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Aliases for HOXB-AS3 Gene

Subcategory (RNA class) for HOXB-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS3 Gene

  • HOXB Cluster Antisense RNA 3 2 3 5
  • HOXB Cluster Antisense RNA 3 (Non-Protein Coding) 2

External Ids for HOXB-AS3 Gene

Previous GeneCards Identifiers for HOXB-AS3 Gene

  • GC17P046667
  • GC17P046626

Summaries for HOXB-AS3 Gene

GeneCards Summary for HOXB-AS3 Gene

HOXB-AS3 (HOXB Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXB-AS3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS3 Gene

Genomics for HOXB-AS3 Gene

GeneHancer (GH) Regulatory Elements for HOXB-AS3 Gene

Promoters and enhancers for HOXB-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I048538 Promoter/Enhancer 3 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.2 +23.5 23536 68.8 FEZF1 IRF4 YY1 ZNF213 ZNF143 SP3 MEF2D ZNF610 GLIS1 NBN HOXB2 HOXB3 HOXB6 HOXB4 HOXB5 PIR47329 PIR34300 UBE2Z SP2 ENSG00000264701
GH17I048491 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -56.9 -56931 2 PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 ZNF213 E2F8 ZNF207 ZNF143 HOXB2 SKAP1 SP2 HOXB4 MIR10A HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS2
GH17I048505 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 11.8 -43.6 -43587 1.8 HDAC1 PKNOX1 ZSCAN4 NEUROD1 BMI1 BATF IRF4 RFX5 ZNF335 ZNF366 HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB3 HOXB-AS3 HOXB-AS2 LOC105371808
GH17I048481 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.2 -65.0 -64972 6.3 ATF1 PKNOX1 TCF12 FOS ATF7 RUNX3 REST SREBF1 SMARCA4 ZSCAN16 HOXB2 SKAP1 HOXB-AS2 HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS4 HOXB9 CDK5RAP3
GH17I048477 Enhancer 1.2 ENCODE dbSUPER 10.9 -71.2 -71165 1.4 HDGF PKNOX1 ATF1 ARNT FEZF1 NCOA2 TCF12 ZNF766 GATA2 ZNF207 ENSG00000206805 GC17P048482 SKAP1 HOXB2 HOXB-AS1 HOXB-AS3 HOXB1 SP2 SNX11 ENSG00000266601
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HOXB-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOXB-AS3 Gene

Genomic Locations for HOXB-AS3 Gene
chr17:48,549,630-48,606,414
(GRCh38/hg38)
Size:
56,785 bases
Orientation:
Plus strand
chr17:46,626,992-46,683,776
(GRCh37/hg19)

Genomic View for HOXB-AS3 Gene

Genes around HOXB-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS3 Gene

Proteins for HOXB-AS3 Gene

Post-translational modifications for HOXB-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS3 Gene

Domains & Families for HOXB-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS3 Gene

Function for HOXB-AS3 Gene

Phenotypes From GWAS Catalog for HOXB-AS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS3 Gene

Localization for HOXB-AS3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HOXB-AS3 gene
Compartment Confidence
nucleus 3
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS3 Gene

Pathways & Interactions for HOXB-AS3 Gene

SuperPathways for HOXB-AS3 Gene

No Data Available

Interacting Proteins for HOXB-AS3 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS3 Gene

Drugs & Compounds for HOXB-AS3 Gene

No Compound Related Data Available

Transcripts for HOXB-AS3 Gene

mRNA/cDNA for HOXB-AS3 Gene

(6) Additional mRNA sequences :
(15) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXB-AS3 Gene

HOXB cluster antisense RNA 3:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS3 Gene

No ASD Table

Relevant External Links for HOXB-AS3 Gene

GeneLoc Exon Structure for
HOXB-AS3
ECgene alternative splicing isoforms for
HOXB-AS3

Expression for HOXB-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXB-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS3 Gene

This gene is overexpressed in Colon - Sigmoid (x11.0), Kidney - Cortex (x8.6), and Colon - Transverse (x6.0).

SOURCE GeneReport for Unigene cluster for HOXB-AS3 Gene:

Hs.660088
genes like me logo Genes that share expression patterns with HOXB-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS3 Gene

Orthologs for HOXB-AS3 Gene

Evolution for HOXB-AS3 Gene

ENSEMBL:
Gene Tree for HOXB-AS3 (if available)
TreeFam:
Gene Tree for HOXB-AS3 (if available)

No data available for Orthologs for HOXB-AS3 Gene

Paralogs for HOXB-AS3 Gene

No data available for Paralogs for HOXB-AS3 Gene

Variants for HOXB-AS3 Gene

Sequence variations from dbSNP and Humsavar for HOXB-AS3 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs756724993 uncertain-significance, not specified 48,596,652(+) C/T intron_variant
rs762346893 uncertain-significance, not specified 48,598,060(+) C/G/T intron_variant
rs1000181428 -- 48,596,132(+) G/T intron_variant
rs1000324884 -- 48,605,943(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000350690 -- 48,592,590(+) C/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HOXB-AS3 Gene

Variant ID Type Subtype PubMed ID
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897

Additional Variant Information for HOXB-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXB-AS3 Gene

Disorders for HOXB-AS3 Gene

Additional Disease Information for HOXB-AS3

No disorders were found for HOXB-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS3 Gene

Publications for HOXB-AS3 Gene

  1. A Peptide Encoded by a Putative lncRNA HOXB-AS3 Suppresses Colon Cancer Growth. (PMID: 28985503) Huang JZ … Yan GR (Molecular cell 2017) 3 58
  2. A genome-wide association meta-analysis identifies new childhood obesity loci. (PMID: 22484627) Bradfield JP … Early Growth Genetics Consortium (Nature genetics 2012) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58
  5. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for HOXB-AS3 Gene

Sources for HOXB-AS3 Gene

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