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HOXB-AS3 Gene(RNA Gene)

HOXB Cluster Antisense RNA 3

GCID:
GC17P048549
GIFtS:
23
Genes Participants
UDN Logo

Aliases for HOXB-AS3 Gene

Subcategory (RNA class) for HOXB-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS3 Gene

  • HOXB Cluster Antisense RNA 3 2 3 5
  • HOXB Cluster Antisense RNA 3 (Non-Protein Coding) 2

External Ids for HOXB-AS3 Gene

Previous GeneCards Identifiers for HOXB-AS3 Gene

  • GC17P046667
  • GC17P046626

Summaries for HOXB-AS3 Gene

GeneCards Summary for HOXB-AS3 Gene

HOXB-AS3 (HOXB Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS3 Gene

Genomics for HOXB-AS3 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HOXB-AS3 Gene

Enhancers for HOXB-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G048538 2.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 12.2 +23.5 23536 68.8 CREB3L1 AGO1 FEZF1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D ZNF610 HOXB2 SKAP1 HOXB9 HOXB3 ENSG00000264701 HOXB-AS1 HOXB-AS3 SUMO2P17 HOXB-AS4 HOXB1
GH17G048491 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -56.9 -56932 2.0 PKNOX1 CREB3L1 ARNT SIN3A FEZF1 ZNF2 ZNF766 ZNF143 ZNF207 ZNF548 HOXB2 SKAP1 HOXB4 MIR10A HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS2 SCRN2
GH17G048505 1.5 FANTOM5 ENCODE dbSUPER 11.8 -43.6 -43587 1.8 HDAC1 PKNOX1 ZSCAN4 BMI1 RAD21 ZNF366 RCOR1 RELB FOS IKZF2 HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB-AS3 HOXB3 HOXB-AS2 LOC105371808
GH17G048481 1.5 Ensembl ENCODE dbSUPER 11.2 -65.0 -64972 6.3 PKNOX1 ATF1 SIN3A TCF12 FOS ZNF263 REST TBX21 SREBF1 SMARCA4 HOXB2 SKAP1 HOXB-AS2 HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS4 HOXB9 CDK5RAP3
GH17G048477 1.3 ENCODE dbSUPER 10.9 -71.2 -71165 1.4 HDGF PKNOX1 ATF1 ARNT FEZF1 TCF12 ZNF766 ELK1 GATA2 ZNF207 SKAP1 HOXB2 HOXB-AS1 HOXB-AS3 HOXB1 SNX11 ENSG00000266601 GC17P048482 LOC101927166
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXB-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Location for HOXB-AS3 Gene

Chromosome:
17
Start:
48,549,630 bp from pter
End:
48,606,414 bp from pter
Size:
56,785 bases
Orientation:
Plus strand

Genomic View for HOXB-AS3 Gene

Genes around HOXB-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HOXB-AS3 Gene

Proteins for HOXB-AS3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HOXB-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS3 Gene

Domains & Families for HOXB-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS3 Gene

Function for HOXB-AS3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS3 Gene

Localization for HOXB-AS3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HOXB-AS3 gene
Compartment Confidence
nucleus 3
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for HOXB-AS3 Gene

Pathways & Interactions for HOXB-AS3 Gene

SuperPathways for HOXB-AS3 Gene

PathCards logo More details on SuperPathways for HOXB-AS3
No Data Available

Interacting Proteins for HOXB-AS3 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS3 Gene

Drugs & Compounds for HOXB-AS3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HOXB-AS3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HOXB-AS3 Gene

(6) Additional mRNA sequences :
(15) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXB-AS3 Gene

HOXB cluster antisense RNA 3:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS3 Gene

No ASD Table

Relevant External Links for HOXB-AS3 Gene

GeneLoc Exon Structure for
HOXB-AS3
ECgene alternative splicing isoforms for
HOXB-AS3

Expression for HOXB-AS3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXB-AS3 Gene

mRNA expression in normal human tissues for HOXB-AS3 Gene
mRNA expression by GTEx for HOXB-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS3 Gene

This gene is overexpressed in Colon - Sigmoid (x11.0), Kidney - Cortex (x8.6), and Colon - Transverse (x6.0).

SOURCE GeneReport for Unigene cluster for HOXB-AS3 Gene:

Hs.660088
genes like me logo Genes that share expression patterns with HOXB-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS3 Gene

Orthologs for HOXB-AS3 Gene

Evolution for HOXB-AS3 Gene

ENSEMBL:
Gene Tree for HOXB-AS3 (if available)
TreeFam:
Gene Tree for HOXB-AS3 (if available)

No data available for Orthologs for HOXB-AS3 Gene

Paralogs for HOXB-AS3 Gene

No data available for Paralogs for HOXB-AS3 Gene

Variants for HOXB-AS3 Gene

Sequence variations from dbSNP and Humsavar for HOXB-AS3 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs756724993 Uncertain significance 48,596,652(+) CCGGC(C/T)GCTGG intron-variant, reference, missense
rs762346893 Uncertain significance 48,598,060(+) ATAGC(C/G/T)CGACG intron-variant, reference, missense
rs1000181428 -- 48,596,132(+) AGTCC(G/T)CTCCT intron-variant, utr-variant-3-prime
rs1000324884 -- 48,605,943(+) CCGCA(C/T)AGACA intron-variant, upstream-variant-2KB
rs1000350690 -- 48,592,590(+) CTACT(C/G)CAGAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HOXB-AS3 Gene

Variant ID Type Subtype PubMed ID
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897

Relevant External Links for HOXB-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXB-AS3 Gene

Disorders for HOXB-AS3 Gene

Relevant External Links for HOXB-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXB-AS3

No disorders were found for HOXB-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS3 Gene

Publications for HOXB-AS3 Gene

  1. A genome-wide association meta-analysis identifies new childhood obesity loci. (PMID: 22484627) Bradfield J.P. … Grant S.F. (Nat. Genet. 2012) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64
  4. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for HOXB-AS3 Gene

Sources for HOXB-AS3 Gene

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