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Aliases for HOXA10-HOXA9 Gene

Subcategory (RNA class) for HOXA10-HOXA9 Gene


Quality Score for this RNA gene is


Aliases for HOXA10-HOXA9 Gene

  • HOXA10-HOXA9 Readthrough 3

External Ids for HOXA10-HOXA9 Gene

Previous GeneCards Identifiers for HOXA10-HOXA9 Gene

  • GC07U903154
  • GC07M027231
  • GC07M027255

Summaries for HOXA10-HOXA9 Gene

Entrez Gene Summary for HOXA10-HOXA9 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring HOXA10 (homeobox A10) and HOXA9 (full description written out) genes on chromosome 7. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for HOXA10-HOXA9 Gene

HOXA10-HOXA9 (HOXA10-HOXA9 Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for HOXA10-HOXA9 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA10-HOXA9 Gene

Genomics for HOXA10-HOXA9 Gene

Regulatory Elements for HOXA10-HOXA9 Gene

Enhancers for HOXA10-HOXA9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXA10-HOXA9 on UCSC Golden Path with GeneCards custom track

Promoters for HOXA10-HOXA9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000209853 261 401 HDGF PKNOX1 FEZF1 RAD21 ZNF2 ZNF121 GLIS2 ZNF366 ZNF143 ZNF654

Genomic Location for HOXA10-HOXA9 Gene

27,162,438 bp from pter
27,180,261 bp from pter
17,824 bases
Minus strand

Genomic View for HOXA10-HOXA9 Gene

Genes around HOXA10-HOXA9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA10-HOXA9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA10-HOXA9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA10-HOXA9 Gene

Proteins for HOXA10-HOXA9 Gene

Post-translational modifications for HOXA10-HOXA9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA10-HOXA9 Gene

Domains & Families for HOXA10-HOXA9 Gene

Gene Families for HOXA10-HOXA9 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA10-HOXA9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA10-HOXA9 Gene

Function for HOXA10-HOXA9 Gene

Phenotypes From GWAS Catalog for HOXA10-HOXA9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA10-HOXA9 Gene

Localization for HOXA10-HOXA9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXA10-HOXA9 Gene

Pathways & Interactions for HOXA10-HOXA9 Gene

SuperPathways for HOXA10-HOXA9 Gene

No Data Available

Interacting Proteins for HOXA10-HOXA9 Gene

Gene Ontology (GO) - Biological Process for HOXA10-HOXA9 Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXA10-HOXA9 Gene

Drugs & Compounds for HOXA10-HOXA9 Gene

No Compound Related Data Available

Transcripts for HOXA10-HOXA9 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA10-HOXA9 Gene

No ASD Table

Relevant External Links for HOXA10-HOXA9 Gene

GeneLoc Exon Structure for

No data available for mRNA/cDNA for HOXA10-HOXA9 Gene

Expression for HOXA10-HOXA9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXA10-HOXA9 Gene

genes like me logo Genes that share expression patterns with HOXA10-HOXA9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXA10-HOXA9 Gene

Orthologs for HOXA10-HOXA9 Gene

No data available for Orthologs and Evolution for HOXA10-HOXA9 Gene

Paralogs for HOXA10-HOXA9 Gene

No data available for Paralogs for HOXA10-HOXA9 Gene

Variants for HOXA10-HOXA9 Gene

Sequence variations from dbSNP and Humsavar for HOXA10-HOXA9 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000620358 -- 27,175,060(+) TACAA(C/T)TCCTG intron-variant, upstream-variant-2KB
rs1000868533 -- 27,172,972(+) TCTGC(G/T)GGCGA intron-variant
rs1000950303 -- 27,165,162(+) CCGCC(A/G)CCACG intron-variant, reference, missense
rs1000972643 -- 27,175,463(+) CATTT(C/T)AACGA intron-variant, upstream-variant-2KB
rs1000999605 -- 27,167,615(+) CTGAT(C/T)ATTTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXA10-HOXA9 Gene

Variant ID Type Subtype PubMed ID
dgv1094n67 CNV gain 20364138
nsv5675 CNV insertion 18451855
nsv606465 CNV loss 21841781
nsv606468 CNV loss 21841781
nsv7393 OTHER inversion 18451855
nsv824042 CNV gain 20364138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for HOXA10-HOXA9 Gene

Disorders for HOXA10-HOXA9 Gene

Relevant External Links for HOXA10-HOXA9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HOXA10-HOXA9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA10-HOXA9 Gene

Publications for HOXA10-HOXA9 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 60
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 60

Products for HOXA10-HOXA9 Gene

Sources for HOXA10-HOXA9 Gene

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