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Aliases for HORMAD1 Gene

Aliases for HORMAD1 Gene

  • HORMA Domain Containing 1 2 3
  • Cancer/Testis Antigen 46 2 3 4
  • NOHMA 3 4 6
  • Newborn Ovary HORMA Protein 3 4
  • CT46 3 4
  • HORMA Domain-Containing Protein 1 3

External Ids for HORMAD1 Gene

Summaries for HORMAD1 Gene

Entrez Gene Summary for HORMAD1 Gene

  • This gene encodes a HORMA domain-containing protein. HORMA domains are involved in chromatin binding and play a role in cell cycle regulation. The encoded protein may play a role in meiosis, and expression of this gene is a potential marker for cancer. A pseudogene of this gene is located on the long arm of chromosome 6. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Dec 2010]

GeneCards Summary for HORMAD1 Gene

HORMAD1 (HORMA Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is HORMAD2.

UniProtKB/Swiss-Prot for HORMAD1 Gene

  • Plays a key role in meiotic progression. Regulates 3 different functions during meiosis: ensures that sufficient numbers of processed DNA double-strand breaks (DSBs) are available for successful homology search by increasing the steady-state numbers of single-stranded DSB ends. Promotes synaptonemal-complex formation independently of its role in homology search. Plays a key role in the male mid-pachytene checkpoint and the female meiotic prophase checkpoint: required for efficient build-up of ATR activity on unsynapsed chromosome regions, a process believed to form the basis of meiotic silencing of unsynapsed chromatin (MSUC) and meiotic prophase quality control in both sexes (By similarity).

Gene Wiki entry for HORMAD1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HORMAD1 Gene

Genomics for HORMAD1 Gene

Genomic Location for HORMAD1 Gene

Start:
150,698,059 bp from pter
End:
150,720,896 bp from pter
Size:
22,838 bases
Orientation:
Minus strand

Genomic View for HORMAD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HORMAD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HORMAD1 Gene

Regulatory Elements for HORMAD1 Gene

Proteins for HORMAD1 Gene

  • Protein details for HORMAD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86X24-HORM1_HUMAN
    Recommended name:
    HORMA domain-containing protein 1
    Protein Accession:
    Q86X24
    Secondary Accessions:
    • A6NMK2
    • B3KUK1
    • Q4G114
    • Q5T5I3
    • Q5T5I4
    • Q5T5I5
    • Q6FIC1
    • Q9H0K8

    Protein attributes for HORMAD1 Gene

    Size:
    394 amino acids
    Molecular mass:
    45200 Da
    Quaternary structure:
    • Interacts with HORMAD2.
    SequenceCaution:
    • Sequence=AAH33014.1; Type=Frameshift; Positions=89; Evidence={ECO:0000305};

    Alternative splice isoforms for HORMAD1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HORMAD1 Gene

Proteomics data for HORMAD1 Gene at MOPED

Post-translational modifications for HORMAD1 Gene

Other Protein References for HORMAD1 Gene

No data available for DME Specific Peptides for HORMAD1 Gene

Domains for HORMAD1 Gene

Protein Domains for HORMAD1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for HORMAD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86X24

UniProtKB/Swiss-Prot:

HORM1_HUMAN
Domain:
  • Contains 1 HORMA domain.:
    • Q86X24
genes like me logo Genes that share domains with HORMAD1: view

No data available for Gene Families for HORMAD1 Gene

Function for HORMAD1 Gene

Molecular function for HORMAD1 Gene

UniProtKB/Swiss-Prot Function: Plays a key role in meiotic progression. Regulates 3 different functions during meiosis: ensures that sufficient numbers of processed DNA double-strand breaks (DSBs) are available for successful homology search by increasing the steady-state numbers of single-stranded DSB ends. Promotes synaptonemal-complex formation independently of its role in homology search. Plays a key role in the male mid-pachytene checkpoint and the female meiotic prophase checkpoint: required for efficient build-up of ATR activity on unsynapsed chromosome regions, a process believed to form the basis of meiotic silencing of unsynapsed chromatin (MSUC) and meiotic prophase quality control in both sexes (By similarity).

Gene Ontology (GO) - Molecular Function for HORMAD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with HORMAD1: view
genes like me logo Genes that share phenotypes with HORMAD1: view

Animal Models for HORMAD1 Gene

MGI Knock Outs for HORMAD1:

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for HORMAD1 Gene

Localization for HORMAD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HORMAD1 Gene

Nucleus. Chromosome. Note=Preferentially localizes to unsynapsed or desynapsed chromosomal regions during the prophase I stage of meiosis. TRIP13 is required for depletion from synapsed chromosomes. The expression of the phosphorylated form at Ser-377 is restricted to unsynapsed chromosomal regions (By similarity). {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HORMAD1 Gene COMPARTMENTS Subcellular localization image for HORMAD1 gene
Compartment Confidence
cytoskeleton 4
nucleus 4
mitochondrion 2
cytosol 1

Gene Ontology (GO) - Cellular Components for HORMAD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000794 condensed nuclear chromosome IEA --
GO:0005634 nucleus IDA --
GO:0005694 chromosome ISS --
genes like me logo Genes that share ontologies with HORMAD1: view

Pathways for HORMAD1 Gene

SuperPathways for HORMAD1 Gene

No Data Available

Interacting Proteins for HORMAD1 Gene

Gene Ontology (GO) - Biological Process for HORMAD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001824 blastocyst development ISS --
GO:0007126 meiotic nuclear division ISS --
GO:0007130 synaptonemal complex assembly ISS --
GO:0007283 spermatogenesis ISS --
GO:0042138 meiotic DNA double-strand break formation ISS --
genes like me logo Genes that share ontologies with HORMAD1: view

No data available for Pathways by source for HORMAD1 Gene

Transcripts for HORMAD1 Gene

Unigene Clusters for HORMAD1 Gene

HORMA domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HORMAD1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15a · 15b · 15c · 15d · 15e
SP1: - - - -
SP2: -
SP3:
SP4: - - -
SP5: -

Relevant External Links for HORMAD1 Gene

GeneLoc Exon Structure for
HORMAD1
ECgene alternative splicing isoforms for
HORMAD1

Expression for HORMAD1 Gene

mRNA expression in normal human tissues for HORMAD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HORMAD1 Gene

This gene is overexpressed in Testis (42.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for HORMAD1 Gene

SOURCE GeneReport for Unigene cluster for HORMAD1 Gene Hs.298312

mRNA Expression by UniProt/SwissProt for HORMAD1 Gene

Q86X24-HORM1_HUMAN
Tissue specificity: Testis-specific. Over-expressed in carcinomas.
genes like me logo Genes that share expressions with HORMAD1: view

Orthologs for HORMAD1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for HORMAD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HORMAD1 35
  • 99.41 (n)
  • 98.73 (a)
HORMAD1 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia HORMAD1 35
  • 90.48 (n)
  • 88.27 (a)
HORMAD1 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HORMAD1 35
  • 92.81 (n)
  • 91.62 (a)
HORMAD1 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hormad1 35
  • 86.37 (n)
  • 80.95 (a)
Hormad1 16
Hormad1 36
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia HORMAD1 36
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 43 (a)
ManyToMany
-- 36
  • 34 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Hormad1 35
  • 85.26 (n)
  • 78.92 (a)
chicken
(Gallus gallus)
Aves HORMAD1 35
  • 66.67 (n)
  • 64.67 (a)
HORMAD1 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia HORMAD1 36
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia hormad1 35
  • 64.57 (n)
  • 58.38 (a)
zebrafish
(Danio rerio)
Actinopterygii hormad1 35
  • 58.71 (n)
  • 48.01 (a)
hormad1 36
  • 46 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes HOP1 36
  • 12 (a)
OneToMany
HOP1 38
Species with no ortholog for HORMAD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HORMAD1 Gene

ENSEMBL:
Gene Tree for HORMAD1 (if available)
TreeFam:
Gene Tree for HORMAD1 (if available)

Paralogs for HORMAD1 Gene

Paralogs for HORMAD1 Gene

Selected SIMAP similar genes for HORMAD1 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for HORMAD1 Gene

genes like me logo Genes that share paralogs with HORMAD1: view

Variants for HORMAD1 Gene

Sequence variations from dbSNP and Humsavar for HORMAD1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs951281 -- 150,718,646(+) ttttg(A/C)gacgg intron-variant, upstream-variant-2KB
rs1272472 -- 150,716,082(-) atcag(G/T)gcttc intron-variant
rs1336899 -- 150,706,434(+) CAACC(C/T)TGAGT intron-variant
rs1336900 - 150,706,557(+) CACTT(A/G)TATAA reference, missense
rs1415147 -- 150,718,762(+) tgaga(C/T)tacag intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HORMAD1 Gene

Variant ID Type Subtype PubMed ID
nsv872417 CNV Loss 21882294
nsv437158 CNV Loss 16327808
nsv520425 CNV Loss 19592680
nsv528859 CNV Loss 19592680
esv2570262 CNV Deletion 19546169
nsv872418 CNV Gain 21882294
esv2609983 CNV Deletion 19546169
esv2238986 CNV Deletion 18987734
esv3600 CNV Deletion 18987735
esv2717807 CNV Deletion 23290073
esv992009 CNV Deletion 20482838
esv2482983 CNV Deletion 19546169
esv1594619 CNV Deletion 17803354
esv9188 CNV Loss 19470904

Relevant External Links for HORMAD1 Gene

HapMap Linkage Disequilibrium report
HORMAD1
Human Gene Mutation Database (HGMD)
HORMAD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HORMAD1 Gene

Disorders for HORMAD1 Gene

No disorders were found for HORMAD1 Gene.

No data available for UniProtKB/Swiss-Prot for HORMAD1 Gene

Publications for HORMAD1 Gene

  1. Identification of CT46/HORMAD1, an immunogenic cancer/testis antigen encoding a putative meiosis-related protein. (PMID: 15999985) Chen Y.-T. … Simpson A.J.G. (Cancer Immun. 2005) 2 3 4
  2. Restricted germ cell expression of a gene encoding a novel mammalian HORMA domain-containing protein. (PMID: 15567723) Pangas S.A. … Rajkovic A. (Gene Expr. Patterns 2004) 3 4 23
  3. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3

Products for HORMAD1 Gene

Sources for HORMAD1 Gene

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