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HORMAD2-AS1 Gene(RNA Gene)

HORMAD2 Antisense RNA 1

GCID:
GC22M030008
GIFtS:
16
Genes Participants
UDN Logo

Aliases for HORMAD2-AS1 Gene

Subcategory (RNA class) for HORMAD2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HORMAD2-AS1 Gene

  • HORMAD2 Antisense RNA 1 2 3 5
  • NONHSAG033653 3
  • MTMR3-AS1 3

External Ids for HORMAD2-AS1 Gene

Summaries for HORMAD2-AS1 Gene

GeneCards Summary for HORMAD2-AS1 Gene

HORMAD2-AS1 (HORMAD2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HORMAD2-AS1 Gene

Genomics for HORMAD2-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HORMAD2-AS1 Gene

Enhancers for HORMAD2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G030201 2.1 FANTOM5 Ensembl ENCODE dbSUPER 14.7 -127.3 -127290 12.4 FOXA2 PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF766 OSM HORMAD2-AS1 MTMR3 THOC5 ASCC2 SELENOM CCDC157 MTFP1 UQCR10 SLC35E4
GH22G030190 2 FANTOM5 Ensembl ENCODE dbSUPER 14.5 -114.8 -114813 9.1 CREB3L1 ZFP64 DMAP1 FEZF1 YY1 ZNF143 SP3 NFYC TBX21 ZNF610 OSM MTMR3 HORMAD2-AS1 ASCC2 SELENOM SF3A1 SLC35E4 MTFP1 DUSP18 CCDC157
GH22G030234 2 FANTOM5 Ensembl ENCODE dbSUPER 12.3 -166.3 -166251 24.6 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 ZBTB7B ZNF416 ZNF143 TUG1 LIF HORMAD2-AS1 MGC20647 MORC2 SEC14L4 DUSP18 THOC5 ENSG00000181123 ASCC2
GH22G030181 1.7 FANTOM5 Ensembl ENCODE dbSUPER 13.2 -103.3 -103256 4.2 HDAC1 PKNOX1 ATF1 TBL1XR1 TCF12 ZNF766 GATA2 SMARCA4 KLF16 PBX2 LIF ASCC2 HORMAD2-AS1 LOC105372988 LIF-AS1 MTMR3 DUSP18 OSM SF3A1 RPS3AP51
GH22G029795 1.6 Ensembl ENCODE dbSUPER 13.8 +281.5 281496 7.1 HDGF FOXA2 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 HORMAD2-AS1 ASCC2 ZMAT5 CABP7 UQCR10 ENSG00000237015
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HORMAD2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HORMAD2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000145161 280 401 HNF4A

Genomic Location for HORMAD2-AS1 Gene

Chromosome:
22
Start:
30,008,742 bp from pter
End:
30,080,480 bp from pter
Size:
71,739 bases
Orientation:
Minus strand

Genomic View for HORMAD2-AS1 Gene

Genes around HORMAD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HORMAD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HORMAD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HORMAD2-AS1 Gene

Proteins for HORMAD2-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HORMAD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HORMAD2-AS1 Gene

Domains & Families for HORMAD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HORMAD2-AS1 Gene

Function for HORMAD2-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HORMAD2-AS1 Gene

Localization for HORMAD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HORMAD2-AS1 Gene

Pathways & Interactions for HORMAD2-AS1 Gene

SuperPathways for HORMAD2-AS1 Gene

PathCards logo More details on SuperPathways for HORMAD2-AS1
No Data Available

Interacting Proteins for HORMAD2-AS1 Gene

Gene Ontology (GO) - Biological Process for HORMAD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HORMAD2-AS1 Gene

Drugs & Compounds for HORMAD2-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HORMAD2-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HORMAD2-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HORMAD2-AS1 Gene

No ASD Table

Relevant External Links for HORMAD2-AS1 Gene

GeneLoc Exon Structure for
HORMAD2-AS1
ECgene alternative splicing isoforms for
HORMAD2-AS1

Expression for HORMAD2-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HORMAD2-AS1 Gene

mRNA expression in normal human tissues for HORMAD2-AS1 Gene
mRNA expression by GTEx for HORMAD2-AS1 Gene
genes like me logo Genes that share expression patterns with HORMAD2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HORMAD2-AS1 Gene

Orthologs for HORMAD2-AS1 Gene

Evolution for HORMAD2-AS1 Gene

ENSEMBL:
Gene Tree for HORMAD2-AS1 (if available)
TreeFam:
Gene Tree for HORMAD2-AS1 (if available)

No data available for Orthologs for HORMAD2-AS1 Gene

Paralogs for HORMAD2-AS1 Gene

No data available for Paralogs for HORMAD2-AS1 Gene

Variants for HORMAD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for HORMAD2-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000005419 -- 30,031,988(+) CACAC(A/G)CACAC intron-variant
rs1000014903 -- 30,025,903(+) GAGCG(C/T)GGAAC intron-variant, utr-variant-3-prime
rs1000060102 -- 30,023,000(+) TTTCT(C/T)CCCAT intron-variant
rs1000067252 -- 30,049,083(+) AAAAA(-/C)TTTTG intron-variant
rs1000186693 -- 30,071,637(+) GGGGT(G/T)TCACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HORMAD2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv761n67 CNV gain 20364138
dgv838e214 CNV gain 21293372
esv2669796 CNV deletion 23128226
esv3307560 CNV mobile element insertion 20981092
esv3441917 CNV insertion 20981092
esv3647554 CNV loss 21293372
esv3647555 CNV loss 21293372
nsv1110864 OTHER inversion 24896259
nsv3592 CNV insertion 18451855
nsv507930 OTHER sequence alteration 20534489
nsv507931 OTHER sequence alteration 20534489
nsv819812 CNV gain 19587683
nsv829165 CNV gain 20364138
nsv829168 CNV gain 20364138
nsv964619 CNV duplication 23825009

Relevant External Links for HORMAD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HORMAD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HORMAD2-AS1 Gene

Disorders for HORMAD2-AS1 Gene

Relevant External Links for HORMAD2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HORMAD2-AS1

No disorders were found for HORMAD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HORMAD2-AS1 Gene

Publications for HORMAD2-AS1 Gene

  1. Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci. (PMID: 25144376) Mirza A.H. … Pociot F. (PLoS ONE 2014) 2 3 64
  2. A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy. (PMID: 22197929) Yu X.Q. … Liu J.J. (Nat. Genet. 2012) 3 64

Products for HORMAD2-AS1 Gene

Sources for HORMAD2-AS1 Gene

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