11 RNU6-1201P CBX1 ENSG00000253347 MIR1203 COPZ2 MIR152 NFE2L1 HOXB9 HOXB-AS4
GH17F048333 0.7 ENCODE 10.1 -295.4 -295442 0.0 PKNOX1 PBX2 HMBOX1 JUNB CREM SKAP1 EGID-105371807 MIR1203 HOXB-AS4 HOXB9 ENSG00000266222
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HOXB-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Location for HOXB-AS4 Gene

Chromosome:
17
Start:
48,628,675 bp from pter
End:
48,634,932 bp from pter
Size:
6,258 bases
Orientation:
Plus strand

Genomic View for HOXB-AS4 Gene

Genes around HOXB-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HOXB-AS4 Gene

Proteins for HOXB-AS4 Gene

Post-translational modifications for HOXB-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS4 Gene

Domains & Families for HOXB-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS4 Gene

Function for HOXB-AS4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS4 Gene

Localization for HOXB-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXB-AS4 Gene

Pathways & Interactions for HOXB-AS4 Gene

SuperPathways for HOXB-AS4 Gene

No Data Available

Interacting Proteins for HOXB-AS4 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS4 Gene

Transcripts for HOXB-AS4 Gene

mRNA/cDNA for HOXB-AS4 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS4 Gene

No ASD Table

Relevant External Links for HOXB-AS4 Gene

GeneLoc Exon Structure for
HOXB-AS4
ECgene alternative splicing isoforms for
HOXB-AS4

Expression for HOXB-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXB-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS4 Gene

This gene is overexpressed in Colon - Transverse (x35.7) and Small Intestine - Terminal Ileum (x8.2).
genes like me logo Genes that share expression patterns with HOXB-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXB-AS4 Gene

Orthologs for HOXB-AS4 Gene

Evolution for HOXB-AS4 Gene

ENSEMBL:
Gene Tree for HOXB-AS4 (if available)
TreeFam:
Gene Tree for HOXB-AS4 (if available)

No data available for Orthologs for HOXB-AS4 Gene

Paralogs for HOXB-AS4 Gene

No data available for Paralogs for HOXB-AS4 Gene

Variants for HOXB-AS4 Gene

Relevant External Links for HOXB-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXB-AS4 Gene

Disorders for HOXB-AS4 Gene

No disorders were found for HOXB-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HOXB-AS4 Gene

Publications for HOXB-AS4 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for HOXB-AS4 Gene

Sources for HOXB-AS4 Gene

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