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Aliases for HOXA11-AS Gene

Subcategory (RNA class) for HOXA11-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXA11-AS Gene

  • HOXA11 Antisense RNA 2 3 5
  • HOXA Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA 1 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA (Non-Protein Coding) 2 3
  • Homeobox A11 Antisense 2 3
  • Homeo Box A11, Opposite Strand Transcript 3
  • Non-Protein Coding RNA 76 2
  • Homeo Box A11, Antisense 3
  • HOXA11-AS1 3
  • NCRNA00076 3
  • HOXA-AS5 3
  • HOXA11AS 3
  • HOXA11S 3

External Ids for HOXA11-AS Gene

Previous HGNC Symbols for HOXA11-AS Gene

  • HOXA11AS

Previous GeneCards Identifiers for HOXA11-AS Gene

  • GC07P027230

Summaries for HOXA11-AS Gene

GeneCards Summary for HOXA11-AS Gene

HOXA11-AS (HOXA11 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA11-AS Gene

Genomics for HOXA11-AS Gene

Regulatory Elements for HOXA11-AS Gene

Promoters for HOXA11-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HOXA11-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for HOXA11-AS Gene

Chromosome:
7
Start:
27,184,518 bp from pter
End:
27,189,293 bp from pter
Size:
4,776 bases
Orientation:
Plus strand

Genomic View for HOXA11-AS Gene

Genes around HOXA11-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA11-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA11-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA11-AS Gene

Proteins for HOXA11-AS Gene

Post-translational modifications for HOXA11-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA11-AS Gene

Domains & Families for HOXA11-AS Gene

Gene Families for HOXA11-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA11-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA11-AS Gene

Function for HOXA11-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA11-AS Gene

Localization for HOXA11-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA11-AS Gene

Pathways & Interactions for HOXA11-AS Gene

SuperPathways for HOXA11-AS Gene

No Data Available

Interacting Proteins for HOXA11-AS Gene

Gene Ontology (GO) - Biological Process for HOXA11-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA11-AS Gene

Drugs & Compounds for HOXA11-AS Gene

No Compound Related Data Available

Transcripts for HOXA11-AS Gene

mRNA/cDNA for HOXA11-AS Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA11-AS Gene

No ASD Table

Relevant External Links for HOXA11-AS Gene

GeneLoc Exon Structure for
HOXA11-AS
ECgene alternative splicing isoforms for
HOXA11-AS

Expression for HOXA11-AS Gene

mRNA expression in normal human tissues for HOXA11-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXA11-AS Gene

This gene is overexpressed in Prostate (x8.0), Colon - Transverse (x7.2), Uterus (x6.3), Colon - Sigmoid (x6.3), Cervix - Endocervix (x5.8), and Cervix - Ectocervix (x5.3).
genes like me logo Genes that share expression patterns with HOXA11-AS: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HOXA11-AS Gene

Orthologs for HOXA11-AS Gene

Evolution for HOXA11-AS Gene

ENSEMBL:
Gene Tree for HOXA11-AS (if available)
TreeFam:
Gene Tree for HOXA11-AS (if available)

No data available for Orthologs for HOXA11-AS Gene

Paralogs for HOXA11-AS Gene

No data available for Paralogs for HOXA11-AS Gene

Variants for HOXA11-AS Gene

Sequence variations from dbSNP and Humsavar for HOXA11-AS Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs916880 -- 27,189,500(+) CAGGC(A/G)GCTTA downstream-variant-500B
rs1057459 -- 27,189,211(+) CCTCT(C/T)TGGGG nc-transcript-variant
rs2285724 -- 27,187,740(+) GGCTC(A/G)CCCCG intron-variant
rs3214167 -- 27,189,047(+) CCGCC(-/C)GGAGA nc-transcript-variant
rs17427896 -- 27,189,482(+) GCAAG(G/T)ATCGT downstream-variant-500B

Relevant External Links for HOXA11-AS Gene

HapMap Linkage Disequilibrium report
HOXA11-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXA11-AS Gene

Disorders for HOXA11-AS Gene

Relevant External Links for HOXA11-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA11-AS

No disorders were found for HOXA11-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA11-AS Gene

Publications for HOXA11-AS Gene

  1. HOXA11 silencing and endogenous HOXA11 antisense ribonucleic acid in the uterine endometrium. (PMID: 12050232) Chau Y.M. … Taylor H.S. (J. Clin. Endocrinol. Metab. 2002) 2 3 67
  2. Evolutionary conservation and tissue-specific processing of hoxa 11 antisense transcripts. (PMID: 9745033) Potter S.S. … Branford W.W. (Mamm. Genome 1998) 2 3
  3. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Comprehensive microarray analysis of Hoxa11/Hoxd11 mutant kidney development. (PMID: 16581055) Schwab K. … Potter S.S. (Dev. Biol. 2006) 23

Products for HOXA11-AS Gene

Sources for HOXA11-AS Gene

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