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Aliases for HOXB-AS1 Gene

Subcategory (RNA class) for HOXB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS1 Gene

  • HOXB Cluster Antisense RNA 1 2 3 5
  • HOXB Cluster Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HOXB-AS1 Gene

Previous GeneCards Identifiers for HOXB-AS1 Gene

  • GC17P046622

Summaries for HOXB-AS1 Gene

GeneCards Summary for HOXB-AS1 Gene

HOXB-AS1 (HOXB Cluster Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS1 Gene

Genomics for HOXB-AS1 Gene

Regulatory Elements for HOXB-AS1 Gene

Enhancers for HOXB-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F048510 1.2 Ensembl ENCODE 12.5 -32.3 -32326 1.0 HDGF PKNOX1 ZNF146 ZMYM3 BMI1 CEBPG ZBTB40 CREM MTA2 HLF HOXB2 SKAP1 HOXB-AS1 HOXB-AS3 HOXB4 MIR10A HOXB3 HOXB-AS2 LOC105371808 ENSG00000206805
GH17F048512 1.4 Ensembl ENCODE 12.5 -30.2 -30224 0.8 IRF2 ZBTB2 ZEB2 ARID1B POLR2A SMARCA4 NFYB IKZF1 NBN IRF1 SKAP1 HOXB-AS1 HOXB2 HOXB-AS3 HOXB4 MIR10A HOXB3 HOXB-AS2 LOC105371808 ENSG00000206805
GH17F048538 1.7 VISTA FANTOM5 Ensembl ENCODE 12.3 +29.6 29615 68.8 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A FEZF1 ZNF2 YY1 ZNF143 HOXB2 SKAP1 RN7SL125P GIP LOC105371815 ENSG00000251461 ENSG00000264243 LINC02075 HOXB9 HOXB3
GH17F048505 1.1 FANTOM5 Ensembl ENCODE 12.3 -37.5 -37508 1.8 HDAC1 PKNOX1 BMI1 RAD21 ZNF366 RCOR1 FOS USF2 CEBPB JUNB HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB3 HOXB-AS3 HOXB-AS2 LOC105371808
GH17F048503 0.6 ENCODE 12.3 -39.7 -39697 1.6 ZNF263 ZMYM3 ZBTB8A ZIC2 OSR2 ZFHX2 GATA3 GLIS1 ZNF341 TRIM28 HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB3 HOXB-AS3 HOXB-AS2 MIR1203
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HOXB-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HOXB-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001348195 -351 4001 HDGF PKNOX1 WRNIP1 SIN3A FEZF1 YY1 GLIS2 ZNF263 SP3 REST

Genomic Location for HOXB-AS1 Gene

Chromosome:
17
Start:
48,543,551 bp from pter
End:
48,551,250 bp from pter
Size:
7,700 bases
Orientation:
Plus strand

Genomic View for HOXB-AS1 Gene

Genes around HOXB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS1 Gene

Proteins for HOXB-AS1 Gene

Post-translational modifications for HOXB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS1 Gene

Domains & Families for HOXB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS1 Gene

Function for HOXB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS1 Gene

Localization for HOXB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXB-AS1 Gene

Pathways & Interactions for HOXB-AS1 Gene

SuperPathways for HOXB-AS1 Gene

No Data Available

Interacting Proteins for HOXB-AS1 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS1 Gene

Transcripts for HOXB-AS1 Gene

mRNA/cDNA for HOXB-AS1 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXB-AS1 Gene

HOXB cluster antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS1 Gene

No ASD Table

Relevant External Links for HOXB-AS1 Gene

GeneLoc Exon Structure for
HOXB-AS1
ECgene alternative splicing isoforms for
HOXB-AS1

Expression for HOXB-AS1 Gene

mRNA expression in normal human tissues for HOXB-AS1 Gene

SOURCE GeneReport for Unigene cluster for HOXB-AS1 Gene:

Hs.171806
genes like me logo Genes that share expression patterns with HOXB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXB-AS1 Gene

Orthologs for HOXB-AS1 Gene

Evolution for HOXB-AS1 Gene

ENSEMBL:
Gene Tree for HOXB-AS1 (if available)
TreeFam:
Gene Tree for HOXB-AS1 (if available)

No data available for Orthologs for HOXB-AS1 Gene

Paralogs for HOXB-AS1 Gene

No data available for Paralogs for HOXB-AS1 Gene

Variants for HOXB-AS1 Gene

Sequence variations from dbSNP and Humsavar for HOXB-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1042815 -- 48,542,926(-) CCACT(C/T)CCTTT upstream-variant-2KB, utr-variant-3-prime
rs1042818 -- 48,542,749(-) TGTAG(A/G)TTATT upstream-variant-2KB, utr-variant-3-prime
rs1042822 -- 48,542,733(-) AAATT(A/C)TTTAA upstream-variant-2KB, utr-variant-3-prime
rs1057111 -- 48,549,344(-) TGTGA(G/T)AGATG intron-variant, utr-variant-3-prime
rs111401880 -- 48,545,011(+) TGGAG(C/G)GATTT intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for HOXB-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1478n106 CNV deletion 24896259
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897
nsv953922 CNV deletion 24416366

Relevant External Links for HOXB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXB-AS1 Gene

Disorders for HOXB-AS1 Gene

Relevant External Links for HOXB-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXB-AS1

No disorders were found for HOXB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS1 Gene

Publications for HOXB-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for HOXB-AS1 Gene

Sources for HOXB-AS1 Gene

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