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Aliases for HOXB-AS2 Gene

Subcategory (RNA class) for HOXB-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS2 Gene

  • HOXB Cluster Antisense RNA 2 2 3 5
  • HOXB Cluster Antisense RNA 2 (Non-Protein Coding) 2

External Ids for HOXB-AS2 Gene

Previous GeneCards Identifiers for HOXB-AS2 Gene

  • GC17P046635
  • GC17P046636

Summaries for HOXB-AS2 Gene

GeneCards Summary for HOXB-AS2 Gene

HOXB-AS2 (HOXB Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXB-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS2 Gene

Genomics for HOXB-AS2 Gene

Regulatory Elements for HOXB-AS2 Gene

Enhancers for HOXB-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H048538 2.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 10.9 +15.9 15904 68 FEZF1 YY1 ZNF143 SP3 MEF2D ZNF610 GLIS1 NBN NR2C1 KDM1A UBE2Z ENSG00000264701 HOXB2 CDK5RAP3 SP2 SKAP1 HOXB9 RN7SL125P GIP ENSG00000250838
GH17H048491 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -64.6 -64564 2 PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 ZNF143 ZNF207 ZNF548 REST HOXB2 SKAP1 RN7SL125P GIP ENSG00000250838 ENSG00000251461 ENSG00000264243 LINC02075 SP2 MIR10A
GH17H048481 1.5 Ensembl ENCODE dbSUPER 11.8 -72.6 -72604 6 PKNOX1 ATF1 TCF12 FOS ATF7 RUNX3 REST SREBF1 SMARCA4 ZSCAN16 HOXB2 SKAP1 HOXB-AS2 HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS4 HOXB9 CDK5RAP3
GH17H048505 1.5 FANTOM5 ENCODE dbSUPER 11 -51.2 -51219 1 HDAC1 PKNOX1 ZSCAN4 SIN3A BMI1 BATF RFX5 ZNF366 RCOR1 ATF7 HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB3 HOXB-AS3 HOXB-AS2 LOC105371808
GH17H048471 1.3 Ensembl ENCODE dbSUPER 11.1 -84.6 -84581 1 HDGF KLF17 FEZF1 SCRT2 FOS IKZF2 ZNF341 IKZF1 NR2C1 WT1 SKAP1 HOXB-AS2 HOXB3 HOXB4 MIR10A HOXB2 HOXB-AS1 HOXB1 MIR196A1 CDK5RAP3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXB-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for HOXB-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095342 -1762 601 PKNOX1 ARNT FEZF1 TCF12 ZNF766 NCOA1 TSHZ1 MEF2D SMARCA4 PBX2

Genomic Location for HOXB-AS2 Gene

Chromosome:
17
Start:
48,557,262 bp from pter
End:
48,560,333 bp from pter
Size:
3,072 bases
Orientation:
Plus strand

Genomic View for HOXB-AS2 Gene

Genes around HOXB-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HOXB-AS2 Gene

Proteins for HOXB-AS2 Gene

Post-translational modifications for HOXB-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS2 Gene

Domains & Families for HOXB-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS2 Gene

Function for HOXB-AS2 Gene

Phenotypes From GWAS Catalog for HOXB-AS2 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HOXB-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS2 Gene

Localization for HOXB-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS2 Gene

Pathways & Interactions for HOXB-AS2 Gene

SuperPathways for HOXB-AS2 Gene

No Data Available

Interacting Proteins for HOXB-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS2 Gene

Drugs & Compounds for HOXB-AS2 Gene

No Compound Related Data Available

Transcripts for HOXB-AS2 Gene

mRNA/cDNA for HOXB-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HOXB-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS2 Gene

No ASD Table

Relevant External Links for HOXB-AS2 Gene

GeneLoc Exon Structure for
HOXB-AS2
ECgene alternative splicing isoforms for
HOXB-AS2

Expression for HOXB-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXB-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HOXB-AS2 Gene

This gene is overexpressed in Esophagus - Gastroesophageal Junction (x5.1), Colon - Sigmoid (x4.9), and Esophagus - Muscularis (x4.3).
genes like me logo Genes that share expression patterns with HOXB-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS2 Gene

Orthologs for HOXB-AS2 Gene

Evolution for HOXB-AS2 Gene

ENSEMBL:
Gene Tree for HOXB-AS2 (if available)
TreeFam:
Gene Tree for HOXB-AS2 (if available)

No data available for Orthologs for HOXB-AS2 Gene

Paralogs for HOXB-AS2 Gene

No data available for Paralogs for HOXB-AS2 Gene

Variants for HOXB-AS2 Gene

Relevant External Links for HOXB-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXB-AS2 Gene

Disorders for HOXB-AS2 Gene

No disorders were found for HOXB-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HOXB-AS2 Gene

Publications for HOXB-AS2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 60

Products for HOXB-AS2 Gene

Sources for HOXB-AS2 Gene

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