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Aliases for HOXA11-AS Gene

Subcategory (RNA class) for HOXA11-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXA11-AS Gene

  • HOXA11 Antisense RNA 2 3 5
  • HOXA Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Homeobox A11 Antisense 2 3
  • HOXA11 Antisense RNA (Non-Protein Coding) 2
  • Homeo Box A11, Opposite Strand Transcript 3
  • Non-Protein Coding RNA 76 2
  • HOXA11-AS1 3
  • NCRNA00076 3
  • HOXA-AS5 3
  • HOXA11AS 3
  • HOXA11S 3

External Ids for HOXA11-AS Gene

Previous HGNC Symbols for HOXA11-AS Gene

  • HOXA11AS

Previous GeneCards Identifiers for HOXA11-AS Gene

  • GC07P027230

Summaries for HOXA11-AS Gene

GeneCards Summary for HOXA11-AS Gene

HOXA11-AS (HOXA11 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA11-AS Gene

Genomics for HOXA11-AS Gene

Regulatory Elements for HOXA11-AS Gene

Enhancers for HOXA11-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F027095 3 VISTA FANTOM5 Ensembl ENCODE 15.8 -46.3 -46323 86.3 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 HOTAIRM1 HOXA-AS2 HOXA10-AS HOXA2 HOXA9 TPM3P4 HMGB3P20 PSMC1P2 RPL23P7 HOXA11-AS
GH07F027181 1 ENCODE 27.8 -0.2 -199 5.1 PKNOX1 FEZF1 ZNF2 GLIS2 KLF7 FOS ZNF623 SMARCB1 CBX8 SMARCA4 HOXA11-AS HOXA10-AS HOTAIRM1 HOXA10 HOXA10-HOXA9
GH07F027191 1.4 FANTOM5 Ensembl ENCODE 16.6 +7.8 7779 2.3 SUZ12 GLIS2 POLR2A PATZ1 PRDM10 EZH2 ZBTB10 RNF2 CBX2 ZBTB8A HOXA11-AS HOXA11 HOXA13 HOTAIRM1 SKAP2 HOXA10 ENSG00000253508 ENSG00000278020
GH07F028080 1.3 FANTOM5 Ensembl ENCODE 9.8 +898.2 898183 5.0 CEBPB NR3C1 EP300 RFX5 YY1 ATF3 SCRT2 STAT3 ZBTB33 ZNF600 JAZF1 JAZF1-AS1 HOTTIP HOXA13 ENSG00000253508 HOXA11 HOXA11-AS HOXA10 HOXA9 MIR196B
GH07F027920 1.1 Ensembl ENCODE 10.7 +736.8 736797 0.6 ZNF76 SIN3A BMI1 FEZF1 ZNF2 RAD21 RFX5 FOS ZNF362 ZNF654 ENSG00000253508 HOTTIP HOXA13 HOXA9 MIR196B HOXA11 HOXA11-AS HOXA10 EVX1 ENSG00000253308
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXA11-AS on UCSC Golden Path with GeneCards custom track

Promoters for HOXA11-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000623633 82 2801 PKNOX1 FEZF1 ZNF2 GLIS2 ZNF623 SMARCB1 CBX8 SMARCA4 GLIS1 SP7

Genomic Location for HOXA11-AS Gene

Chromosome:
7
Start:
27,184,518 bp from pter
End:
27,189,293 bp from pter
Size:
4,776 bases
Orientation:
Plus strand

Genomic View for HOXA11-AS Gene

Genes around HOXA11-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA11-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA11-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA11-AS Gene

Proteins for HOXA11-AS Gene

Post-translational modifications for HOXA11-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA11-AS Gene

Domains & Families for HOXA11-AS Gene

Gene Families for HOXA11-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA11-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA11-AS Gene

Function for HOXA11-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA11-AS Gene

Localization for HOXA11-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA11-AS Gene

Pathways & Interactions for HOXA11-AS Gene

SuperPathways for HOXA11-AS Gene

No Data Available

Interacting Proteins for HOXA11-AS Gene

Gene Ontology (GO) - Biological Process for HOXA11-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA11-AS Gene

Transcripts for HOXA11-AS Gene

mRNA/cDNA for HOXA11-AS Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA11-AS Gene

No ASD Table

Relevant External Links for HOXA11-AS Gene

GeneLoc Exon Structure for
HOXA11-AS
ECgene alternative splicing isoforms for
HOXA11-AS

Expression for HOXA11-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXA11-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXA11-AS Gene

This gene is overexpressed in Prostate (x8.0), Colon - Transverse (x7.2), Uterus (x6.3), Colon - Sigmoid (x6.3), Cervix - Endocervix (x5.8), and Cervix - Ectocervix (x5.3).
genes like me logo Genes that share expression patterns with HOXA11-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXA11-AS Gene

Orthologs for HOXA11-AS Gene

Evolution for HOXA11-AS Gene

ENSEMBL:
Gene Tree for HOXA11-AS (if available)
TreeFam:
Gene Tree for HOXA11-AS (if available)

No data available for Orthologs for HOXA11-AS Gene

Paralogs for HOXA11-AS Gene

No data available for Paralogs for HOXA11-AS Gene

Variants for HOXA11-AS Gene

Sequence variations from dbSNP and Humsavar for HOXA11-AS Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1003386 -- 27,186,509(+) TACCA(C/G)AGAAA intron-variant, upstream-variant-2KB
rs10256695 -- 27,184,228(+) GCAGG(C/T)ATGCC intron-variant, upstream-variant-2KB
rs1057459 -- 27,189,211(+) CCTCT(C/T)TGGGG nc-transcript-variant
rs111947206 -- 27,185,344(+) CCTTT(-/T)CCCCC upstream-variant-2KB
rs112142694 -- 27,189,012(+) CCGGG(A/C)CCCAT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HOXA11-AS Gene

Variant ID Type Subtype PubMed ID
nsv824042 CNV gain 20364138
nsv7393 OTHER inversion 18451855
nsv606469 CNV loss 21841781
nsv606468 CNV loss 21841781
nsv606465 CNV loss 21841781
nsv5675 CNV insertion 18451855
dgv1094n67 CNV gain 20364138

Relevant External Links for HOXA11-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXA11-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXA11-AS Gene

Disorders for HOXA11-AS Gene

Relevant External Links for HOXA11-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA11-AS

No disorders were found for HOXA11-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA11-AS Gene

Publications for HOXA11-AS Gene

  1. HOXA11 silencing and endogenous HOXA11 antisense ribonucleic acid in the uterine endometrium. (PMID: 12050232) Chau Y.M. … Taylor H.S. (J. Clin. Endocrinol. Metab. 2002) 2 3 64
  2. Evolutionary conservation and tissue-specific processing of hoxa 11 antisense transcripts. (PMID: 9745033) Potter S.S. … Branford W.W. (Mamm. Genome 1998) 2 3 64
  3. A novel cell cycle-associated lncRNA, HOXA11-AS, is transcribed from the 5-prime end of the HOXA transcript and is a biomarker of progression in glioma. (PMID: 26828136) Wang Q. … Han L. (Cancer Lett. 2016) 3 64
  4. LncRNA HOXA11-AS Promotes Proliferation and Invasion of Gastric Cancer by Scaffolding the Chromatin Modification Factors PRC2, LSD1, and DNMT1. (PMID: 27651312) Sun M. … Wang J. (Cancer Res. 2016) 3 64
  5. A functional variant in HOXA11-AS, a novel long non-coding RNA, inhibits the oncogenic phenotype of epithelial ovarian cancer. (PMID: 26430965) Richards E.J. … Cheng J.Q. (Oncotarget 2015) 3 64

Products for HOXA11-AS Gene

Sources for HOXA11-AS Gene

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