Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HOXA-AS2 Gene

Subcategory (RNA class) for HOXA-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOXA-AS2 Gene

  • HOXA Cluster Antisense RNA 2 2 3 5
  • HOXA Cluster Antisense RNA 2 (Non-Protein Coding) 2 3
  • HOXA3as 3

External Ids for HOXA-AS2 Gene

Previous GeneCards Identifiers for HOXA-AS2 Gene

  • GC07P027151

Summaries for HOXA-AS2 Gene

GeneCards Summary for HOXA-AS2 Gene

HOXA-AS2 (HOXA Cluster Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA-AS2 Gene

Genomics for HOXA-AS2 Gene

Regulatory Elements for HOXA-AS2 Gene

Enhancers for HOXA-AS2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HOXA-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for HOXA-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HOXA-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for HOXA-AS2 Gene

27,107,777 bp from pter
27,134,302 bp from pter
26,526 bases
Plus strand

Genomic View for HOXA-AS2 Gene

Genes around HOXA-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOXA-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOXA-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA-AS2 Gene

Proteins for HOXA-AS2 Gene

Post-translational modifications for HOXA-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOXA-AS2 Gene

Domains & Families for HOXA-AS2 Gene

Gene Families for HOXA-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOXA-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOXA-AS2 Gene

Function for HOXA-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOXA-AS2 Gene

Localization for HOXA-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOXA-AS2 Gene

Pathways & Interactions for HOXA-AS2 Gene

SuperPathways for HOXA-AS2 Gene

No Data Available

Interacting Proteins for HOXA-AS2 Gene

Gene Ontology (GO) - Biological Process for HOXA-AS2 Gene


No data available for Pathways by source and SIGNOR curated interactions for HOXA-AS2 Gene

Drugs & Compounds for HOXA-AS2 Gene

No Compound Related Data Available

Transcripts for HOXA-AS2 Gene

mRNA/cDNA for HOXA-AS2 Gene

(7) Additional mRNA sequences :
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOXA-AS2 Gene

HOXA cluster antisense RNA 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA-AS2 Gene

No ASD Table

Relevant External Links for HOXA-AS2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOXA-AS2 Gene

mRNA expression in normal human tissues for HOXA-AS2 Gene

SOURCE GeneReport for Unigene cluster for HOXA-AS2 Gene Hs.714774

genes like me logo Genes that share expression patterns with HOXA-AS2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HOXA-AS2 Gene

Orthologs for HOXA-AS2 Gene

Evolution for HOXA-AS2 Gene

Gene Tree for HOXA-AS2 (if available)
Gene Tree for HOXA-AS2 (if available)

No data available for Orthologs for HOXA-AS2 Gene

Paralogs for HOXA-AS2 Gene

No data available for Paralogs for HOXA-AS2 Gene

Variants for HOXA-AS2 Gene

Relevant External Links for HOXA-AS2 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HOXA-AS2 Gene

Disorders for HOXA-AS2 Gene

Relevant External Links for HOXA-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HOXA-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOXA-AS2 Gene

Publications for HOXA-AS2 Gene

  1. HOX antisense lincRNA HOXA-AS2 is an apoptosis repressor in all trans retinoic acid treated NB4 promyelocytic leukemia cells. (PMID: 23649634) Zhao H. … Newburger P.E. (J. Cell. Biochem. 2013) 2 3 67
  2. Long noncoding RNA HOXA-AS2 promotes gastric cancer proliferation by epigenetically silencing P21/PLK3/DDIT3 expression. (PMID: 26384350) Xie M. … De W. (Oncotarget 2015) 3
  3. Genome-wide association analyses identify variants in developmental genes associated with hypospadias. (PMID: 25108383) Geller F. … Melbye M. (Nat. Genet. 2014) 3
  4. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for HOXA-AS2 Gene

Sources for HOXA-AS2 Gene