Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HOXA10-HOXA9 Gene

Subcategory (RNA class) for HOXA10-HOXA9 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for HOXA10-HOXA9 Gene

  • HOXA10-HOXA9 Readthrough 3

External Ids for HOXA10-HOXA9 Gene

Previous GeneCards Identifiers for HOXA10-HOXA9 Gene

  • GC07U903154
  • GC07M027231
  • GC07M027255

Summaries for HOXA10-HOXA9 Gene

Entrez Gene Summary for HOXA10-HOXA9 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring HOXA10 (homeobox A10) and HOXA9 (full description written out) genes on chromosome 7. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Mar 2011]

GeneCards Summary for HOXA10-HOXA9 Gene

HOXA10-HOXA9 (HOXA10-HOXA9 Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for HOXA10-HOXA9 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA10-HOXA9 Gene

Genomics for HOXA10-HOXA9 Gene

GeneHancer (GH) Regulatory Elements for HOXA10-HOXA9 Gene

Promoters and enhancers for HOXA10-HOXA9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I027181 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.8 -4.1 -4058 5.1 HDGF PKNOX1 FEZF1 ZNF2 GLIS2 ELK1 KLF7 REST SMARCB1 ZNF623 HOXA11-AS ENSG00000276496 ENSG00000278334 ENSG00000273961 GC07P027261 GC07P027263 HOXA11 HOXA10-AS HOTAIRM1 HOXA10
GH07I027095 Promoter/Enhancer 3.4 VISTA UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 +42.1 42066 86.3 MLX FEZF1 DMAP1 YY1 ZNF213 ZNF143 SP3 NFYC SSRP1 ZNF610 HOXA2 HOXA9 HOXA10 HOXA1 HOXA3 HOXA6 HOXA4 HOXA5 HOXA7 HNRNPA2B1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HOXA10-HOXA9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HOXA10-HOXA9 Gene

Genomic Locations for HOXA10-HOXA9 Gene
chr7:27,162,438-27,180,261
(GRCh38/hg38)
Size:
17,824 bases
Orientation:
Minus strand
chr7:27,202,057-27,219,880
(GRCh37/hg19)

Genomic View for HOXA10-HOXA9 Gene

Genes around HOXA10-HOXA9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA10-HOXA9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA10-HOXA9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA10-HOXA9 Gene

Proteins for HOXA10-HOXA9 Gene

Post-translational modifications for HOXA10-HOXA9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA10-HOXA9 Gene

Domains & Families for HOXA10-HOXA9 Gene

Gene Families for HOXA10-HOXA9 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA10-HOXA9: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA10-HOXA9 Gene

Function for HOXA10-HOXA9 Gene

Phenotypes From GWAS Catalog for HOXA10-HOXA9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA10-HOXA9 Gene

Localization for HOXA10-HOXA9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HOXA10-HOXA9 Gene

Pathways & Interactions for HOXA10-HOXA9 Gene

SuperPathways for HOXA10-HOXA9 Gene

No Data Available

Interacting Proteins for HOXA10-HOXA9 Gene

Gene Ontology (GO) - Biological Process for HOXA10-HOXA9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA10-HOXA9 Gene

Drugs & Compounds for HOXA10-HOXA9 Gene

No Compound Related Data Available

Transcripts for HOXA10-HOXA9 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA10-HOXA9 Gene

No ASD Table

Relevant External Links for HOXA10-HOXA9 Gene

GeneLoc Exon Structure for
HOXA10-HOXA9

No data available for mRNA/cDNA for HOXA10-HOXA9 Gene

Expression for HOXA10-HOXA9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXA10-HOXA9 Gene

genes like me logo Genes that share expression patterns with HOXA10-HOXA9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXA10-HOXA9 Gene

Orthologs for HOXA10-HOXA9 Gene

No data available for Orthologs and Evolution for HOXA10-HOXA9 Gene

Paralogs for HOXA10-HOXA9 Gene

No data available for Paralogs for HOXA10-HOXA9 Gene

Variants for HOXA10-HOXA9 Gene

Sequence variations from dbSNP and Humsavar for HOXA10-HOXA9 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs35991882 uncertain-significance, not provided 27,163,754(-) T/G non_coding_transcript_variant
rs1000620358 -- 27,175,060(-) C/T intron_variant
rs1000868533 -- 27,172,972(-) G/T intron_variant
rs1000950303 -- 27,165,162(-) G/A intron_variant
rs1000972643 -- 27,175,463(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HOXA10-HOXA9 Gene

Variant ID Type Subtype PubMed ID
dgv1094n67 CNV gain 20364138
nsv5675 CNV insertion 18451855
nsv606465 CNV loss 21841781
nsv606468 CNV loss 21841781
nsv7393 OTHER inversion 18451855
nsv824042 CNV gain 20364138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for HOXA10-HOXA9 Gene

Disorders for HOXA10-HOXA9 Gene

Additional Disease Information for HOXA10-HOXA9

No disorders were found for HOXA10-HOXA9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA10-HOXA9 Gene

Publications for HOXA10-HOXA9 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for HOXA10-HOXA9 Gene

Sources for HOXA10-HOXA9 Gene

Content
Loading form....