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Aliases for HOXA10-AS Gene

Subcategory (RNA class) for HOXA10-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXA10-AS Gene

  • HOXA10 Antisense RNA 2 3 5
  • HOXA Cluster Antisense RNA 4 (Non-Protein Coding) 2 3
  • HOXA Cluster Antisense RNA 4 2
  • HOXA-AS4 3

External Ids for HOXA10-AS Gene

Previous HGNC Symbols for HOXA10-AS Gene

  • HOXA-AS4

Previous GeneCards Identifiers for HOXA10-AS Gene

  • GC07P027216

Summaries for HOXA10-AS Gene

GeneCards Summary for HOXA10-AS Gene

HOXA10-AS (HOXA10 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA10-AS Gene

Genomics for HOXA10-AS Gene

Regulatory Elements for HOXA10-AS Gene

Enhancers for HOXA10-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F027095 3 VISTA FANTOM5 Ensembl ENCODE 27.6 -30.4 -30424 86.3 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 HOTAIRM1 HOXA-AS2 HOXA10-AS HOXA2 HOXA9 TPM3P4 HMGB3P20 PSMC1P2 RPL23P7 HOXA11-AS
GH07F026372 2.1 ENCODE 12 -793.6 -793627 5.5 HDGF PKNOX1 ARID4B FEZF1 ZNF2 ZNF302 ZNF143 ZNF548 SP3 REST RPL23P7 TPM3P4 HMGB3P20 ENSG00000227386 HOXA10-AS HOXA9 MIR196B CBX3 HNRNPA2B1 KIAA0087
GH07F026862 1.1 ENCODE 10.7 -304.5 -304505 3.1 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 HOTAIRM1 HMGB3P20 TPM3P4 PSMC1P2 RPL23P7 HOXA-AS3 HOXA4 HOXA3 HOXA6 HOXA5
GH07F026653 1.1 Ensembl ENCODE 10.4 -514.7 -514745 0.8 PKNOX1 FEZF1 ZNF2 RFX5 SCRT2 SMARCC2 RCOR1 SMARCC1 CEBPB ZEB2 LOC105375304 HOXA10-AS HOXA9 MIR196B GC07M026655 C7orf71
GH07F027235 1.2 Ensembl ENCODE 6.5 +67.3 67312 1.8 ELF3 ZNF76 SIN3A RAD21 GLIS2 SCRT2 ZNF391 ZNF263 ZNF654 ELF1 HOXA10-AS ENSG00000253308 ENSG00000277553
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXA10-AS on UCSC Golden Path with GeneCards custom track

Promoters for HOXA10-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001890138 -1319 601 RNF2 SUZ12 CBX2 FEZF1 GLIS2 BCL11A ZNF366 PATZ1 ZNF341 CTBP2

Genomic Location for HOXA10-AS Gene

Chromosome:
7
Start:
27,168,619 bp from pter
End:
27,171,915 bp from pter
Size:
3,297 bases
Orientation:
Plus strand

Genomic View for HOXA10-AS Gene

Genes around HOXA10-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA10-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA10-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA10-AS Gene

Proteins for HOXA10-AS Gene

Post-translational modifications for HOXA10-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA10-AS Gene

Domains & Families for HOXA10-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA10-AS Gene

Function for HOXA10-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA10-AS Gene

Localization for HOXA10-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA10-AS Gene

Pathways & Interactions for HOXA10-AS Gene

SuperPathways for HOXA10-AS Gene

No Data Available

Interacting Proteins for HOXA10-AS Gene

Gene Ontology (GO) - Biological Process for HOXA10-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA10-AS Gene

Transcripts for HOXA10-AS Gene

mRNA/cDNA for HOXA10-AS Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA10-AS Gene

No ASD Table

Relevant External Links for HOXA10-AS Gene

GeneLoc Exon Structure for
HOXA10-AS
ECgene alternative splicing isoforms for
HOXA10-AS

Expression for HOXA10-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXA10-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXA10-AS Gene

This gene is overexpressed in Uterus (x7.0) and Muscle - Skeletal (x5.5).
genes like me logo Genes that share expression patterns with HOXA10-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXA10-AS Gene

Orthologs for HOXA10-AS Gene

Evolution for HOXA10-AS Gene

ENSEMBL:
Gene Tree for HOXA10-AS (if available)
TreeFam:
Gene Tree for HOXA10-AS (if available)

No data available for Orthologs for HOXA10-AS Gene

Paralogs for HOXA10-AS Gene

No data available for Paralogs for HOXA10-AS Gene

Variants for HOXA10-AS Gene

Sequence variations from dbSNP and Humsavar for HOXA10-AS Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1064032 -- 27,169,583(-) GCAGC(C/G)CTTCG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1064033 -- 27,169,439(-) GGCCG(C/G)GCGGG intron-variant, nc-transcript-variant, downstream-variant-500B
rs111242660 -- 27,169,781(+) AGGGA(C/G)AGGGA intron-variant, upstream-variant-2KB
rs116368193 -- 27,168,078(+) GCACG(A/C)ATCTG intron-variant, upstream-variant-2KB
rs116681061 -- 27,171,113(+) ATTAT(C/T)TATCT intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for HOXA10-AS Gene

Variant ID Type Subtype PubMed ID
nsv824042 CNV gain 20364138
nsv7393 OTHER inversion 18451855
nsv606468 CNV loss 21841781
nsv606465 CNV loss 21841781
dgv1094n67 CNV gain 20364138

Relevant External Links for HOXA10-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXA10-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXA10-AS Gene

Disorders for HOXA10-AS Gene

Relevant External Links for HOXA10-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA10-AS

No disorders were found for HOXA10-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA10-AS Gene

Publications for HOXA10-AS Gene

No publications were found for HOXA10-AS Gene.

Products for HOXA10-AS Gene

Sources for HOXA10-AS Gene

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