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Aliases for HOXA11-AS Gene

Subcategory (RNA class) for HOXA11-AS Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HOXA11-AS Gene

  • HOXA11 Antisense RNA 2 3
  • HOXA Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA 1 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA (Non-Protein Coding) 2 3
  • Homeobox A11 Antisense 2 3
  • HOXA11S 3 6
  • Homeo Box A11, Opposite Strand Transcript 3
  • Non-Protein Coding RNA 76 2
  • Homeo Box A11, Antisense 3
  • HOXA11-AS1 3
  • NCRNA00076 3
  • HOXA-AS5 3
  • HOXA11AS 3

External Ids for HOXA11-AS Gene

Previous HGNC Symbols for HOXA11-AS Gene

  • HOXA11AS

Previous GeneCards Identifiers for HOXA11-AS Gene

  • GC07P027230

Summaries for HOXA11-AS Gene

GeneCards Summary for HOXA11-AS Gene

HOXA11-AS (HOXA11 Antisense RNA) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA11-AS Gene

Genomics for HOXA11-AS Gene

Genomic Location for HOXA11-AS Gene

Start:
27,184,518 bp from pter
End:
27,189,293 bp from pter
Size:
4,776 bases
Orientation:
Plus strand

Genomic View for HOXA11-AS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOXA11-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA11-AS Gene

No data available for Regulatory Elements for HOXA11-AS Gene

Proteins for HOXA11-AS Gene

Post-translational modifications for HOXA11-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA11-AS Gene

Domains for HOXA11-AS Gene

Gene Families for HOXA11-AS Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA11-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA11-AS Gene

Function for HOXA11-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HOXA11-AS Gene

Localization for HOXA11-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA11-AS Gene

Pathways for HOXA11-AS Gene

SuperPathways for HOXA11-AS Gene

No Data Available

Interacting Proteins for HOXA11-AS Gene

Gene Ontology (GO) - Biological Process for HOXA11-AS Gene

None

No data available for Pathways by source for HOXA11-AS Gene

Transcripts for HOXA11-AS Gene

mRNA/cDNA for HOXA11-AS Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HOXA11-AS
    • Block miRNA regulation of HOXA11-AS using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for HOXA11-AS

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for HOXA11-AS Gene

    No ASD Table

    Relevant External Links for HOXA11-AS Gene

    GeneLoc Exon Structure for
    HOXA11-AS
    ECgene alternative splicing isoforms for
    HOXA11-AS

    Expression for HOXA11-AS Gene

    mRNA expression in normal human tissues for HOXA11-AS Gene

    mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

    mRNA differential expression in normal tissues according to GTEx for HOXA11-AS Gene

    This gene is overexpressed in Prostate (8.0), Colon - Transverse (7.2), Uterus (6.3), Colon - Sigmoid (6.3), Cervix - Endocervix (5.8), and Cervix - Ectocervix (5.3).
    genes like me logo Genes that share expressions with HOXA11-AS: view

    In Situ Assay Products

    No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HOXA11-AS Gene

    Orthologs for HOXA11-AS Gene

    This gene was present in the common ancestor of human and mouse.

    Orthologs for HOXA11-AS Gene

    Organism Taxonomy Gene Similarity Type Details
    mouse
    (Mus musculus)
    Mammalia Hoxa11as 16
    Species with no ortholog for HOXA11-AS:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • chimpanzee (Pan troglodytes)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for HOXA11-AS Gene

    ENSEMBL:
    Gene Tree for HOXA11-AS (if available)
    TreeFam:
    Gene Tree for HOXA11-AS (if available)

    Paralogs for HOXA11-AS Gene

    No data available for Paralogs for HOXA11-AS Gene

    Variants for HOXA11-AS Gene

    Sequence variations from dbSNP and Humsavar for HOXA11-AS Gene

    SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
    rs916880 -- 27,189,500(+) CAGGC(A/G)GCTTA downstream-variant-500B
    rs1057459 -- 27,189,211(+) CCTCT(C/T)TGGGG nc-transcript-variant
    rs2285724 -- 27,187,740(+) GGCTC(A/G)CCCCG intron-variant
    rs3214167 -- 27,189,047(+) CCGCC(-/C)GGAGA nc-transcript-variant
    rs17427896 -- 27,189,482(+) GCAAG(G/T)ATCGT downstream-variant-500B

    Relevant External Links for HOXA11-AS Gene

    HapMap Linkage Disequilibrium report
    HOXA11-AS

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HOXA11-AS Gene

    Disorders for HOXA11-AS Gene

    No disorders were found for HOXA11-AS Gene.

    No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HOXA11-AS Gene

    Publications for HOXA11-AS Gene

    1. Evolutionary conservation and tissue-specific processing of hoxa 11 antisense transcripts. (PMID: 9745033) Potter S.S. … Branford W.W. (Mamm. Genome 1998) 2 3
    2. HOXA11 silencing and endogenous HOXA11 antisense ribonucleic acid in the uterine endometrium. (PMID: 12050232) Chau Y.M. … Taylor H.S. (J. Clin. Endocrinol. Metab. 2002) 2 3
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    4. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3
    5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

    Products for HOXA11-AS Gene

    Sources for HOXA11-AS Gene

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