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Aliases for HOXA10-AS Gene

Subcategory (RNA class) for HOXA10-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXA10-AS Gene

  • HOXA10 Antisense RNA 2 3 5
  • HOXA Cluster Antisense RNA 4 (Non-Protein Coding) 2 3
  • HOXA Cluster Antisense RNA 4 2
  • HOXA-AS4 3

External Ids for HOXA10-AS Gene

Previous HGNC Symbols for HOXA10-AS Gene

  • HOXA-AS4

Previous GeneCards Identifiers for HOXA10-AS Gene

  • GC07P027216

Summaries for HOXA10-AS Gene

GeneCards Summary for HOXA10-AS Gene

HOXA10-AS (HOXA10 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA10-AS Gene

Genomics for HOXA10-AS Gene

Regulatory Elements for HOXA10-AS Gene

Enhancers for HOXA10-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G027095 3.3 VISTA FANTOM5 Ensembl ENCODE dbSUPER 27.6 -30.4 -30424 86.3 MLX ZFP64 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 HOTAIRM1 HOXA10-AS HOXA2 HOXA-AS2 HOXA9 HOXA11-AS HOXA10 HOXA11 EIF4HP1 SKAP2
GH07G026372 2.1 ENCODE 12 -793.6 -793627 5.5 HDGF PKNOX1 ARID4B FEZF1 ZNF2 ZNF302 ZNF143 ZNF548 SP3 REST HOXA10-AS HOXA9 HNRNPA2B1 CBX3 KIAA0087 C7orf71 SNX10 LOC105375304 LOC441204
GH07G026862 1.4 ENCODE dbSUPER 10.7 -304.5 -304505 3.1 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 HOTAIRM1 HOXA-AS3 HOXA4 HOXA3 HOXA6 HOXA5 HOXA1 HOXA2 HOXA10-AS HOXA9
GH07G027181 1.5 Ensembl ENCODE dbSUPER 7.2 +15.7 15701 5.1 HDGF PKNOX1 FEZF1 ZNF2 GLIS2 ELK1 FOS KLF7 SMARCB1 ZNF623 HOXA11-AS HOXA10-AS HOTAIRM1 HOXA10-HOXA9 HOXA10
GH07G027199 1.2 ENCODE dbSUPER 8.3 +31.9 31916 1.2 INSM2 ZNF76 KLF17 SIN3A GLI4 ZNF2 ZEB1 GLIS2 ZNF366 PCBP1 HOXA10-AS ENSG00000278708 ENSG00000276609
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXA10-AS on UCSC Golden Path with GeneCards custom track

Promoters for HOXA10-AS Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000325323 481 201 ZNF473 ZSCAN4 ZNF76 GLI4 ZNF2 ZEB1 GLIS2 GATA2 ZNF366 ZNF391
ENSR00000325322 1181 801 KLF17 ZEB1 GLIS2 ZNF366 SCRT2 CEBPB OVOL3 ZEB2 ZNF398 ZFP69B

Genomic Location for HOXA10-AS Gene

Chromosome:
7
Start:
27,168,619 bp from pter
End:
27,171,915 bp from pter
Size:
3,297 bases
Orientation:
Plus strand

Genomic View for HOXA10-AS Gene

Genes around HOXA10-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA10-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA10-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA10-AS Gene

Proteins for HOXA10-AS Gene

Post-translational modifications for HOXA10-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA10-AS Gene

Domains & Families for HOXA10-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA10-AS Gene

Function for HOXA10-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA10-AS Gene

Localization for HOXA10-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA10-AS Gene

Pathways & Interactions for HOXA10-AS Gene

SuperPathways for HOXA10-AS Gene

No Data Available

Interacting Proteins for HOXA10-AS Gene

Gene Ontology (GO) - Biological Process for HOXA10-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA10-AS Gene

Drugs & Compounds for HOXA10-AS Gene

No Compound Related Data Available

Transcripts for HOXA10-AS Gene

mRNA/cDNA for HOXA10-AS Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA10-AS Gene

No ASD Table

Relevant External Links for HOXA10-AS Gene

GeneLoc Exon Structure for
HOXA10-AS
ECgene alternative splicing isoforms for
HOXA10-AS

Expression for HOXA10-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXA10-AS Gene

mRNA differential expression in normal tissues according to GTEx for HOXA10-AS Gene

This gene is overexpressed in Uterus (x7.0) and Muscle - Skeletal (x5.5).
genes like me logo Genes that share expression patterns with HOXA10-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXA10-AS Gene

Orthologs for HOXA10-AS Gene

Evolution for HOXA10-AS Gene

ENSEMBL:
Gene Tree for HOXA10-AS (if available)
TreeFam:
Gene Tree for HOXA10-AS (if available)

No data available for Orthologs for HOXA10-AS Gene

Paralogs for HOXA10-AS Gene

No data available for Paralogs for HOXA10-AS Gene

Variants for HOXA10-AS Gene

Sequence variations from dbSNP and Humsavar for HOXA10-AS Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000999605 -- 27,167,615(+) CTGAT(C/T)ATTTC intron-variant, upstream-variant-2KB
rs1001052090 -- 27,167,291(+) GCCGC(A/G)CGGAT intron-variant, upstream-variant-2KB
rs1001088460 -- 27,170,069(+) CCCCG(-/C)CCCCC intron-variant, upstream-variant-2KB
rs1002835168 -- 27,170,176(+) CGGGT(C/G)CACCT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1003230290 -- 27,168,846(+) ATGAA(A/T)AAAAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXA10-AS Gene

Variant ID Type Subtype PubMed ID
dgv1094n67 CNV gain 20364138
nsv606465 CNV loss 21841781
nsv606468 CNV loss 21841781
nsv7393 OTHER inversion 18451855
nsv824042 CNV gain 20364138

Relevant External Links for HOXA10-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXA10-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXA10-AS Gene

Disorders for HOXA10-AS Gene

Relevant External Links for HOXA10-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA10-AS

No disorders were found for HOXA10-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA10-AS Gene

Publications for HOXA10-AS Gene

No publications were found for HOXA10-AS Gene.

Products for HOXA10-AS Gene

Sources for HOXA10-AS Gene

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