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Aliases for HOXA-AS3 Gene

Subcategory (RNA class) for HOXA-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXA-AS3 Gene

  • HOXA Cluster Antisense RNA 3 2 3 5
  • HOXA Cluster Antisense RNA 3 (Non-Protein Coding) 2 3
  • HOXA6as 3

External Ids for HOXA-AS3 Gene

Previous GeneCards Identifiers for HOXA-AS3 Gene

  • GC07P027173

Summaries for HOXA-AS3 Gene

GeneCards Summary for HOXA-AS3 Gene

HOXA-AS3 (HOXA Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA-AS3 Gene

Genomics for HOXA-AS3 Gene

Regulatory Elements for HOXA-AS3 Gene

Enhancers for HOXA-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F026862 1.1 ENCODE 11.8 -265.9 -265863 3.1 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 HOTAIRM1 HMGB3P20 TPM3P4 PSMC1P2 RPL23P7 HOXA-AS3 HOXA4 HOXA3 HOXA6 HOXA5
GH07F026855 0.9 ENCODE 12.2 -272.4 -272430 4.8 HDAC1 PKNOX1 FEZF1 ZBTB40 GLIS2 GATA2 ZNF366 EGR2 ZNF362 ZEB2 HOTAIRM1 HOXA5 HOXA-AS2 HOXA3 HOXA-AS3 HOXA4 HOXA6 HOXA1 HOXA2 SKAP2
GH07F026860 0.9 Ensembl ENCODE 11.8 -269.0 -268977 1.2 ELF3 CTCF ZNF362 PKNOX1 ZNF654 RNF2 ZNF384 RAD21 JUND SMC3 HOXA-AS3 HOXA4 HOXA5 HOXA6 HOXA3 HOTAIRM1 HOXA1 HOXA2 HOXA-AS2 SKAP2
GH07F026853 0.6 ENCODE 12 -276.0 -276001 0.2 CTCF ZNF654 CHD1 SMC3 RAD21 SP7 HOXA5 HOXA3 HOXA6 HOXA-AS3 HOXA4 HOTAIRM1 HOXA1 GC07P026846 RPL7AP38
GH07F027388 0.2 ENCODE 4.7 +259.5 259496 1.3 HOXA-AS3 LOC105375206 ENSG00000279429
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXA-AS3 on UCSC Golden Path with GeneCards custom track

Promoters for HOXA-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000623608 523 2201 PKNOX1 MLX ARID4B SIN3A FEZF1 ZNF2 FOS SP3 SP5 NFYC

Genomic Location for HOXA-AS3 Gene

Chromosome:
7
Start:
27,129,977 bp from pter
End:
27,155,928 bp from pter
Size:
25,952 bases
Orientation:
Plus strand

Genomic View for HOXA-AS3 Gene

Genes around HOXA-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA-AS3 Gene

Proteins for HOXA-AS3 Gene

Post-translational modifications for HOXA-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA-AS3 Gene

Domains & Families for HOXA-AS3 Gene

Gene Families for HOXA-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA-AS3 Gene

Function for HOXA-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA-AS3 Gene

Localization for HOXA-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA-AS3 Gene

Pathways & Interactions for HOXA-AS3 Gene

SuperPathways for HOXA-AS3 Gene

No Data Available

Interacting Proteins for HOXA-AS3 Gene

Gene Ontology (GO) - Biological Process for HOXA-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA-AS3 Gene

Transcripts for HOXA-AS3 Gene

mRNA/cDNA for HOXA-AS3 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA-AS3 Gene

No ASD Table

Relevant External Links for HOXA-AS3 Gene

GeneLoc Exon Structure for
HOXA-AS3
ECgene alternative splicing isoforms for
HOXA-AS3

Expression for HOXA-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXA-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXA-AS3 Gene

This gene is overexpressed in Fallopian Tube (x4.6) and Adrenal Gland (x4.1).
genes like me logo Genes that share expression patterns with HOXA-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXA-AS3 Gene

Orthologs for HOXA-AS3 Gene

Evolution for HOXA-AS3 Gene

ENSEMBL:
Gene Tree for HOXA-AS3 (if available)
TreeFam:
Gene Tree for HOXA-AS3 (if available)

No data available for Orthologs for HOXA-AS3 Gene

Paralogs for HOXA-AS3 Gene

No data available for Paralogs for HOXA-AS3 Gene

Variants for HOXA-AS3 Gene

Sequence variations from dbSNP and Humsavar for HOXA-AS3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10155970 -- 27,142,592(+) GCAGG(A/C)TCTCG intron-variant
rs10256787 -- 27,149,382(+) CGGTT(C/T)AGGAC intron-variant, upstream-variant-2KB
rs1047218 -- 27,143,383(-) GCTGC(A/C)AGCGC intron-variant, reference, synonymous-codon
rs1047290 -- 27,141,797(-) AGCGG(A/T)TCCCG intron-variant, utr-variant-3-prime
rs1047294 -- 27,141,543(-) aaaaa(A/G)aaaaa intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for HOXA-AS3 Gene

Variant ID Type Subtype PubMed ID
nsv824042 CNV gain 20364138
nsv7393 OTHER inversion 18451855
nsv606465 CNV loss 21841781
nsv5674 CNV deletion 18451855
nsv526526 CNV loss 19592680
dgv11244n54 CNV loss 21841781
dgv1094n67 CNV gain 20364138

Relevant External Links for HOXA-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXA-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXA-AS3 Gene

Disorders for HOXA-AS3 Gene

Relevant External Links for HOXA-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA-AS3

No disorders were found for HOXA-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA-AS3 Gene

Publications for HOXA-AS3 Gene

  1. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for HOXA-AS3 Gene

Sources for HOXA-AS3 Gene

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