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Aliases for HOGA1 Gene

Aliases for HOGA1 Gene

  • 4-Hydroxy-2-Oxoglutarate Aldolase 1 2 3 5
  • Dihydrodipicolinate Synthase-Like, Mitochondrial 2 3
  • N-Acetylneuraminate Pyruvate Lyase 2 (Putative) 2 3
  • Probable 2-Keto-4-Hydroxyglutarate Aldolase 3 4
  • Probable KHG-Aldolase 3 4
  • DHDPS-Like Protein 3 4
  • Protein 569272 3 4
  • C10orf65 3 4
  • DHDPSL 3 4
  • Probable 4-Hydroxy-2-Oxoglutarate Aldolase, Mitochondrial 3
  • Dihydrodipicolinate Synthetase Homolog 2 (E. Coli) 2
  • Dihydrodipicolinate Synthetase Homolog 2 3
  • Chromosome 10 Open Reading Frame 65 2
  • Dihydrodipicolinate Synthase-Like 4
  • EC 4.1.3.16 4
  • DHDPS2 3
  • NPL2 3
  • HP3 3

External Ids for HOGA1 Gene

Previous HGNC Symbols for HOGA1 Gene

  • C10orf65
  • DHDPSL

Previous GeneCards Identifiers for HOGA1 Gene

  • GC10P099348
  • GC10P099350
  • GC10P099352
  • GC10P099353
  • GC10P099354
  • GC10P099355
  • GC10P099356
  • GC10P099357

Summaries for HOGA1 Gene

Entrez Gene Summary for HOGA1 Gene

  • The authors of PMID:20797690 cloned this gene while searching for genes in a region of chromosome 10 linked to primary hyperoxalurea type III. They noted that even though the encoded protein has been described as a mitochondrial dihydrodipicolinate synthase-like enzyme, it shares little homology with E. coli dihydrodipicolinate synthase (Dhdps), particularly in the putative substrate-binding region. Moreover, neither lysine biosynthesis nor sialic acid metabolism, for which Dhdps is responsible, occurs in vertebrate mitochondria. They propose that this gene encodes mitochondrial 4-hydroxyl-2-oxoglutarate aldolase (EC 4.1.3.16), which catalyzes the final step in the metabolic pathway of hydroxyproline, releasing glyoxylate and pyruvate. This gene is predominantly expressed in the liver and kidney, and mutations in this gene are found in patients with primary hyperoxalurea type III. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Nov 2010]

GeneCards Summary for HOGA1 Gene

HOGA1 (4-Hydroxy-2-Oxoglutarate Aldolase 1) is a Protein Coding gene. Diseases associated with HOGA1 include hyperoxaluria, primary, type iii and primary hyperoxaluria. Among its related pathways are Metabolism and Glyoxylate and dicarboxylate metabolism. GO annotations related to this gene include protein homodimerization activity and 4-hydroxy-2-oxoglutarate aldolase activity. An important paralog of this gene is NPL.

UniProtKB/Swiss-Prot for HOGA1 Gene

  • Catalyzes the final step in the metabolic pathway of hydroxyproline.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOGA1 Gene

Genomics for HOGA1 Gene

Regulatory Elements for HOGA1 Gene

Promoters for HOGA1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HOGA1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HOGA1 Gene

Chromosome:
10
Start:
97,584,323 bp from pter
End:
97,612,802 bp from pter
Size:
28,480 bases
Orientation:
Plus strand

Genomic View for HOGA1 Gene

Genes around HOGA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HOGA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HOGA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOGA1 Gene

Proteins for HOGA1 Gene

  • Protein details for HOGA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86XE5-HOGA1_HUMAN
    Recommended name:
    4-hydroxy-2-oxoglutarate aldolase, mitochondrial
    Protein Accession:
    Q86XE5
    Secondary Accessions:
    • A8K075
    • Q5T680
    • Q5T684
    • Q711P0
    • Q8N9F2
    • Q96EV5

    Protein attributes for HOGA1 Gene

    Size:
    327 amino acids
    Molecular mass:
    35249 Da
    Quaternary structure:
    • Homotetramer.
    SequenceCaution:
    • Sequence=CAC84901.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI15457.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for HOGA1 Gene

    Alternative splice isoforms for HOGA1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HOGA1 Gene

Proteomics data for HOGA1 Gene at MOPED

Post-translational modifications for HOGA1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HOGA1 Gene

No data available for DME Specific Peptides for HOGA1 Gene

Domains & Families for HOGA1 Gene

Protein Domains for HOGA1 Gene

Suggested Antigen Peptide Sequences for HOGA1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86XE5

UniProtKB/Swiss-Prot:

HOGA1_HUMAN :
  • Belongs to the DapA family.
Family:
  • Belongs to the DapA family.
genes like me logo Genes that share domains with HOGA1: view

No data available for Gene Families for HOGA1 Gene

Function for HOGA1 Gene

Molecular function for HOGA1 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
4-hydroxy-2-oxoglutarate = pyruvate + glyoxylate.
UniProtKB/Swiss-Prot EnzymeRegulation:
Inhibited by divalent cations.
UniProtKB/Swiss-Prot Function:
Catalyzes the final step in the metabolic pathway of hydroxyproline.

Enzyme Numbers (IUBMB) for HOGA1 Gene

Phenotypes for HOGA1 Gene

genes like me logo Genes that share phenotypes with HOGA1: view

Human Phenotype Ontology for HOGA1 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Model Products

CRISPR Products

miRNA for HOGA1 Gene

miRTarBase miRNAs that target HOGA1

No data available for Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for HOGA1 Gene

Localization for HOGA1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HOGA1 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HOGA1 Gene COMPARTMENTS Subcellular localization image for HOGA1 gene
Compartment Confidence
extracellular 5
mitochondrion 3

No data available for Gene Ontology (GO) - Cellular Components for HOGA1 Gene

Pathways & Interactions for HOGA1 Gene

genes like me logo Genes that share pathways with HOGA1: view

Pathways by source for HOGA1 Gene

Interacting Proteins for HOGA1 Gene

Gene Ontology (GO) - Biological Process for HOGA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046487 glyoxylate metabolic process IDA 21998747
genes like me logo Genes that share ontologies with HOGA1: view

No data available for SIGNOR curated interactions for HOGA1 Gene

Drugs & Compounds for HOGA1 Gene

(2) Drugs for HOGA1 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Pyruvic acid Approved Nutra 0
Glyoxylic acid Experimental Pharma 0

(1) Additional Compounds for HOGA1 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
4-Hydroxy-2-oxoglutaric acid
  • (+/-)-2-hydroxy-4-oxopentanedioate
  • (+/-)-2-hydroxy-4-oxopentanedioic acid
  • 2-Hydroxy-4-oxopentanedioate
  • 2-Hydroxy-4-oxopentanedioic acid
  • 2-Keto-4-hydroxyglutarate
1187-99-1
genes like me logo Genes that share compounds with HOGA1: view

Transcripts for HOGA1 Gene

Unigene Clusters for HOGA1 Gene

4-hydroxy-2-oxoglutarate aldolase 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HOGA1 Gene

No ASD Table

Relevant External Links for HOGA1 Gene

GeneLoc Exon Structure for
HOGA1
ECgene alternative splicing isoforms for
HOGA1

Expression for HOGA1 Gene

mRNA expression in normal human tissues for HOGA1 Gene

mRNA differential expression in normal tissues according to GTEx for HOGA1 Gene

This gene is overexpressed in Kidney - Cortex (x11.9), Liver (x9.6), and Heart - Left Ventricle (x6.0).

Protein differential expression in normal tissues from HIPED for HOGA1 Gene

This gene is overexpressed in Kidney (36.5), Islet of Langerhans (9.8), and Liver (8.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for HOGA1 Gene



SOURCE GeneReport for Unigene cluster for HOGA1 Gene Hs.180346

genes like me logo Genes that share expression patterns with HOGA1: view

Protein tissue co-expression partners for HOGA1 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for HOGA1 Gene

Orthologs for HOGA1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for HOGA1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia HOGA1 35
  • 89.7 (n)
  • 89.91 (a)
HOGA1 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HOGA1 35
  • 91.05 (n)
  • 92.9 (a)
HOGA1 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hoga1 35
  • 87.12 (n)
  • 89.41 (a)
Hoga1 16
Hoga1 36
  • 89 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia HOGA1 35
  • 99.69 (n)
  • 99.69 (a)
rat
(Rattus norvegicus)
Mammalia Hoga1 35
  • 87.33 (n)
  • 88.47 (a)
oppossum
(Monodelphis domestica)
Mammalia HOGA1 36
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia HOGA1 36
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves C10ORF65 35
  • 73.33 (n)
  • 72.33 (a)
HOGA1 36
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia HOGA1 36
  • 53 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia hoga1 35
  • 68.46 (n)
  • 72.82 (a)
Str.8565 35
zebrafish
(Danio rerio)
Actinopterygii hoga1 35
  • 67.11 (n)
  • 70.13 (a)
hoga1 36
  • 65 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2495 35
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7737 35
bread mold
(Neurospora crassa)
Ascomycetes NCU09532 35
  • 44.17 (n)
  • 31.12 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7478 36
  • 57 (a)
OneToOne
Species with no ortholog for HOGA1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HOGA1 Gene

ENSEMBL:
Gene Tree for HOGA1 (if available)
TreeFam:
Gene Tree for HOGA1 (if available)

Paralogs for HOGA1 Gene

Paralogs for HOGA1 Gene

(1) SIMAP similar genes for HOGA1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with HOGA1: view

Variants for HOGA1 Gene

Sequence variations from dbSNP and Humsavar for HOGA1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
VAR_064035 Hyperoxaluria primary 3 (HP3)
VAR_064036 Hyperoxaluria primary 3 (HP3)
rs933057 -- 97,611,972(-) TTCCT(G/T)TCTGA utr-variant-3-prime
rs1105999 -- 97,600,776(+) TTGAG(G/T)GACTT intron-variant
rs1124116 -- 97,611,390(-) GTAAC(C/T)GCCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HOGA1 Gene

Variant ID Type Subtype PubMed ID
nsv7509 CNV Insertion 18451855
nsv818782 CNV Loss 17921354

Variation tolerance for HOGA1 Gene

Residual Variation Intolerance Score: 65.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.32; 26.27% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HOGA1 Gene

HapMap Linkage Disequilibrium report
HOGA1
Human Gene Mutation Database (HGMD)
HOGA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HOGA1 Gene

Disorders for HOGA1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for HOGA1 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, and GeneCards

Disorder Aliases PubMed IDs
hyperoxaluria, primary, type iii
  • primary hyperoxaluria type 3
primary hyperoxaluria
  • hyperoxaluria, primary
- elite association - COSMIC cancer census association via MalaCards
Search HOGA1 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

HOGA1_HUMAN
  • Hyperoxaluria primary 3 (HP3) [MIM:613616]: A disorder phenotypically similar to hyperoxaluria type 1 and type 2. It is characterized by increase in urinary oxalate excretion and mild glycolic aciduria. Clinical manifestations include calcium oxalate urolithiasis, hematuria, pain, and/or urinary tract infection. {ECO:0000269 PubMed:20797690}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for HOGA1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOGA1
genes like me logo Genes that share disorders with HOGA1: view

No data available for Genatlas for HOGA1 Gene

Publications for HOGA1 Gene

  1. Mutations in DHDPSL are responsible for primary hyperoxaluria type III. (PMID: 20797690) Belostotsky R. … Frishberg Y. (Am. J. Hum. Genet. 2010) 2 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Novel findings in patients with primary hyperoxaluria type III and implications for advanced molecular testing strategies. (PMID: 22781098) Beck B.B. … Hoppe B. (Eur. J. Hum. Genet. 2013) 3
  4. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  5. Purification, crystallization and preliminary crystallographic analysis of human dihydrodipicolinate synthase-like protein (DHDPSL). (PMID: 22232173) Bunker R.D. … Baker E.N. (Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 2012) 3

Products for HOGA1 Gene

Sources for HOGA1 Gene

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