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Aliases for HOXA11-AS Gene

Subcategory (RNA class) for HOXA11-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXA11-AS Gene

  • HOXA11 Antisense RNA 2 3 5
  • HOXA Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Homeobox A11 Antisense 2 3
  • HOXA11 Antisense RNA (Non-Protein Coding) 2
  • Homeo Box A11, Opposite Strand Transcript 3
  • Non-Protein Coding RNA 76 2
  • HOXA11-AS1 3
  • NCRNA00076 3
  • HOXA-AS5 3
  • HOXA11AS 3
  • HOXA11S 3

External Ids for HOXA11-AS Gene

Previous HGNC Symbols for HOXA11-AS Gene

  • HOXA11AS

Previous GeneCards Identifiers for HOXA11-AS Gene

  • GC07P027230

Summaries for HOXA11-AS Gene

GeneCards Summary for HOXA11-AS Gene

HOXA11-AS (HOXA11 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HOXA11-AS Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA11-AS Gene

Genomics for HOXA11-AS Gene

Regulatory Elements for HOXA11-AS Gene

Enhancers for HOXA11-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H027095 3.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 15.8 -46.3 -46323 86.3 MLX FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC ZC3H11A SSRP1 ZNF610 HNRNPA2B1 HOTAIRM1 HOXA10-AS HOXA2 HOXA-AS2 CBX3 HOXA9 HOXA11-AS HOXA10 TPM3P4
GH07H027181 1.5 Ensembl ENCODE dbSUPER 27.7 -0.2 -199 5.1 HDGF PKNOX1 FEZF1 ZNF2 GLIS2 ELK1 KLF7 REST SMARCB1 ZNF623 HOXA11-AS HOXA10-AS HOTAIRM1 HOXA10 HOXA10-HOXA9
GH07H028082 1.3 FANTOM5 Ensembl ENCODE 9.7 +899.2 899166 2.6 FOXA2 CEBPB REST EP300 RFX5 YY1 JUND ATF3 POLR2A STAT3 JAZF1 JAZF1-AS1 HOXA11 HOXA11-AS HOXA9 HOXA10 HOXA13 ENSG00000253508 HOTTIP EVX1-AS
GH07H027920 1.1 Ensembl ENCODE 10.7 +736.8 736797 0.6 ZNF76 BMI1 FEZF1 ZNF2 RAD21 RFX5 ZSCAN5C ZNF654 ZNF362 ZEB2 ENSG00000253508 HOTTIP HOXA13 HOXA11 HOXA11-AS HOXA10 HOXA9 ENSG00000253308 EVX1 EVX1-AS
GH07H028018 1.1 Ensembl ENCODE 10.3 +835.2 835235 2.2 GTF2F1 CTCF RB1 MAX ZNF2 RAD21 RFX5 ZBTB48 SMC3 ZNF143 HOXA13 ENSG00000253508 HOTTIP HOXA11 HOXA10 HOXA11-AS HOXA9 PIR54187 PIR39851
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXA11-AS on UCSC Golden Path with GeneCards custom track

Promoters for HOXA11-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000209857 -18 601 CTCF MXI1 SUZ12 MAX HIC1 ZFHX2 ELK1 POLR2A EGR2 EZH2

Genomic Locations for HOXA11-AS Gene

Genomic Locations for HOXA11-AS Gene
chr7:27,184,518-27,189,293
(GRCh38/hg38)
Size:
4,776 bases
Orientation:
Plus strand
chr7:27,224,137-27,228,912
(GRCh37/hg19)

Genomic View for HOXA11-AS Gene

Genes around HOXA11-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA11-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA11-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA11-AS Gene

Proteins for HOXA11-AS Gene

Post-translational modifications for HOXA11-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA11-AS Gene

Domains & Families for HOXA11-AS Gene

Gene Families for HOXA11-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA11-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA11-AS Gene

Function for HOXA11-AS Gene

Phenotypes From GWAS Catalog for HOXA11-AS Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA11-AS Gene

Localization for HOXA11-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXA11-AS Gene

Pathways & Interactions for HOXA11-AS Gene

SuperPathways for HOXA11-AS Gene

No Data Available

Interacting Proteins for HOXA11-AS Gene

Gene Ontology (GO) - Biological Process for HOXA11-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA11-AS Gene

Drugs & Compounds for HOXA11-AS Gene

No Compound Related Data Available

Transcripts for HOXA11-AS Gene

mRNA/cDNA for HOXA11-AS Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA11-AS Gene

No ASD Table

Relevant External Links for HOXA11-AS Gene

GeneLoc Exon Structure for
HOXA11-AS
ECgene alternative splicing isoforms for
HOXA11-AS

Expression for HOXA11-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXA11-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXA11-AS Gene

This gene is overexpressed in Prostate (x8.0), Colon - Transverse (x7.2), Uterus (x6.3), Colon - Sigmoid (x6.3), Cervix - Endocervix (x5.8), and Cervix - Ectocervix (x5.3).
genes like me logo Genes that share expression patterns with HOXA11-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXA11-AS Gene

Orthologs for HOXA11-AS Gene

Evolution for HOXA11-AS Gene

ENSEMBL:
Gene Tree for HOXA11-AS (if available)
TreeFam:
Gene Tree for HOXA11-AS (if available)

No data available for Orthologs for HOXA11-AS Gene

Paralogs for HOXA11-AS Gene

No data available for Paralogs for HOXA11-AS Gene

Variants for HOXA11-AS Gene

Sequence variations from dbSNP and Humsavar for HOXA11-AS Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000053708 -- 27,188,643(+) GAAAG(A/T)CCCGA nc-transcript-variant
rs1000416261 -- 27,188,780(+) ACAGC(A/G)CGGGC nc-transcript-variant
rs1000472153 -- 27,188,484(+) GGGCG(A/C)GGGGT intron-variant
rs1000801577 -- 27,187,286(+) ATGTC(C/T)TTTGA intron-variant
rs1001732353 -- 27,189,348(+) GGAGG(A/G)CGCCG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HOXA11-AS Gene

Variant ID Type Subtype PubMed ID
dgv1094n67 CNV gain 20364138
nsv5675 CNV insertion 18451855
nsv606465 CNV loss 21841781
nsv606468 CNV loss 21841781
nsv606469 CNV loss 21841781
nsv7393 OTHER inversion 18451855
nsv824042 CNV gain 20364138

Relevant External Links for HOXA11-AS Gene

Human Gene Mutation Database (HGMD)
HOXA11-AS
SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXA11-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXA11-AS Gene

Disorders for HOXA11-AS Gene

Relevant External Links for HOXA11-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA11-AS

No disorders were found for HOXA11-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA11-AS Gene

Publications for HOXA11-AS Gene

  1. HOXA11 silencing and endogenous HOXA11 antisense ribonucleic acid in the uterine endometrium. (PMID: 12050232) Chau YM … Taylor HS (The Journal of clinical endocrinology and metabolism 2002) 2 3 60
  2. Evolutionary conservation and tissue-specific processing of Hoxa 11 antisense transcripts. (PMID: 9745033) Potter SS … Branford WW (Mammalian genome : official journal of the International Mammalian Genome Society 1998) 2 3 60
  3. LncRNA HOXA11-AS Promotes Proliferation and Invasion of Gastric Cancer by Scaffolding the Chromatin Modification Factors PRC2, LSD1, and DNMT1. (PMID: 27651312) Sun M … Wang J (Cancer research 2016) 3 60
  4. A novel cell cycle-associated lncRNA, HOXA11-AS, is transcribed from the 5-prime end of the HOXA transcript and is a biomarker of progression in glioma. (PMID: 26828136) Wang Q … Han L (Cancer letters 2016) 3 60
  5. A functional variant in HOXA11-AS, a novel long non-coding RNA, inhibits the oncogenic phenotype of epithelial ovarian cancer. (PMID: 26430965) Richards EJ … Cheng JQ (Oncotarget 2015) 3 60

Products for HOXA11-AS Gene

Sources for HOXA11-AS Gene

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