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Aliases for HOXA-AS3 Gene

Subcategory (RNA class) for HOXA-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOXA-AS3 Gene

  • HOXA Cluster Antisense RNA 3 2 3 5
  • HOXA Cluster Antisense RNA 3 (Non-Protein Coding) 2 3
  • HOXA6as 3

External Ids for HOXA-AS3 Gene

Previous GeneCards Identifiers for HOXA-AS3 Gene

  • GC07P027173

Summaries for HOXA-AS3 Gene

GeneCards Summary for HOXA-AS3 Gene

HOXA-AS3 (HOXA Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA-AS3 Gene

Genomics for HOXA-AS3 Gene

Regulatory Elements for HOXA-AS3 Gene

Enhancers for HOXA-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around HOXA-AS3 on UCSC Golden Path with GeneCards custom track

Promoters for HOXA-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for HOXA-AS3 Gene

27,129,977 bp from pter
27,155,928 bp from pter
25,952 bases
Plus strand

Genomic View for HOXA-AS3 Gene

Genes around HOXA-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA-AS3 Gene

Proteins for HOXA-AS3 Gene

Post-translational modifications for HOXA-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA-AS3 Gene

Domains & Families for HOXA-AS3 Gene

Gene Families for HOXA-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA-AS3 Gene

Function for HOXA-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA-AS3 Gene

Localization for HOXA-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA-AS3 Gene

Pathways & Interactions for HOXA-AS3 Gene

SuperPathways for HOXA-AS3 Gene

No Data Available

Interacting Proteins for HOXA-AS3 Gene

Gene Ontology (GO) - Biological Process for HOXA-AS3 Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXA-AS3 Gene

Drugs & Compounds for HOXA-AS3 Gene

No Compound Related Data Available

Transcripts for HOXA-AS3 Gene

mRNA/cDNA for HOXA-AS3 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA-AS3 Gene

No ASD Table

Relevant External Links for HOXA-AS3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXA-AS3 Gene

mRNA expression in normal human tissues for HOXA-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXA-AS3 Gene

This gene is overexpressed in Fallopian Tube (x4.6) and Adrenal Gland (x4.1).
genes like me logo Genes that share expression patterns with HOXA-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXA-AS3 Gene

Orthologs for HOXA-AS3 Gene

Evolution for HOXA-AS3 Gene

Gene Tree for HOXA-AS3 (if available)
Gene Tree for HOXA-AS3 (if available)

No data available for Orthologs for HOXA-AS3 Gene

Paralogs for HOXA-AS3 Gene

No data available for Paralogs for HOXA-AS3 Gene

Variants for HOXA-AS3 Gene

Structural Variations from Database of Genomic Variants (DGV) for HOXA-AS3 Gene

Variant ID Type Subtype PubMed ID
dgv1094n67 CNV gain 20364138
dgv11244n54 CNV loss 21841781
nsv526526 CNV loss 19592680
nsv5674 CNV deletion 18451855
nsv606465 CNV loss 21841781
nsv7393 OTHER inversion 18451855
nsv824042 CNV gain 20364138

Relevant External Links for HOXA-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for HOXA-AS3 Gene

Disorders for HOXA-AS3 Gene

Relevant External Links for HOXA-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HOXA-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA-AS3 Gene

Publications for HOXA-AS3 Gene

  1. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3 65
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65

Products for HOXA-AS3 Gene

Sources for HOXA-AS3 Gene

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