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Aliases for HOXA11-AS Gene

Subcategory (RNA class) for HOXA11-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXA11-AS Gene

  • HOXA11 Antisense RNA 2 3 5
  • HOXA Cluster Antisense RNA 5 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA 1 (Non-Protein Coding) 2 3
  • HOXA11 Antisense RNA (Non-Protein Coding) 2 3
  • Homeobox A11 Antisense 2 3
  • Homeo Box A11, Opposite Strand Transcript 3
  • Non-Protein Coding RNA 76 2
  • Homeo Box A11, Antisense 3
  • HOXA11-AS1 3
  • NCRNA00076 3
  • HOXA-AS5 3
  • HOXA11AS 3
  • HOXA11S 3

External Ids for HOXA11-AS Gene

Previous HGNC Symbols for HOXA11-AS Gene

  • HOXA11AS

Previous GeneCards Identifiers for HOXA11-AS Gene

  • GC07P027230

Summaries for HOXA11-AS Gene

GeneCards Summary for HOXA11-AS Gene

HOXA11-AS (HOXA11 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA11-AS Gene

Genomics for HOXA11-AS Gene

Regulatory Elements for HOXA11-AS Gene

Enhancers for HOXA11-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around HOXA11-AS on UCSC Golden Path with GeneCards custom track

Promoters for HOXA11-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for HOXA11-AS Gene

Chromosome:
7
Start:
27,184,518 bp from pter
End:
27,189,293 bp from pter
Size:
4,776 bases
Orientation:
Plus strand

Genomic View for HOXA11-AS Gene

Genes around HOXA11-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA11-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA11-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA11-AS Gene

Proteins for HOXA11-AS Gene

Post-translational modifications for HOXA11-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA11-AS Gene

Domains & Families for HOXA11-AS Gene

Gene Families for HOXA11-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA11-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA11-AS Gene

Function for HOXA11-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA11-AS Gene

Localization for HOXA11-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA11-AS Gene

Pathways & Interactions for HOXA11-AS Gene

SuperPathways for HOXA11-AS Gene

No Data Available

Interacting Proteins for HOXA11-AS Gene

Gene Ontology (GO) - Biological Process for HOXA11-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA11-AS Gene

Drugs & Compounds for HOXA11-AS Gene

No Compound Related Data Available

Transcripts for HOXA11-AS Gene

mRNA/cDNA for HOXA11-AS Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA11-AS Gene

No ASD Table

Relevant External Links for HOXA11-AS Gene

GeneLoc Exon Structure for
HOXA11-AS
ECgene alternative splicing isoforms for
HOXA11-AS

Expression for HOXA11-AS Gene

mRNA expression in normal human tissues for HOXA11-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXA11-AS Gene

This gene is overexpressed in Prostate (x8.0), Colon - Transverse (x7.2), Uterus (x6.3), Colon - Sigmoid (x6.3), Cervix - Endocervix (x5.8), and Cervix - Ectocervix (x5.3).
genes like me logo Genes that share expression patterns with HOXA11-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXA11-AS Gene

Orthologs for HOXA11-AS Gene

Evolution for HOXA11-AS Gene

ENSEMBL:
Gene Tree for HOXA11-AS (if available)
TreeFam:
Gene Tree for HOXA11-AS (if available)

No data available for Orthologs for HOXA11-AS Gene

Paralogs for HOXA11-AS Gene

No data available for Paralogs for HOXA11-AS Gene

Variants for HOXA11-AS Gene

Sequence variations from dbSNP and Humsavar for HOXA11-AS Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs2285724 -- 27,187,740(+) GGCTC(A/G)CCCCG intron-variant
rs3214167 -- 27,189,047(+) CCGCC(-/C)GGAGA nc-transcript-variant
rs916880 -- 27,189,500(+) CAGGC(A/G)GCTTA downstream-variant-500B
rs1057459 -- 27,189,211(+) CCTCT(C/T)TGGGG nc-transcript-variant
rs113250176 -- 27,189,371(+) CAGGC(A/G)GGGTC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HOXA11-AS Gene

Variant ID Type Subtype PubMed ID
dgv1094n67 CNV gain 20364138
nsv5675 CNV insertion 18451855
nsv606465 CNV loss 21841781
nsv606468 CNV loss 21841781
nsv606469 CNV loss 21841781
nsv7393 OTHER inversion 18451855
nsv824042 CNV gain 20364138

Relevant External Links for HOXA11-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXA11-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXA11-AS Gene

Disorders for HOXA11-AS Gene

Relevant External Links for HOXA11-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA11-AS

No disorders were found for HOXA11-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA11-AS Gene

Publications for HOXA11-AS Gene

  1. HOXA11 silencing and endogenous HOXA11 antisense ribonucleic acid in the uterine endometrium. (PMID: 12050232) Chau Y.M. … Taylor H.S. (J. Clin. Endocrinol. Metab. 2002) 2 3 65
  2. Evolutionary conservation and tissue-specific processing of hoxa 11 antisense transcripts. (PMID: 9745033) Potter S.S. … Branford W.W. (Mamm. Genome 1998) 2 3 65
  3. A functional variant in HOXA11-AS, a novel long non-coding RNA, inhibits the oncogenic phenotype of epithelial ovarian cancer. (PMID: 26430965) Richards E.J. … Cheng J.Q. (Oncotarget 2015) 3 65
  4. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3 65
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 65

Products for HOXA11-AS Gene

Sources for HOXA11-AS Gene

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