Aliases for HOXA9 Gene
Aliases for HOXA9 Gene
External Ids for HOXA9 Gene
- HGNC: 5109
- Entrez Gene: 3205
- Ensembl: ENSG00000078399
- OMIM: 142956
- UniProtKB: P31269
Previous HGNC Symbols for HOXA9 Gene
- HOX1G
- HOX1
Previous GeneCards Identifiers for HOXA9 Gene
- GC07U990049
- GC07M026844
- GC07M026910
- GC07M026945
- GC07M026946
- GC07M026975
- GC07M027168
- GC07M027213
- GC07M027214
- GC07M027219
- GC07M027230
- GC07M027254
Summaries for HOXA9 Gene
-
In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation. This gene is highly similar to the abdominal-B (Abd-B) gene of Drosophila. A specific translocation event which causes a fusion between this gene and the NUP98 gene has been associated with myeloid leukemogenesis. Read-through transcription exists between this gene and the upstream homeobox A10 (HOXA10) gene.[provided by RefSeq, Mar 2011]
GeneCards Summary for HOXA9 Gene
HOXA9 (Homeobox A9) is a Protein Coding gene. Diseases associated with HOXA9 include Myeloid Leukemia and Myelodysplastic Syndrome. Among its related pathways are Transcriptional misregulation in cancer. GO annotations related to this gene include sequence-specific DNA binding and enzyme binding. An important paralog of this gene is HOXB9.
UniProtKB/Swiss-Prot for HOXA9 Gene
-
Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA9 Gene
Genomics for HOXA9 Gene
Regulatory Elements for HOXA9 Gene
Enhancers for HOXA9 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HOXA9 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the HOXA9 gene promoter:
Regulatory Element Products
Genomic Location for HOXA9 Gene
- Chromosome:
- 7
- Start:
- 27,162,435 bp from pter
- End:
- 27,175,180 bp from pter
- Size:
- 12,746 bases
- Orientation:
- Minus strand
Genomic View for HOXA9 Gene
Genes around HOXA9 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 7p15.2 by Ensembl
- 7p15.2 by Entrez Gene
- 7p15.2 by HGNC
HOXA9 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HOXA9 Gene
Proteins for HOXA9 Gene
-
Protein details for HOXA9 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P31269-HXA9_HUMAN
- Recommended name:
- Homeobox protein Hox-A9
- Protein Accession:
- P31269
- O43369
- O43429
- Q99820
Protein attributes for HOXA9 Gene
- Size:
- 272 amino acids
- Molecular mass:
- 30172 Da
- Quaternary structure:
-
- Transiently interacts with PRMT5 in TNF-alpha stimulated endothelial cells.
- SequenceCaution:
-
- Sequence=AAC50364.1; Type=Erroneous initiation; Evidence={ECO:0000305};
Post-translational modifications for HOXA9 Gene
- Methylated on Arg-140 by PRMT5; methylation is critical for E-selectin induction.
- Modification sites at PhosphoSitePlus
- Modification sites at neXtProt
Other Protein References for HOXA9 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- EMD Millipore Complete listing of Mono and Polychlonal Antibodies for HOXA9
-
Custom Antibody ServicesOriGene Antibodies for HOXA9
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- Invitrogen Antibodies for HOXA9
- antibodies-online Antibodies for HOXA9: See all 92
- GeneTex HOXA9 antibody for HOXA9
-
Santa Cruz Biotechnology (SCBT) Antibodies for HOXA9
Protein Products
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- ProSpec Recombinant Proteins for HOXA9
- antibodies-online Proteins for HOXA9: See all 9
- Search antibodies-online for peptides
- Search GeneTex for Proteins for HOXA9
Assay Products
No data available for DME Specific Peptides for HOXA9 Gene
Domains & Families for HOXA9 Gene
Gene Families for HOXA9 Gene
Protein Domains for HOXA9 Gene
Suggested Antigen Peptide Sequences for HOXA9 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P31269- Family:
-
- Belongs to the Abd-B homeobox family.
Function for HOXA9 Gene
Molecular function for HOXA9 Gene
- GENATLAS Biochemistry:
- homeo box A9(1G),with two alternatively spliced isoforms,including either exon AB or CD,homologous to mouse Hox-1.7,Drosophila abd-B,fused with NUP98 in acute myeloid leukemia with translocation t(7;11),see AML2
- UniProtKB/Swiss-Prot Function:
- Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005515 | protein binding | IPI | 16189514 |
| GO:0019899 | enzyme binding | IPI | 22269951 |
| GO:0043565 | sequence-specific DNA binding | IEA | -- |
Phenotypes for HOXA9 Gene
- MGI mutant phenotypes for HOXA9:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for HOXA9:
Animal Model Products
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-
ViGene Biosciences lentiviral particle packaged cDNA for HOXA9 gene
-
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CRISPR Products
-
OriGene CRISPR knockouts for HOXA9
-
Santa Cruz Biotechnology (SCBT) CRISPR for HOXA9
- GenScript: Design CRISPR guide RNA sequences for HOXA9
miRNA for HOXA9 Gene
- miRTarBase miRNAs that target HOXA9
-
- hsa-mir-210-3p (MIRT000149)
- hsa-mir-145-5p (MIRT001917)
- hsa-mir-126-3p (MIRT001918)
- hsa-mir-652-3p (MIRT016142)
- hsa-mir-340-5p (MIRT019591)
- hsa-mir-101-3p (MIRT027337)
- hsa-mir-96-5p (MIRT027927)
- hsa-mir-33a-5p (MIRT028225)
- hsa-mir-26b-5p (MIRT030092)
- hsa-mir-21-5p (MIRT030986)
- hsa-mir-18a-5p (MIRT031333)
- hsa-mir-769-3p (MIRT039078)
- hsa-mir-324-5p (MIRT043225)
- hsa-mir-196b-5p (MIRT053330)
- hsa-mir-1277-5p (MIRT103531)
- hsa-mir-3163 (MIRT103533)
- hsa-mir-3154 (MIRT258269)
- hsa-let-7f-2-3p (MIRT320400)
- hsa-mir-1185-2-3p (MIRT320404)
- hsa-mir-1185-1-3p (MIRT320405)
- hsa-mir-1284 (MIRT320406)
- hsa-mir-4470 (MIRT320463)
- hsa-mir-142-3p (MIRT438331)
- hsa-mir-421 (MIRT527499)
- hsa-mir-4709-5p (MIRT527500)
- hsa-mir-181c-3p (MIRT527501)
- hsa-mir-6856-3p (MIRT527502)
- hsa-mir-548av-3p (MIRT541201)
- hsa-mir-3124-3p (MIRT547899)
- hsa-mir-4528 (MIRT547900)
- hsa-mir-548m (MIRT547901)
- hsa-mir-196a-5p (MIRT547902)
- hsa-mir-1271-5p (MIRT557092)
- hsa-mir-505-3p (MIRT557093)
- hsa-mir-195-3p (MIRT557094)
- hsa-mir-16-2-3p (MIRT557095)
- hsa-mir-5002-5p (MIRT557096)
- hsa-mir-136-3p (MIRT557097)
- hsa-mir-548at-5p (MIRT557098)
- hsa-mir-182-5p (MIRT557099)
- hsa-mir-548x-3p (MIRT571984)
- hsa-mir-548j-3p (MIRT571985)
- hsa-mir-548aq-3p (MIRT571986)
- hsa-mir-548am-3p (MIRT571987)
- hsa-mir-548aj-3p (MIRT571988)
- hsa-mir-548ah-3p (MIRT571989)
- hsa-mir-548ae-3p (MIRT571990)
- hsa-mir-548z (MIRT571991)
- hsa-mir-548h-3p (MIRT571992)
- hsa-mir-548d-3p (MIRT571993)
- hsa-mir-548bb-3p (MIRT571994)
- hsa-mir-548ac (MIRT571995)
- hsa-mir-1238-3p (MIRT657302)
- hsa-mir-670-3p (MIRT657303)
- hsa-mir-7977 (MIRT657304)
- hsa-mir-6879-3p (MIRT657305)
- hsa-mir-6773-3p (MIRT657306)
- hsa-mir-5699-3p (MIRT657307)
- hsa-mir-4421 (MIRT657308)
- hsa-mir-6748-3p (MIRT657309)
- hsa-mir-6832-3p (MIRT657310)
- hsa-mir-4267 (MIRT657311)
- hsa-mir-3620-3p (MIRT657312)
- hsa-mir-6865-3p (MIRT657313)
Transcription Factor Targets for HOXA9 Gene
Targeted motifs for HOXA9 Gene
HOMER Transcription Factor Regulatory Elements motif HOXA9
- Consensus sequence: GGCCATAAATCA Submotif: canonical Cell Type: HSC GEO ID: GSE33509
miRNA Products
- Search ViGene Biosciences for HOXA9
Inhibitory RNA Products
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Clone Products
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- Addgene plasmids for HOXA9
Cell Line Products
-
Horizon Cell Lines for HOXA9
-
ViGene Biosciences adenoviral particle packaged cDNA for HOXA9 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for HOXA9 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for HOXA9 gene
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) and Human Phenotype Ontology for HOXA9 Gene
Localization for HOXA9 Gene
Subcellular locations from UniProtKB/Swiss-Prot for HOXA9 Gene
- Nucleus.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| plasma membrane | 1 |
| extracellular | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IDA,IEA | -- |
Pathways & Interactions for HOXA9 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Transcriptional misregulation in cancer | ||
Pathways by source for HOXA9 Gene
1 KEGG pathway for HOXA9 Gene
Interacting Proteins for HOXA9 Gene
Selected Interacting proteins:
P31269-HXA9_HUMAN
ENSP00000343619
for HOXA9 Gene via
MINT
IID
STRING
UniProtKB
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006351 | transcription, DNA-templated | IEA | -- |
| GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
| GO:0007275 | multicellular organism development | IEA,TAS | -- |
| GO:0042118 | endothelial cell activation | IMP | 22269951 |
| GO:0045638 | negative regulation of myeloid cell differentiation | ISS | -- |
Transcripts for HOXA9 Gene
mRNA/cDNA for HOXA9 Gene
- (1) REFSEQ mRNAs :
- (182) Selected AceView cDNA sequences:
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
-
OriGene CRISPR knockouts for HOXA9
-
Santa Cruz Biotechnology (SCBT) CRISPR for HOXA9
- GenScript: Design CRISPR guide RNA sequences for HOXA9
miRNA Products
- Search ViGene Biosciences for HOXA9
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for HOXA9
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-
ViGene Biosciences ready-to-package AAV shRNAs for HOXA9 gene
Clone Products
-
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Flow Cytometry Products
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4a | · | 4b | · | 4c |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||
| SP2: | |||||||||||||
| SP3: |
Expression for HOXA9 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Bone (Muscoskeletal System)
- Osteochondro Mesenchymal Cells Rib
- Sclerotome Cells Lumbar Mesenchymal Sclerotome
-
Cartilage (Muscoskeletal System)
- Osteochondro Mesenchymal Cells Rib
- Sclerotome Cells Lumbar Mesenchymal Sclerotome
-
Somite (Muscoskeletal System)
- Sclerotome Cells Lumbar Mesenchymal Sclerotome
-
Tendon amp Ligament
- Sclerotome Cells Lumbar Mesenchymal Sclerotome
-
Limb (Muscoskeletal System)
- Limb Bud Mesenchyme Cells Limb Bud
-
Mesoderm (Gastrulation Derivatives)
- Limb Bud Mesenchyme Cells Limb Bud
mRNA differential expression in normal tissues according to GTEx for HOXA9 Gene
This gene is overexpressed in Kidney - Cortex (x5.8) and Fallopian Tube (x5.4).
NURSA nuclear receptor signaling pathways regulating expression of HOXA9 Gene:
HOXA9Evidence on tissue expression from TISSUES for HOXA9 Gene
- Bone marrow(4.6)
- Intestine(4.3)
- Blood(2)
Primer Products
-
OriGene qPCR primer pairs and template standards for HOXA9
-
OriGene qPCR primer pairs for HOXA9
No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXA9 Gene
Orthologs for HOXA9 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | HOXA9 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | -- 35 |
|
OneToMany | |
| HOXA9 34 |
|
||||
| cow (Bos Taurus) |
Mammalia | HOXA9 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Hoxa9 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC100909740 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
OneToMany | |
| chicken (Gallus gallus) |
Aves | -- 35 |
|
ManyToMany | |
| -- 35 |
|
ManyToMany | |||
| -- 35 |
|
ManyToMany | |||
| LOC100858551 34 |
|
||||
| lizard (Anolis carolinensis) |
Reptilia | -- 35 |
|
OneToMany | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | hoxa9 34 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | hoxa9-A 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | hoxa9b 35 |
|
ManyToMany | |
| hoxa9a 35 35 |
|
ManyToMany | |||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 35 |
|
OneToMany |
- Species where no ortholog for HOXA9 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for HOXA9 Gene
Paralogs for HOXA9 Gene
(5) SIMAP similar genes for HOXA9 Gene using alignment to 2 proteins:
Variants for HOXA9 Gene
| SNP ID | Clin | Chr 07 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000950303 | -- | 27,165,162(+) | CCGCC(A/G)CCACG | intron-variant, reference, missense | |
| rs1001052090 | -- | 27,167,291(+) | GCCGC(A/G)CGGAT | intron-variant, upstream-variant-2KB | |
| rs1001381193 | -- | 27,165,360(+) | GGGTC(C/G)CCGGC | intron-variant, reference, missense | |
| rs1002348742 | -- | 27,163,080(+) | ACAAT(C/T)ACAAT | nc-transcript-variant, utr-variant-3-prime | |
| rs1003015066 | -- | 27,165,521(+) | TTTCA(C/T)GTAAC | intron-variant, utr-variant-5-prime |
Residual Variation Intolerance Score:
61.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.97;
36.49% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for HOXA9 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HOXA9
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HOXA9 Gene
Disorders for HOXA9 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| myeloid leukemia |
|
|
| myelodysplastic syndrome |
|
|
| leukemia, chronic myeloid, somatic |
|
|
| leukemia, acute myeloid |
|
|
| clivus chordoma |
|
|
Search HOXA9 in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
HXA9_HUMAN- Note=A chromosomal aberration involving HOXA9 is found in a form of acute myeloid leukemia. Translocation t(7;11)(p15;p15) with NUP98.
- Note=A chromosomal aberration involving HOXA9 may contribute to disease progression in chronic myeloid leukemia. Translocation t(7;17)(p15;q23) with MSI2.
Relevant External Links for HOXA9
No data available for Genatlas for HOXA9 Gene
Publications for HOXA9 Gene
- A novel gene, MSI2, encoding a putative RNA-binding protein is recurrently rearranged at disease progression of chronic myeloid leukemia and forms a fusion gene with HOXA9 as a result of the cryptic t(7;17)(p15;q23). (PMID: 12649177) Barbouti A. … Fioretos T. (Cancer Res. 2003) 3 4 22 64
- The t(7;11)(p15;p15) translocation in acute myeloid leukaemia fuses the genes for nucleoporin NUP98 and class I homeoprotein HOXA9. (PMID: 8563754) Borrow J. … Housman D.E. (Nat. Genet. 1996) 3 4 22 64
- HOXA9 methylation by PRMT5 is essential for endothelial cell expression of leukocyte adhesion molecules. (PMID: 22269951) Bandyopadhyay S. … Dicorleto P.E. (Mol. Cell. Biol. 2012) 3 4 64
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
- Reversing HOXA9 oncogene activation by PI3K inhibition: epigenetic mechanism and prognostic significance in human glioblastoma. (PMID: 20068170) Costa B.M. … Costello J.F. (Cancer Res. 2010) 3 22 64
Products for HOXA9 Gene
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- Mammalian expression: PiggyBac
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HOXA9 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
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