Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HOXA-AS3 Gene

Subcategory (RNA class) for HOXA-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOXA-AS3 Gene

  • HOXA Cluster Antisense RNA 3 2 3
  • HOXA Cluster Antisense RNA 3 (Non-Protein Coding) 2 3
  • HOXA6as 3

External Ids for HOXA-AS3 Gene

Previous GeneCards Identifiers for HOXA-AS3 Gene

  • GC07P027173

Summaries for HOXA-AS3 Gene

GeneCards Summary for HOXA-AS3 Gene

HOXA-AS3 (HOXA Cluster Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA-AS3 Gene

Genomics for HOXA-AS3 Gene

Genomic Location for HOXA-AS3 Gene

27,129,977 bp from pter
27,155,928 bp from pter
25,952 bases
Plus strand

Genomic View for HOXA-AS3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOXA-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA-AS3 Gene

No data available for Regulatory Elements for HOXA-AS3 Gene

Proteins for HOXA-AS3 Gene

Post-translational modifications for HOXA-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA-AS3 Gene

Domains & Families for HOXA-AS3 Gene

Gene Families for HOXA-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA-AS3 Gene

Function for HOXA-AS3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA-AS3 Gene

Localization for HOXA-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA-AS3 Gene

Pathways & Interactions for HOXA-AS3 Gene

SuperPathways for HOXA-AS3 Gene

No Data Available

Interacting Proteins for HOXA-AS3 Gene

Gene Ontology (GO) - Biological Process for HOXA-AS3 Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXA-AS3 Gene

Drugs & Compounds for HOXA-AS3 Gene

No Compound Related Data Available

Transcripts for HOXA-AS3 Gene

mRNA/cDNA for HOXA-AS3 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA-AS3 Gene

No ASD Table

Relevant External Links for HOXA-AS3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXA-AS3 Gene

mRNA expression in normal human tissues for HOXA-AS3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXA-AS3 Gene

This gene is overexpressed in Fallopian Tube (x4.6) and Adrenal Gland (x4.1).
genes like me logo Genes that share expression patterns with HOXA-AS3: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HOXA-AS3 Gene

Orthologs for HOXA-AS3 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for HOXA-AS3 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia 2700086A05Rik 16
Species with no ortholog for HOXA-AS3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HOXA-AS3 Gene

Gene Tree for HOXA-AS3 (if available)
Gene Tree for HOXA-AS3 (if available)

Paralogs for HOXA-AS3 Gene

No data available for Paralogs for HOXA-AS3 Gene

Variants for HOXA-AS3 Gene

Relevant External Links for HOXA-AS3 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXA-AS3 Gene

Disorders for HOXA-AS3 Gene

Relevant External Links for HOXA-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with HOXA-AS3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA-AS3 Gene

Publications for HOXA-AS3 Gene

  1. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67

Products for HOXA-AS3 Gene

Sources for HOXA-AS3 Gene

Back to Top