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Aliases for HOTAIRM1 Gene

Subcategory (RNA class) for HOTAIRM1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HOTAIRM1 Gene

  • HOXA Transcript Antisense RNA, Myeloid-Specific 1 2 3
  • HOXA Transcript Antisense RNA, Myeloid-Specific 1 (Non-Protein Coding) 2 3
  • HOXA Cluster Antisense RNA 1 (Non-Protein Coding) 2 3
  • Hox Transcript Antisense RNA, Myeloid-Specific 1 (Non-Protein Coding) 2
  • HOX Antisense Intergenic RNA Myeloid 1 3
  • Non-Protein Coding RNA 179 2
  • NCRNA00179 3
  • HOXA1-AS1 3
  • HOXA-AS1 3

External Ids for HOTAIRM1 Gene

Previous GeneCards Identifiers for HOTAIRM1 Gene

  • GC00U924339
  • GC07P027137

Summaries for HOTAIRM1 Gene

Entrez Gene Summary for HOTAIRM1 Gene

  • This non-coding locus is located in the HOX gene cluster. Transcription of this locus is induced by retinoic acid, and transcripts likely function in regulation of myelopoiesis through transcriptional activation of several genes in the HOXA cluster, in addition to several beta-2 integrins. [provided by RefSeq, Jan 2013]

GeneCards Summary for HOTAIRM1 Gene

HOTAIRM1 (HOXA Transcript Antisense RNA, Myeloid-Specific 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOTAIRM1 Gene

Genomics for HOTAIRM1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for HOTAIRM1 Gene

Start:
27,095,647 bp from pter
End:
27,100,265 bp from pter
Size:
4,619 bases
Orientation:
Plus strand

Genomic View for HOTAIRM1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOTAIRM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOTAIRM1 Gene

No data available for Regulatory Elements for HOTAIRM1 Gene

Proteins for HOTAIRM1 Gene

Post-translational modifications for HOTAIRM1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOTAIRM1 Gene

Domains for HOTAIRM1 Gene

Gene Families for HOTAIRM1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOTAIRM1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOTAIRM1 Gene

Function for HOTAIRM1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HOTAIRM1 Gene

Localization for HOTAIRM1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOTAIRM1 Gene

Pathways for HOTAIRM1 Gene

SuperPathways for HOTAIRM1 Gene

No Data Available

Interacting Proteins for HOTAIRM1 Gene

Gene Ontology (GO) - Biological Process for HOTAIRM1 Gene

None

No data available for Pathways by source for HOTAIRM1 Gene

Transcripts for HOTAIRM1 Gene

mRNA/cDNA for HOTAIRM1 Gene

(4) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOTAIRM1 Gene

HOXA transcript antisense RNA, myeloid-specific 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HOTAIRM1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOTAIRM1 Gene

No ASD Table

Relevant External Links for HOTAIRM1 Gene

GeneLoc Exon Structure for
HOTAIRM1
ECgene alternative splicing isoforms for
HOTAIRM1

Expression for HOTAIRM1 Gene

mRNA expression in normal human tissues for HOTAIRM1 Gene

SOURCE GeneReport for Unigene cluster for HOTAIRM1 Gene Hs.445239

genes like me logo Genes that share expressions with HOTAIRM1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for HOTAIRM1 Gene

Orthologs for HOTAIRM1 Gene

Evolution for HOTAIRM1 Gene

ENSEMBL:
Gene Tree for HOTAIRM1 (if available)
TreeFam:
Gene Tree for HOTAIRM1 (if available)

No data available for Orthologs for HOTAIRM1 Gene

Paralogs for HOTAIRM1 Gene

No data available for Paralogs for HOTAIRM1 Gene

Variants for HOTAIRM1 Gene

Sequence variations from dbSNP and Humsavar for HOTAIRM1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs6668 -- 27,098,564(+) CTCCC(C/T)GGGAA intron-variant
rs706018 -- 27,099,135(+) GCCGC(C/G/T)GCCGG nc-transcript-variant, intron-variant
rs1008410 -- 27,099,210(+) CAGCT(A/G)AGATT nc-transcript-variant, intron-variant
rs2712239 -- 27,098,859(+) GAATA(A/C)GGAGG intron-variant
rs5024266 -- 27,099,321(+) TAAAT(A/C)AACCC nc-transcript-variant, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HOTAIRM1 Gene

Variant ID Type Subtype PubMed ID
nsv7393 OTHER Inversion 18451855
nsv887856 CNV Loss 21882294
dgv1094n67 CNV Gain 20364138
dgv7231n71 CNV Loss 21882294
dgv7232n71 CNV Loss 21882294
dgv7233n71 CNV Loss 21882294
dgv7234n71 CNV Loss 21882294
nsv887870 CNV Loss 21882294
dgv7235n71 CNV Loss 21882294

Relevant External Links for HOTAIRM1 Gene

HapMap Linkage Disequilibrium report
HOTAIRM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HOTAIRM1 Gene

Disorders for HOTAIRM1 Gene

No disorders were found for HOTAIRM1 Gene.

No data available for UniProtKB/Swiss-Prot for HOTAIRM1 Gene

Publications for HOTAIRM1 Gene

  1. A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster. (PMID: 19144990) Zhang X. … Newburger P.E. (Blood 2009) 2 3
  2. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3

Products for HOTAIRM1 Gene

Sources for HOTAIRM1 Gene

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