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Aliases for HOXB-AS1 Gene

Subcategory (RNA class) for HOXB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXB-AS1 Gene

  • HOXB Cluster Antisense RNA 1 2 3 5
  • HOXB Cluster Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HOXB-AS1 Gene

Previous GeneCards Identifiers for HOXB-AS1 Gene

  • GC17P046622

Summaries for HOXB-AS1 Gene

GeneCards Summary for HOXB-AS1 Gene

HOXB-AS1 (HOXB Cluster Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXB-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXB-AS1 Gene

Genomics for HOXB-AS1 Gene

Regulatory Elements for HOXB-AS1 Gene

Enhancers for HOXB-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H048538 2.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 12.3 +29.6 29615 68 FEZF1 YY1 ZNF143 SP3 MEF2D ZNF610 GLIS1 NBN NR2C1 KDM1A UBE2Z ENSG00000264701 HOXB2 CDK5RAP3 SP2 SKAP1 HOXB9 RN7SL125P GIP ENSG00000250838
GH17H048491 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.8 -50.9 -50853 2 PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZNF766 ZNF143 ZNF207 ZNF548 REST HOXB2 SKAP1 RN7SL125P GIP ENSG00000250838 ENSG00000251461 ENSG00000264243 LINC02075 SP2 HOXB4
GH17H048505 1.5 FANTOM5 ENCODE dbSUPER 12.3 -37.5 -37508 1 HDAC1 PKNOX1 ZSCAN4 SIN3A BMI1 BATF RFX5 ZNF366 RCOR1 ATF7 HOXB2 SKAP1 HOXB-AS1 HOXB1 HOXB4 MIR10A HOXB3 HOXB-AS3 HOXB-AS2 LOC105371808
GH17H048481 1.5 Ensembl ENCODE dbSUPER 11.2 -58.9 -58893 6 PKNOX1 ATF1 TCF12 FOS ATF7 RUNX3 REST SREBF1 SMARCA4 ZSCAN16 HOXB2 SKAP1 HOXB-AS2 HOXB3 HOXB1 HOXB-AS1 HOXB-AS3 HOXB-AS4 HOXB9 CDK5RAP3
GH17H048477 1.3 ENCODE dbSUPER 10.9 -65.1 -65086 1 HDGF PKNOX1 ATF1 ARNT FEZF1 TCF12 ZNF766 GATA2 ELK1 ZNF207 SKAP1 HOXB2 HOXB-AS1 HOXB-AS3 HOXB1 SNX11 ENSG00000266601 GC17P048482 LOC101927166
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXB-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HOXB-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095338 -251 3801 PKNOX1 SIN3A FEZF1 YY1 ZNF766 GLIS2 REST ZNF592 MBD2 GLIS1

Genomic Location for HOXB-AS1 Gene

Chromosome:
17
Start:
48,543,551 bp from pter
End:
48,551,250 bp from pter
Size:
7,700 bases
Orientation:
Plus strand

Genomic View for HOXB-AS1 Gene

Genes around HOXB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXB-AS1 Gene

Proteins for HOXB-AS1 Gene

Post-translational modifications for HOXB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXB-AS1 Gene

Domains & Families for HOXB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXB-AS1 Gene

Function for HOXB-AS1 Gene

Phenotypes From GWAS Catalog for HOXB-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HOXB-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXB-AS1 Gene

Localization for HOXB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXB-AS1 Gene

Pathways & Interactions for HOXB-AS1 Gene

SuperPathways for HOXB-AS1 Gene

No Data Available

Interacting Proteins for HOXB-AS1 Gene

Gene Ontology (GO) - Biological Process for HOXB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXB-AS1 Gene

Drugs & Compounds for HOXB-AS1 Gene

No Compound Related Data Available

Transcripts for HOXB-AS1 Gene

mRNA/cDNA for HOXB-AS1 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXB-AS1 Gene

HOXB cluster antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HOXB-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HOXB-AS1 Gene

No ASD Table

Relevant External Links for HOXB-AS1 Gene

GeneLoc Exon Structure for
HOXB-AS1
ECgene alternative splicing isoforms for
HOXB-AS1

Expression for HOXB-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXB-AS1 Gene

SOURCE GeneReport for Unigene cluster for HOXB-AS1 Gene:

Hs.171806
genes like me logo Genes that share expression patterns with HOXB-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXB-AS1 Gene

Orthologs for HOXB-AS1 Gene

Evolution for HOXB-AS1 Gene

ENSEMBL:
Gene Tree for HOXB-AS1 (if available)
TreeFam:
Gene Tree for HOXB-AS1 (if available)

No data available for Orthologs for HOXB-AS1 Gene

Paralogs for HOXB-AS1 Gene

No data available for Paralogs for HOXB-AS1 Gene

Variants for HOXB-AS1 Gene

Sequence variations from dbSNP and Humsavar for HOXB-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000201296 -- 48,547,448(+) CTAAA(-/T)TCTCT intron-variant
rs1000535670 -- 48,545,897(+) GCTTG(-/T)TATCT intron-variant, upstream-variant-2KB
rs1000896268 -- 48,545,853(+) AAACA(A/G)GCAGA intron-variant, upstream-variant-2KB
rs1001596513 -- 48,546,663(+) AGGAG(A/G)AGAAG intron-variant, upstream-variant-2KB
rs1001623116 -- 48,549,809(+) GAACA(A/T)ATTTG intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for HOXB-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1478n106 CNV deletion 24896259
dgv369n27 CNV loss 19166990
dgv5676n54 CNV loss 21841781
esv2758694 CNV gain 17122850
nsv833469 CNV loss 17160897
nsv833471 CNV gain 17160897
nsv953922 CNV deletion 24416366

Relevant External Links for HOXB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXB-AS1 Gene

Disorders for HOXB-AS1 Gene

Relevant External Links for HOXB-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXB-AS1

No disorders were found for HOXB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXB-AS1 Gene

Publications for HOXB-AS1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 60

Products for HOXB-AS1 Gene

Sources for HOXB-AS1 Gene

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