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Aliases for HOXA-AS2 Gene

Subcategory (RNA class) for HOXA-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HOXA-AS2 Gene

  • HOXA Cluster Antisense RNA 2 2 3 5
  • HOXA Cluster Antisense RNA 2 (Non-Protein Coding) 2 3
  • HOXA3as 3

External Ids for HOXA-AS2 Gene

Previous GeneCards Identifiers for HOXA-AS2 Gene

  • GC07P027151

Summaries for HOXA-AS2 Gene

GeneCards Summary for HOXA-AS2 Gene

HOXA-AS2 (HOXA Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA-AS2 Gene

Genomics for HOXA-AS2 Gene

Regulatory Elements for HOXA-AS2 Gene

Enhancers for HOXA-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F027095 3 VISTA FANTOM5 Ensembl ENCODE 29.5 +30.4 30419 86.3 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 HOTAIRM1 HOXA-AS2 HOXA10-AS HOXA2 HOXA9 TPM3P4 HMGB3P20 PSMC1P2 RPL23P7 HOXA11-AS
GH07F026855 0.9 ENCODE 21.1 -250.2 -250230 4.8 HDAC1 PKNOX1 FEZF1 ZBTB40 GLIS2 GATA2 ZNF366 EGR2 ZNF362 ZEB2 HOTAIRM1 HOXA5 HOXA-AS2 HOXA3 HOXA-AS3 HOXA4 HOXA6 HOXA1 HOXA2 SKAP2
GH07F026151 1.7 FANTOM5 Ensembl ENCODE 10 -951.7 -951717 9.7 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A DMAP1 ZNF2 YY1 ZNF766 HNRNPA2B1 SNX10 CBX3 C7orf31 HOXA-AS2 HOXA5 LOC105375304 LOC105375201 NFE2L3 GC07P026176
GH07F027030 1.2 Ensembl ENCODE 10.4 -76.2 -76230 2.1 HDAC1 ATF1 PKNOX1 TBL1XR1 FEZF1 ZNF766 GATA2 ZBTB11 CEBPB ZNF589 HOTAIRM1 SKAP2 HOXA1 HOXA2 HOXA-AS2 HOXA3 TPM3P4 NHP2P2
GH07F026195 1.2 ENCODE 10 -907.0 -907031 10.0 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 HOXA-AS2 HOXA5 LOC105375201 CBX3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HOXA-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for HOXA-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000623596 -277 2201 ZNF133 NFRKB ZNF76 ZNF2 ZNF335 GLIS2 ZNF366 KLF7 ZNF391 EGR2

Genomic Location for HOXA-AS2 Gene

Chromosome:
7
Start:
27,107,777 bp from pter
End:
27,134,302 bp from pter
Size:
26,526 bases
Orientation:
Plus strand

Genomic View for HOXA-AS2 Gene

Genes around HOXA-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA-AS2 Gene

Proteins for HOXA-AS2 Gene

Post-translational modifications for HOXA-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA-AS2 Gene

Domains & Families for HOXA-AS2 Gene

Gene Families for HOXA-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA-AS2 Gene

Function for HOXA-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA-AS2 Gene

Localization for HOXA-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA-AS2 Gene

Pathways & Interactions for HOXA-AS2 Gene

SuperPathways for HOXA-AS2 Gene

No Data Available

Interacting Proteins for HOXA-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXA-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HOXA-AS2 Gene

Transcripts for HOXA-AS2 Gene

mRNA/cDNA for HOXA-AS2 Gene

(7) Additional mRNA sequences :
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXA-AS2 Gene

HOXA cluster antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA-AS2 Gene

No ASD Table

Relevant External Links for HOXA-AS2 Gene

GeneLoc Exon Structure for
HOXA-AS2
ECgene alternative splicing isoforms for
HOXA-AS2

Expression for HOXA-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HOXA-AS2 Gene

SOURCE GeneReport for Unigene cluster for HOXA-AS2 Gene:

Hs.714774
genes like me logo Genes that share expression patterns with HOXA-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HOXA-AS2 Gene

Orthologs for HOXA-AS2 Gene

Evolution for HOXA-AS2 Gene

ENSEMBL:
Gene Tree for HOXA-AS2 (if available)
TreeFam:
Gene Tree for HOXA-AS2 (if available)

No data available for Orthologs for HOXA-AS2 Gene

Paralogs for HOXA-AS2 Gene

No data available for Paralogs for HOXA-AS2 Gene

Variants for HOXA-AS2 Gene

Sequence variations from dbSNP and Humsavar for HOXA-AS2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10624330 -- 27,126,966(+) GGCAT(-/T/TT)TTTTT intron-variant, utr-variant-5-prime
rs10665681 -- 27,121,262(+) TGTGT(-/GT/GTGT)ATGAT intron-variant, upstream-variant-2KB
rs111256830 -- 27,129,104(+) TCACC(A/G)ATTTG intron-variant, downstream-variant-500B, utr-variant-3-prime
rs112485946 -- 27,126,442(+) TGCTT(-/A)AAAAA intron-variant, utr-variant-5-prime
rs112622479 -- 27,120,271(+) GGTGC(A/G)GTGGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HOXA-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv1094n67 CNV gain 20364138
dgv11244n54 CNV loss 21841781
nsv5674 CNV deletion 18451855
nsv606464 CNV loss 21841781
nsv606465 CNV loss 21841781
nsv7393 OTHER inversion 18451855

Relevant External Links for HOXA-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HOXA-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HOXA-AS2 Gene

Disorders for HOXA-AS2 Gene

Relevant External Links for HOXA-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA-AS2

No disorders were found for HOXA-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA-AS2 Gene

Publications for HOXA-AS2 Gene

  1. HOX antisense lincRNA HOXA-AS2 is an apoptosis repressor in all trans retinoic acid treated NB4 promyelocytic leukemia cells. (PMID: 23649634) Zhao H. … Newburger P.E. (J. Cell. Biochem. 2013) 2 3 64
  2. Long noncoding RNA HOXA-AS2 promotes gastric cancer proliferation by epigenetically silencing P21/PLK3/DDIT3 expression. (PMID: 26384350) Xie M. … De W. (Oncotarget 2015) 3 64
  3. Genome-wide association analyses identify variants in developmental genes associated with hypospadias. (PMID: 25108383) Geller F. … Melbye M. (Nat. Genet. 2014) 3 64
  4. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for HOXA-AS2 Gene

Sources for HOXA-AS2 Gene

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