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Aliases for HOXB-AS2 Gene

Subcategory (RNA class) for HOXB-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS2 Gene

  • HOXB Cluster Antisense RNA 2 2 3 5
  • HOXB Cluster Antisense RNA 2 (Non-Protein Coding) 2

External Ids for HOXB-AS2 Gene

Previous GeneCards Identifiers for HOXB-AS2 Gene

  • GC17P046635
  • GC17P046636

Summaries for HOXB-AS2 Gene

GeneCards Summary for HOXB-AS2 Gene

HOXB-AS2 (HOXB Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS2 Gene

Genomics for HOXB-AS2 Gene

Regulatory Elements for HOXB-AS2 Gene

Enhancers for HOXB-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F048538 2 VISTA FANTOM5 Ensembl ENCODE 10.8 +15.9 15904 68.8 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A FEZF1 ZNF2 YY1 ZNF143 HOXB2 SKAP1 RN7SL125P GIP LOC105371815 ENSG00000251461 ENSG00000264243 LINC02075 HOXB9 HOXB3
GH17F048491 1.6 FANTOM5 Ensembl ENCODE 11.2 -64.6 -64612 2.1 PKNOX1 CREB3L1 FEZF1 ZNF2 ZNF143 ZNF548 ZNF263 REST MEF2D ZNF610 HOXB2 SKAP1 RN7SL125P GIP LOC105371815 ENSG00000251461 ENSG00000264243 LINC02075 MIR10A HOXB4
GH17F048505 1.5 FANTOM5 Ensembl ENCODE 11 -51.2 -51219 1.8 HDAC1 PKNOX1 BMI1 RAD21 ZNF366 RCOR1 FOS USF2 CEBPB JUNB HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB3 HOXB-AS3 HOXB-AS2 LOC105371808
GH17F048481 1.2 Ensembl ENCODE 11.8 -72.6 -72604 6.3 HDAC1 CBX3 ATF1 KLF17 SIN3A RAD21 ZNF366 SCRT2 FOS ZNF263 HOXB2 SKAP1 HOXB-AS2 HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS4 HOXB9 CDK5RAP3
GH17F048521 1.2 Ensembl ENCODE 10.7 -34.5 -34515 2.3 CBX3 PKNOX1 TBL1XR1 NFRKB RAD21 ZNF366 SCRT2 ZBTB2 NCOA1 CEBPB HOXB2 HOXB-AS1 HOXB-AS3 HOXB-AS2 HOXB4 MIR10A HOXB3 LOC105371808 ENSG00000206805
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXB-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for HOXB-AS2 Gene

Chromosome:
17
Start:
48,557,262 bp from pter
End:
48,560,333 bp from pter
Size:
3,072 bases
Orientation:
Plus strand

Genomic View for HOXB-AS2 Gene

Genes around HOXB-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HOXB-AS2 Gene

Proteins for HOXB-AS2 Gene

Post-translational modifications for HOXB-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS2 Gene

Domains & Families for HOXB-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS2 Gene

Function for HOXB-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS2 Gene

Localization for HOXB-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXB-AS2 Gene

Pathways & Interactions for HOXB-AS2 Gene

SuperPathways for HOXB-AS2 Gene

No Data Available

Interacting Proteins for HOXB-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS2 Gene

Transcripts for HOXB-AS2 Gene

mRNA/cDNA for HOXB-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS2 Gene

No ASD Table

Relevant External Links for HOXB-AS2 Gene

GeneLoc Exon Structure for
HOXB-AS2
ECgene alternative splicing isoforms for
HOXB-AS2

Expression for HOXB-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXB-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS2 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x5.1), Colon - Sigmoid (x4.9), and Esophagus - Muscularis (x4.3).
genes like me logo Genes that share expression patterns with HOXB-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXB-AS2 Gene

Orthologs for HOXB-AS2 Gene

Evolution for HOXB-AS2 Gene

ENSEMBL:
Gene Tree for HOXB-AS2 (if available)
TreeFam:
Gene Tree for HOXB-AS2 (if available)

No data available for Orthologs for HOXB-AS2 Gene

Paralogs for HOXB-AS2 Gene

No data available for Paralogs for HOXB-AS2 Gene

Variants for HOXB-AS2 Gene

Relevant External Links for HOXB-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXB-AS2 Gene

Disorders for HOXB-AS2 Gene

No disorders were found for HOXB-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HOXB-AS2 Gene

Publications for HOXB-AS2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for HOXB-AS2 Gene

Sources for HOXB-AS2 Gene

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