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Aliases for HOXB-AS1 Gene

Subcategory (RNA class) for HOXB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOXB-AS1 Gene

  • HOXB Cluster Antisense RNA 1 2 3 5
  • HOXB Cluster Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HOXB-AS1 Gene

Previous GeneCards Identifiers for HOXB-AS1 Gene

  • GC17P046622

Summaries for HOXB-AS1 Gene

GeneCards Summary for HOXB-AS1 Gene

HOXB-AS1 (HOXB Cluster Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS1 Gene

Genomics for HOXB-AS1 Gene

Regulatory Elements for HOXB-AS1 Gene

Enhancers for HOXB-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HOXB-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HOXB-AS1 Gene

48,543,551 bp from pter
48,551,250 bp from pter
7,700 bases
Plus strand

Genomic View for HOXB-AS1 Gene

Genes around HOXB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS1 Gene

Proteins for HOXB-AS1 Gene

Post-translational modifications for HOXB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS1 Gene

Domains & Families for HOXB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS1 Gene

Function for HOXB-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS1 Gene

Localization for HOXB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXB-AS1 Gene

Pathways & Interactions for HOXB-AS1 Gene

SuperPathways for HOXB-AS1 Gene

No Data Available

Interacting Proteins for HOXB-AS1 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS1 Gene

Drugs & Compounds for HOXB-AS1 Gene

No Compound Related Data Available

Transcripts for HOXB-AS1 Gene

mRNA/cDNA for HOXB-AS1 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXB-AS1 Gene

HOXB cluster antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS1 Gene

No ASD Table

Relevant External Links for HOXB-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXB-AS1 Gene

mRNA expression in normal human tissues for HOXB-AS1 Gene

SOURCE GeneReport for Unigene cluster for HOXB-AS1 Gene Hs.171806

genes like me logo Genes that share expression patterns with HOXB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HOXB-AS1 Gene

Orthologs for HOXB-AS1 Gene

Evolution for HOXB-AS1 Gene

Gene Tree for HOXB-AS1 (if available)
Gene Tree for HOXB-AS1 (if available)

No data available for Orthologs for HOXB-AS1 Gene

Paralogs for HOXB-AS1 Gene

No data available for Paralogs for HOXB-AS1 Gene

Variants for HOXB-AS1 Gene

Sequence variations from dbSNP and Humsavar for HOXB-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs999493 -- 48,548,157(-) GGTCC(C/T)CAGGC intron-variant
rs5820712 -- 48,547,231(+) GCCCA(-/G)AGAAC intron-variant
rs5820713 -- 48,548,327(+) TTTTG(-/T)TTTTT intron-variant
rs5820714 -- 48,548,341(+) TTTTT(-/TT)AGATT intron-variant
rs12951076 -- 48,547,747(+) TTTAT(C/T)GTTAT intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for HOXB-AS1 Gene

Disorders for HOXB-AS1 Gene

Relevant External Links for HOXB-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HOXB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS1 Gene

Publications for HOXB-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 67

Products for HOXB-AS1 Gene

Sources for HOXB-AS1 Gene