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Aliases for HOTTIP Gene

Subcategory (RNA class) for HOTTIP Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HOTTIP Gene

  • HOXA Distal Transcript Antisense RNA 2 3
  • HOXA Distal Transcript Antisense RNA (Non-Protein Coding) 2 3
  • HOXA Cluster Antisense RNA 6 (Non-Protein Coding) 2 3
  • HOXA13 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NCRNA00213 3 6
  • HOXA Transcript At The Distal Tip 2
  • HoxA Transcript At The Distal Tip 3
  • Non-Protein Coding RNA 213 2
  • HOXA13-AS1 3
  • HOXA-AS6 3

External Ids for HOTTIP Gene

Previous Symbols for HOTTIP Gene

  • NCRNA00213

Summaries for HOTTIP Gene

GeneCards Summary for HOTTIP Gene

HOTTIP (HOXA Distal Transcript Antisense RNA) is an RNA Gene, and belongs to the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOTTIP Gene

Genomics for HOTTIP Gene

Genomic Location for HOTTIP Gene

Start:
27,198,575 bp from pter
End:
27,207,259 bp from pter
Size:
8,685 bases
Orientation:
Plus strand

Genomic View for HOTTIP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOTTIP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOTTIP Gene

No data available for Regulatory Elements for HOTTIP Gene

Proteins for HOTTIP Gene

Post-translational modifications for HOTTIP Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOTTIP Gene

Domains for HOTTIP Gene

Gene Families for HOTTIP Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOTTIP: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOTTIP Gene

Function for HOTTIP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HOTTIP Gene

Localization for HOTTIP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOTTIP Gene

Pathways for HOTTIP Gene

SuperPathways for HOTTIP Gene

No Data Available

Interacting Proteins for HOTTIP Gene

Gene Ontology (GO) - Biological Process for HOTTIP Gene

None

No data available for Pathways by source for HOTTIP Gene

Transcripts for HOTTIP Gene

mRNA/cDNA for HOTTIP Gene

(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOTTIP Gene

HOXA distal transcript antisense RNA:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOTTIP Gene

No ASD Table

Relevant External Links for HOTTIP Gene

GeneLoc Exon Structure for
HOTTIP
ECgene alternative splicing isoforms for
HOTTIP

Expression for HOTTIP Gene

mRNA expression in normal human tissues for HOTTIP Gene

mRNA differential expression in normal tissues according to GTEx for HOTTIP Gene

This gene is overexpressed in Colon - Transverse (15.4), Cervix - Endocervix (8.3), Cervix - Ectocervix (7.9), Prostate (7.7), Vagina (6.2), and Bladder (5.4).

SOURCE GeneReport for Unigene cluster for HOTTIP Gene Hs.199486

genes like me logo Genes that share expressions with HOTTIP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for HOTTIP Gene

Orthologs for HOTTIP Gene

Evolution for HOTTIP Gene

ENSEMBL:
Gene Tree for HOTTIP (if available)
TreeFam:
Gene Tree for HOTTIP (if available)

No data available for Orthologs for HOTTIP Gene

Paralogs for HOTTIP Gene

No data available for Paralogs for HOTTIP Gene

Variants for HOTTIP Gene

Sequence variations from dbSNP and Humsavar for HOTTIP Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs929250 -- 27,205,482(+) GGAAG(G/T)AGGGG nc-transcript-variant
rs1155727 -- 27,203,075(+) TTTCA(A/G)AATTT intron-variant
rs1859168 -- 27,202,740(+) TGGGG(A/C)CTGAA intron-variant
rs2023842 -- 27,203,444(+) TCCTC(A/C)TGGGT intron-variant
rs2023843 -- 27,203,602(+) TTCCC(C/T)GGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HOTTIP Gene

Variant ID Type Subtype PubMed ID
nsv7393 OTHER Inversion 18451855
nsv887856 CNV Loss 21882294
dgv1094n67 CNV Gain 20364138
dgv7231n71 CNV Loss 21882294
dgv7234n71 CNV Loss 21882294
nsv824042 CNV Gain 20364138
dgv7237n71 CNV Loss 21882294
dgv7238n71 CNV Loss 21882294
dgv7239n71 CNV Loss 21882294
nsv5675 CNV Insertion 18451855
nsv887891 CNV Loss 21882294
nsv519583 CNV Gain 19592680

Relevant External Links for HOTTIP Gene

HapMap Linkage Disequilibrium report
HOTTIP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HOTTIP Gene

Disorders for HOTTIP Gene

No disorders were found for HOTTIP Gene.

No data available for UniProtKB/Swiss-Prot for HOTTIP Gene

Publications for HOTTIP Gene

  1. A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression. (PMID: 21423168) Wang K.C. … Chang H.Y. (Nature 2011) 2 3
  2. Non-coding RNA: HOTTIP goes the distance. (PMID: 21483457) Burgess D.J. (Nat. Rev. Genet. 2011) 2 3
  3. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M. … Rinn J.L. (Elife 2013) 2 3
  4. Long Noncoding RNAs in Interaction With RNA Binding Proteins in Hepatocellular Carcinoma. (PMID: 24910706) Mohamadkhani A. (Hepat Mon 2014) 3
  5. Long non-coding RNA HOTTIP is frequently up-regulated in hepatocellular carcinoma and is targeted by tumour suppressive miR-125b. (PMID: 25424744) Tsang F.H. … Wong C.M. (Liver Int. 2015) 3

Products for HOTTIP Gene

Sources for HOTTIP Gene

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