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Aliases for HOXB-AS2 Gene

Subcategory (RNA class) for HOXB-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS2 Gene

  • HOXB Cluster Antisense RNA 2 2 3 5
  • HOXB Cluster Antisense RNA 2 (Non-Protein Coding) 2

External Ids for HOXB-AS2 Gene

Previous GeneCards Identifiers for HOXB-AS2 Gene

  • GC17P046635
  • GC17P046636

Summaries for HOXB-AS2 Gene

GeneCards Summary for HOXB-AS2 Gene

HOXB-AS2 (HOXB Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXB-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS2 Gene

Genomics for HOXB-AS2 Gene

GeneHancer (GH) Regulatory Elements for HOXB-AS2 Gene

Promoters and enhancers for HOXB-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I048538 Promoter/Enhancer 3 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.9 +15.9 15904 68.8 FEZF1 IRF4 YY1 ZNF213 ZNF143 SP3 MEF2D ZNF610 GLIS1 NBN HOXB2 HOXB3 HOXB6 HOXB4 HOXB5 PIR47329 PIR34300 UBE2Z SP2 ENSG00000264701
GH17I048491 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -64.6 -64563 2 PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 ZNF213 E2F8 ZNF207 ZNF143 HOXB2 SKAP1 SP2 HOXB4 MIR10A HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS2
GH17I048505 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 11 -51.2 -51219 1.8 HDAC1 PKNOX1 ZSCAN4 NEUROD1 BMI1 BATF IRF4 RFX5 ZNF335 ZNF366 HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB3 HOXB-AS3 HOXB-AS2 LOC105371808
GH17I048481 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.8 -72.6 -72604 6.3 ATF1 PKNOX1 TCF12 FOS ATF7 RUNX3 REST SREBF1 SMARCA4 ZSCAN16 HOXB2 SKAP1 HOXB-AS2 HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS4 HOXB9 CDK5RAP3
GH17I048471 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.2 -84.6 -84580 1.7 HDGF KLF17 FEZF1 SCRT2 FOS IKZF2 ZBTB11 SP1 IKZF1 ZNF341 SKAP1 HOXB-AS2 HOXB3 HOXB4 MIR10A HOXB-AS1 HOXB2 HOXB1 MIR196A1 CDK5RAP3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HOXB-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOXB-AS2 Gene

Genomic Locations for HOXB-AS2 Gene
chr17:48,557,262-48,560,333
(GRCh38/hg38)
Size:
3,072 bases
Orientation:
Plus strand
chr17:46,634,624-46,637,695
(GRCh37/hg19)

Genomic View for HOXB-AS2 Gene

Genes around HOXB-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HOXB-AS2 Gene

Proteins for HOXB-AS2 Gene

Post-translational modifications for HOXB-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS2 Gene

Domains & Families for HOXB-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS2 Gene

Function for HOXB-AS2 Gene

Phenotypes From GWAS Catalog for HOXB-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS2 Gene

Localization for HOXB-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS2 Gene

Pathways & Interactions for HOXB-AS2 Gene

SuperPathways for HOXB-AS2 Gene

No Data Available

Interacting Proteins for HOXB-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS2 Gene

Drugs & Compounds for HOXB-AS2 Gene

No Compound Related Data Available

Transcripts for HOXB-AS2 Gene

mRNA/cDNA for HOXB-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS2 Gene

No ASD Table

Relevant External Links for HOXB-AS2 Gene

GeneLoc Exon Structure for
HOXB-AS2
ECgene alternative splicing isoforms for
HOXB-AS2

Expression for HOXB-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXB-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS2 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x5.1), Colon - Sigmoid (x4.9), and Esophagus - Muscularis (x4.3).
genes like me logo Genes that share expression patterns with HOXB-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS2 Gene

Orthologs for HOXB-AS2 Gene

Evolution for HOXB-AS2 Gene

ENSEMBL:
Gene Tree for HOXB-AS2 (if available)
TreeFam:
Gene Tree for HOXB-AS2 (if available)

No data available for Orthologs for HOXB-AS2 Gene

Paralogs for HOXB-AS2 Gene

No data available for Paralogs for HOXB-AS2 Gene

Variants for HOXB-AS2 Gene

Additional Variant Information for HOXB-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXB-AS2 Gene

Disorders for HOXB-AS2 Gene

No disorders were found for HOXB-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HOXB-AS2 Gene

Publications for HOXB-AS2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for HOXB-AS2 Gene

Sources for HOXB-AS2 Gene

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