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HOXA-AS3 Gene(RNA Gene)

HOXA Cluster Antisense RNA 3

GCID:
GC07P027129
GIFtS:
16
Genes Participants
UDN Logo

Aliases for HOXA-AS3 Gene

Subcategory (RNA class) for HOXA-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXA-AS3 Gene

  • HOXA Cluster Antisense RNA 3 2 3 5
  • HOXA Cluster Antisense RNA 3 (Non-Protein Coding) 2 3
  • HOXA6as 3

External Ids for HOXA-AS3 Gene

Previous GeneCards Identifiers for HOXA-AS3 Gene

  • GC07P027173

Summaries for HOXA-AS3 Gene

GeneCards Summary for HOXA-AS3 Gene

HOXA-AS3 (HOXA Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA-AS3 Gene

Genomics for HOXA-AS3 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HOXA-AS3 Gene

Enhancers for HOXA-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G026855 1.4 Ensembl ENCODE dbSUPER 12.2 -272.4 -272430 4.8 HDAC1 PKNOX1 NFIB FEZF1 ZBTB40 TCF12 GLIS2 GATA2 EGR1 ZNF366 HOTAIRM1 HOXA5 HOXA-AS3 HOXA4 HOXA3 HOXA6 HOXA1 HOXA2 HOXA-AS2 SKAP2
GH07G026862 1.4 ENCODE dbSUPER 11.8 -265.9 -265863 3.1 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 HOTAIRM1 HOXA-AS3 HOXA4 HOXA3 HOXA6 HOXA5 HOXA1 HOXA2 HOXA10-AS HOXA9
GH07G026853 0.9 ENCODE dbSUPER 12 -276.0 -276001 0.2 CTCF ZNF654 ZSCAN4 CHD1 BMI1 RAD21 PRDM6 SMC3 REPIN1 SP7 HOXA5 HOXA3 HOXA6 HOXA-AS3 HOXA4 HOTAIRM1 HOXA1 GC07P026846 RPL7AP38
GH07G026860 0.9 ENCODE dbSUPER 11.8 -269.4 -269441 0.2 ELF3 CTCF ZNF654 JUND SMC3 RAD21 MIXL1 EZH2 HOXA-AS3 HOXA4 HOXA5 HOXA3 HOXA6 HOTAIRM1 HOXA1 HOXA2 HOXA-AS2 GC07P026846
GH07G027388 0.2 ENCODE 4.7 +259.5 259496 1.3 HOXA-AS3 LOC105375206 ENSG00000279429
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXA-AS3 on UCSC Golden Path with GeneCards custom track

Promoters for HOXA-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000209832 -277 201 PKNOX1 GLI4 FEZF1 ZNF2 GLIS2 KLF7 SP3 ZNF488 REST ZNF623
ENSR00000325314 723 1401 HDGF PKNOX1 MLX ARNT ARID4B SIN3A FEZF1 ZNF48 GLIS2 FOS

Genomic Location for HOXA-AS3 Gene

Chromosome:
7
Start:
27,129,977 bp from pter
End:
27,155,928 bp from pter
Size:
25,952 bases
Orientation:
Plus strand

Genomic View for HOXA-AS3 Gene

Genes around HOXA-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA-AS3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HOXA-AS3 Gene

Proteins for HOXA-AS3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HOXA-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA-AS3 Gene

Domains & Families for HOXA-AS3 Gene

Gene Families for HOXA-AS3 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA-AS3 Gene

Function for HOXA-AS3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA-AS3 Gene

Localization for HOXA-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA-AS3 Gene

Pathways & Interactions for HOXA-AS3 Gene

SuperPathways for HOXA-AS3 Gene

PathCards logo More details on SuperPathways for HOXA-AS3
No Data Available

Interacting Proteins for HOXA-AS3 Gene

Gene Ontology (GO) - Biological Process for HOXA-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA-AS3 Gene

Drugs & Compounds for HOXA-AS3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HOXA-AS3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HOXA-AS3 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA-AS3 Gene

No ASD Table

Relevant External Links for HOXA-AS3 Gene

GeneLoc Exon Structure for
HOXA-AS3
ECgene alternative splicing isoforms for
HOXA-AS3

Expression for HOXA-AS3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HOXA-AS3 Gene

mRNA expression in normal human tissues for HOXA-AS3 Gene
mRNA expression by GTEx for HOXA-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXA-AS3 Gene

This gene is overexpressed in Fallopian Tube (x4.6) and Adrenal Gland (x4.1).
genes like me logo Genes that share expression patterns with HOXA-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HOXA-AS3 Gene

Orthologs for HOXA-AS3 Gene

Evolution for HOXA-AS3 Gene

ENSEMBL:
Gene Tree for HOXA-AS3 (if available)
TreeFam:
Gene Tree for HOXA-AS3 (if available)

No data available for Orthologs for HOXA-AS3 Gene

Paralogs for HOXA-AS3 Gene

No data available for Paralogs for HOXA-AS3 Gene

Variants for HOXA-AS3 Gene

Sequence variations from dbSNP and Humsavar for HOXA-AS3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000079925 -- 27,150,131(+) GGCTA(C/G)TGCAT intron-variant
rs1000241812 -- 27,147,143(+) AGCCC(C/G)ATTGG intron-variant, upstream-variant-2KB
rs1000312377 -- 27,145,740(+) TCATG(C/T)GGCGG intron-variant, upstream-variant-2KB, reference, missense
rs1000360737 -- 27,156,224(+) CAGCG(A/C)GCCCT downstream-variant-500B, reference, missense
rs1000446074 -- 27,152,626(+) TGTTC(A/G)CGGTT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXA-AS3 Gene

Variant ID Type Subtype PubMed ID
dgv1094n67 CNV gain 20364138
dgv11244n54 CNV loss 21841781
nsv526526 CNV loss 19592680
nsv5674 CNV deletion 18451855
nsv606465 CNV loss 21841781
nsv7393 OTHER inversion 18451855
nsv824042 CNV gain 20364138

Relevant External Links for HOXA-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXA-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXA-AS3 Gene

Disorders for HOXA-AS3 Gene

Relevant External Links for HOXA-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA-AS3

No disorders were found for HOXA-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA-AS3 Gene

Publications for HOXA-AS3 Gene

  1. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for HOXA-AS3 Gene

Sources for HOXA-AS3 Gene

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