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Aliases for HOXA11-AS Gene

Subcategory (RNA class) for HOXA11-AS Gene


Quality Score for this RNA gene is


Aliases for HOXA11-AS Gene

  • HOXA11 Antisense RNA 2 3
  • HOXA Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA 1 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA (Non-Protein Coding) 2 3
  • Homeobox A11 Antisense 2 3
  • HOXA11S 3 6
  • Homeo Box A11, Opposite Strand Transcript 3
  • Non-Protein Coding RNA 76 2
  • Homeo Box A11, Antisense 3
  • HOXA11-AS1 3
  • NCRNA00076 3
  • HOXA-AS5 3
  • HOXA11AS 3

External Ids for HOXA11-AS Gene

Previous HGNC Symbols for HOXA11-AS Gene

  • HOXA11AS

Previous GeneCards Identifiers for HOXA11-AS Gene

  • GC07P027230

Summaries for HOXA11-AS Gene

GeneCards Summary for HOXA11-AS Gene

HOXA11-AS (HOXA11 Antisense RNA) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA11-AS Gene

Genomics for HOXA11-AS Gene

Genomic Location for HOXA11-AS Gene

27,184,518 bp from pter
27,189,293 bp from pter
4,776 bases
Plus strand

Genomic View for HOXA11-AS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOXA11-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA11-AS Gene

No data available for Regulatory Elements for HOXA11-AS Gene

Proteins for HOXA11-AS Gene

Post-translational modifications for HOXA11-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA11-AS Gene

Domains for HOXA11-AS Gene

Gene Families for HOXA11-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA11-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA11-AS Gene

Function for HOXA11-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA11-AS Gene

Localization for HOXA11-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA11-AS Gene

Pathways for HOXA11-AS Gene

SuperPathways for HOXA11-AS Gene

No Data Available

Interacting Proteins for HOXA11-AS Gene

Gene Ontology (GO) - Biological Process for HOXA11-AS Gene


No data available for Pathways by source for HOXA11-AS Gene

Transcripts for HOXA11-AS Gene

mRNA/cDNA for HOXA11-AS Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA11-AS Gene

No ASD Table

Relevant External Links for HOXA11-AS Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXA11-AS Gene

mRNA expression in normal human tissues for HOXA11-AS Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HOXA11-AS Gene

This gene is overexpressed in Prostate (8.0), Colon - Transverse (7.2), Uterus (6.3), Colon - Sigmoid (6.3), Cervix - Endocervix (5.8), and Cervix - Ectocervix (5.3).
genes like me logo Genes that share expressions with HOXA11-AS: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HOXA11-AS Gene

Orthologs for HOXA11-AS Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for HOXA11-AS Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Hoxa11as 16
Species with no ortholog for HOXA11-AS:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HOXA11-AS Gene

Gene Tree for HOXA11-AS (if available)
Gene Tree for HOXA11-AS (if available)

Paralogs for HOXA11-AS Gene

No data available for Paralogs for HOXA11-AS Gene

Variants for HOXA11-AS Gene

Sequence variations from dbSNP and Humsavar for HOXA11-AS Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs916880 -- 27,189,500(+) CAGGC(A/G)GCTTA downstream-variant-500B
rs1057459 -- 27,189,211(+) CCTCT(C/T)TGGGG nc-transcript-variant
rs2285724 -- 27,187,740(+) GGCTC(A/G)CCCCG intron-variant
rs3214167 -- 27,189,047(+) CCGCC(-/C)GGAGA nc-transcript-variant
rs17427896 -- 27,189,482(+) GCAAG(G/T)ATCGT downstream-variant-500B

Relevant External Links for HOXA11-AS Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HOXA11-AS Gene

Disorders for HOXA11-AS Gene

No disorders were found for HOXA11-AS Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HOXA11-AS Gene

Publications for HOXA11-AS Gene

  1. Evolutionary conservation and tissue-specific processing of hoxa 11 antisense transcripts. (PMID: 9745033) Potter S.S. … Branford W.W. (Mamm. Genome 1998) 2 3
  2. HOXA11 silencing and endogenous HOXA11 antisense ribonucleic acid in the uterine endometrium. (PMID: 12050232) Chau Y.M. … Taylor H.S. (J. Clin. Endocrinol. Metab. 2002) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for HOXA11-AS Gene

Sources for HOXA11-AS Gene

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