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Aliases for HOTAIRM1 Gene

Subcategory (RNA class) for HOTAIRM1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HOTAIRM1 Gene

  • HOXA Transcript Antisense RNA, Myeloid-Specific 1 2 3 5
  • HOXA Transcript Antisense RNA, Myeloid-Specific 1 (Non-Protein Coding) 2 3
  • HOXA Cluster Antisense RNA 1 (Non-Protein Coding) 2 3
  • Hox Transcript Antisense RNA, Myeloid-Specific 1 (Non-Protein Coding) 2
  • HOX Antisense Intergenic RNA Myeloid 1 3
  • Non-Protein Coding RNA 179 2
  • NCRNA00179 3
  • HOXA1-AS1 3
  • HOXA-AS1 3

External Ids for HOTAIRM1 Gene

Previous GeneCards Identifiers for HOTAIRM1 Gene

  • GC00U924339
  • GC07P027137

Summaries for HOTAIRM1 Gene

Entrez Gene Summary for HOTAIRM1 Gene

  • This non-coding locus is located in the HOX gene cluster. Transcription of this locus is induced by retinoic acid, and transcripts likely function in regulation of myelopoiesis through transcriptional activation of several genes in the HOXA cluster, in addition to several beta-2 integrins. [provided by RefSeq, Jan 2013]

GeneCards Summary for HOTAIRM1 Gene

HOTAIRM1 (HOXA Transcript Antisense RNA, Myeloid-Specific 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOTAIRM1 Gene

Genomics for HOTAIRM1 Gene

Regulatory Elements for HOTAIRM1 Gene

Enhancers for HOTAIRM1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HOTAIRM1 on UCSC Golden Path with GeneCards custom track

Promoters for HOTAIRM1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HOTAIRM1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HOTAIRM1 Gene

27,095,647 bp from pter
27,100,265 bp from pter
4,619 bases
Plus strand

Genomic View for HOTAIRM1 Gene

Genes around HOTAIRM1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOTAIRM1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOTAIRM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOTAIRM1 Gene

Proteins for HOTAIRM1 Gene

Post-translational modifications for HOTAIRM1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HOTAIRM1 Gene

Domains & Families for HOTAIRM1 Gene

Gene Families for HOTAIRM1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HOTAIRM1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HOTAIRM1 Gene

Function for HOTAIRM1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HOTAIRM1 Gene

Localization for HOTAIRM1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HOTAIRM1 Gene

Pathways & Interactions for HOTAIRM1 Gene

SuperPathways for HOTAIRM1 Gene

No Data Available

Interacting Proteins for HOTAIRM1 Gene

Gene Ontology (GO) - Biological Process for HOTAIRM1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HOTAIRM1 Gene

Drugs & Compounds for HOTAIRM1 Gene

No Compound Related Data Available

Transcripts for HOTAIRM1 Gene


(4) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HOTAIRM1 Gene

HOXA transcript antisense RNA, myeloid-specific 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOTAIRM1 Gene

No ASD Table

Relevant External Links for HOTAIRM1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HOTAIRM1 Gene

mRNA expression in normal human tissues for HOTAIRM1 Gene

SOURCE GeneReport for Unigene cluster for HOTAIRM1 Gene Hs.445239

genes like me logo Genes that share expression patterns with HOTAIRM1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HOTAIRM1 Gene

Orthologs for HOTAIRM1 Gene

Evolution for HOTAIRM1 Gene

Gene Tree for HOTAIRM1 (if available)
Gene Tree for HOTAIRM1 (if available)

No data available for Orthologs for HOTAIRM1 Gene

Paralogs for HOTAIRM1 Gene

No data available for Paralogs for HOTAIRM1 Gene

Variants for HOTAIRM1 Gene

Sequence variations from dbSNP and Humsavar for HOTAIRM1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1008410 -- 27,099,210(+) CAGCT(A/G)AGATT intron-variant, nc-transcript-variant
rs6956992 -- 27,099,473(+) AGATC(A/G)CATTT intron-variant
rs17465330 -- 27,099,644(+) TATTG(A/T)TTTTT intron-variant
rs17471387 -- 27,098,095(+) CCAGC(G/T)TCCAG intron-variant
rs17471401 -- 27,099,116(+) CAGGA(A/G)CTGCG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HOTAIRM1 Gene

Variant ID Type Subtype PubMed ID
nsv7393 OTHER Inversion 18451855
nsv887856 CNV Loss 21882294
dgv1094n67 CNV Gain 20364138
dgv7231n71 CNV Loss 21882294
dgv7232n71 CNV Loss 21882294
dgv7233n71 CNV Loss 21882294
dgv7234n71 CNV Loss 21882294
nsv887870 CNV Loss 21882294
dgv7235n71 CNV Loss 21882294

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for HOTAIRM1 Gene

Disorders for HOTAIRM1 Gene

Relevant External Links for HOTAIRM1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HOTAIRM1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HOTAIRM1 Gene

Publications for HOTAIRM1 Gene

  1. A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster. (PMID: 19144990) Zhang X. … Newburger P.E. (Blood 2009) 2 3 67
  2. The lincRNA HOTAIRM1, located in the HOXA genomic region, is expressed in acute myeloid leukemia, impacts prognosis in patients in the intermediate-risk cytogenetic category, and is associated with a distinctive microRNA signature. (PMID: 26436590) DA-az-BeyA! M. … Esteve J. (Oncotarget 2015) 3
  3. Long intergenic non-coding RNA HOTAIRM1 regulates cell cycle progression during myeloid maturation in NB4 human promyelocytic leukemia cells. (PMID: 24824789) Zhang X. … Newburger P.E. (RNA Biol 2014) 3
  4. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3

Products for HOTAIRM1 Gene

Sources for HOTAIRM1 Gene