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Aliases for HOXB-AS3 Gene

Subcategory (RNA class) for HOXB-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS3 Gene

  • HOXB Cluster Antisense RNA 3 2 3 5
  • HOXB Cluster Antisense RNA 3 (Non-Protein Coding) 2

External Ids for HOXB-AS3 Gene

Previous GeneCards Identifiers for HOXB-AS3 Gene

  • GC17P046667
  • GC17P046626

Summaries for HOXB-AS3 Gene

GeneCards Summary for HOXB-AS3 Gene

HOXB-AS3 (HOXB Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS3 Gene

Genomics for HOXB-AS3 Gene

Regulatory Elements for HOXB-AS3 Gene

Enhancers for HOXB-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F048538 2 VISTA FANTOM5 Ensembl ENCODE 12.2 +23.5 23536 68.8 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A FEZF1 ZNF2 YY1 ZNF143 HOXB2 SKAP1 RN7SL125P GIP LOC105371815 ENSG00000251461 ENSG00000264243 LINC02075 HOXB9 HOXB3
GH17F048491 1.6 FANTOM5 Ensembl ENCODE 11.2 -57.0 -56980 2.1 PKNOX1 CREB3L1 FEZF1 ZNF2 ZNF143 ZNF548 ZNF263 REST MEF2D ZNF610 HOXB2 SKAP1 RN7SL125P GIP LOC105371815 ENSG00000251461 ENSG00000264243 LINC02075 MIR10A HOXB4
GH17F048505 1.5 FANTOM5 Ensembl ENCODE 11.8 -43.6 -43587 1.8 HDAC1 PKNOX1 BMI1 RAD21 ZNF366 RCOR1 FOS USF2 CEBPB JUNB HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB3 HOXB-AS3 HOXB-AS2 LOC105371808
GH17F048521 1.2 Ensembl ENCODE 11.6 -26.9 -26883 2.3 CBX3 PKNOX1 TBL1XR1 NFRKB RAD21 ZNF366 SCRT2 ZBTB2 NCOA1 CEBPB HOXB2 HOXB-AS1 HOXB-AS3 HOXB-AS2 HOXB4 MIR10A HOXB3 LOC105371808 ENSG00000206805
GH17F048481 1.2 Ensembl ENCODE 11.2 -65.0 -64972 6.3 HDAC1 CBX3 ATF1 KLF17 SIN3A RAD21 ZNF366 SCRT2 FOS ZNF263 HOXB2 SKAP1 HOXB-AS2 HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS4 HOXB9 CDK5RAP3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXB-AS3 on UCSC Golden Path with GeneCards custom track

Promoters for HOXB-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001807824 -1330 601 PKNOX1 FEZF1 GLI4 ZNF2 ELK1 SP3 TSHZ1 REST CBX8 ZNF610

Genomic Location for HOXB-AS3 Gene

Chromosome:
17
Start:
48,549,630 bp from pter
End:
48,606,414 bp from pter
Size:
56,785 bases
Orientation:
Plus strand

Genomic View for HOXB-AS3 Gene

Genes around HOXB-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS3 Gene

Proteins for HOXB-AS3 Gene

Post-translational modifications for HOXB-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS3 Gene

Domains & Families for HOXB-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS3 Gene

Function for HOXB-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS3 Gene

Localization for HOXB-AS3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HOXB-AS3 gene
Compartment Confidence
nucleus 3
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for HOXB-AS3 Gene

Pathways & Interactions for HOXB-AS3 Gene

SuperPathways for HOXB-AS3 Gene

No Data Available

Interacting Proteins for HOXB-AS3 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS3 Gene

Transcripts for HOXB-AS3 Gene

mRNA/cDNA for HOXB-AS3 Gene

(6) Additional mRNA sequences :
(15) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXB-AS3 Gene

HOXB cluster antisense RNA 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS3 Gene

No ASD Table

Relevant External Links for HOXB-AS3 Gene

GeneLoc Exon Structure for
HOXB-AS3
ECgene alternative splicing isoforms for
HOXB-AS3

Expression for HOXB-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXB-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS3 Gene

This gene is overexpressed in Colon - Sigmoid (x11.0), Kidney - Cortex (x8.6), and Colon - Transverse (x6.0).

SOURCE GeneReport for Unigene cluster for HOXB-AS3 Gene:

Hs.660088
genes like me logo Genes that share expression patterns with HOXB-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXB-AS3 Gene

Orthologs for HOXB-AS3 Gene

Evolution for HOXB-AS3 Gene

ENSEMBL:
Gene Tree for HOXB-AS3 (if available)
TreeFam:
Gene Tree for HOXB-AS3 (if available)

No data available for Orthologs for HOXB-AS3 Gene

Paralogs for HOXB-AS3 Gene

No data available for Paralogs for HOXB-AS3 Gene

Variants for HOXB-AS3 Gene

Sequence variations from dbSNP and Humsavar for HOXB-AS3 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs756724993 Uncertain significance 48,596,652(+) CCGGC(C/T)GCTGG intron-variant, reference, missense
rs762346893 Uncertain significance 48,598,060(+) ATAGC(C/G/T)CGACG intron-variant, reference, missense
rs1060030 -- 48,606,300(+) TCCCC(A/C)CCCCC nc-transcript-variant, upstream-variant-2KB
rs1064739 -- 48,606,293(+) ATTCC(C/T)TTCCC nc-transcript-variant, upstream-variant-2KB
rs10853101 -- 48,599,098(+) GAAAG(A/G)GACTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HOXB-AS3 Gene

Variant ID Type Subtype PubMed ID
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897

Relevant External Links for HOXB-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXB-AS3 Gene

Disorders for HOXB-AS3 Gene

Relevant External Links for HOXB-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXB-AS3

No disorders were found for HOXB-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS3 Gene

Publications for HOXB-AS3 Gene

  1. A genome-wide association meta-analysis identifies new childhood obesity loci. (PMID: 22484627) Bradfield J.P. … Grant S.F. (Nat. Genet. 2012) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64
  4. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for HOXB-AS3 Gene

Sources for HOXB-AS3 Gene

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