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HNRNPUL2 Gene

protein-coding   GIFtS: 44
GCID: GC11M062493

Heterogeneous Nuclear Ribonucleoprotein U-Like 2


(Previous symbol: HNRPUL2)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Heterogeneous Nuclear Ribonucleoprotein U-Like 21 2
HNRPUL21 2 3
Scaffold-Attachment Factor A22 3
SAF-A22 3
Heterogeneous Nuclear Ribonucleoprotein U-Like Protein 22

External Ids:    HGNC: 254511   Entrez Gene: 2210922   Ensembl: ENSG000002147537   UniProtKB: Q1KMD33   

Export aliases for HNRNPUL2 gene to outside databases

Previous GC identifers: GC11M062236 GC11M062482 GC11M058810


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for HNRNPUL2 Gene:
HNRNPUL2 (heterogeneous nuclear ribonucleoprotein U-like 2) is a protein-coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is HNRNPUL1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NC_018922.2  NT_167190.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the HNRNPUL2 gene promoter:
         GR   E2F-4   E2F-3a   E2F-5   E2F-2   Max   E2F   E2F-1   GR-alpha   c-Myc   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for HNRNPUL2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat HNRNPUL2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q12.3   Ensembl cytogenetic band:  11q12.3   HGNC cytogenetic band: 11q12

HNRNPUL2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HNRNPUL2 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M062493:  view genomic region     (about GC identifiers)

Start:
62,480,097 bp from pter      End:
62,494,857 bp from pter
Size:
14,761 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: HNRL2_HUMAN, Q1KMD3 (See protein sequence)
Recommended Name: Heterogeneous nuclear ribonucleoprotein U-like protein 2  
Size: 747 amino acids; 85105 Da
Subunit: Binds to MLF1 and retains it in the nucleus (By similarity)
Secondary accessions: Q8N3B3

Explore the universe of human proteins at neXtProt for HNRNPUL2: NX_Q1KMD3

Explore proteomics data for HNRNPUL2 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys273, Lys406, Lys471, Lys553, Lys601
  • Modification sites at PhosphoSitePlus

  • See HNRNPUL2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001073027.1  
    ENSEMBL proteins: 
     ENSP00000301785  

    HNRNPUL2 Human Recombinant Protein Products:

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    antibodies-online proteins for HNRNPUL2 (2 products) 

     
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    antibodies-online kits for HNRNPUL2 (16 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    Selected InterPro protein domains (see all 7):
     IPR001870 B30.2/SPRY
     IPR026745 hnRNP_U
     IPR027417 P-loop_NTPase
     IPR003877 SPRY_rcpt
     IPR003034 SAP_dom

    Graphical View of Domain Structure for InterPro Entry Q1KMD3

    ProtoNet protein and cluster: Q1KMD3

    1 Blocks protein domain: IPB003034 DNA-binding SAP

    UniProtKB/Swiss-Prot: HNRL2_HUMAN, Q1KMD3
    Similarity: Contains 1 B30.2/SPRY domain
    Similarity: Contains 1 SAP domain


    Find genes that share domains with HNRNPUL2           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 5 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding ----
    GO:0005515protein binding ----
    GO:0005524ATP binding ----
    GO:0016301kinase activity ----
    GO:0044822poly(A) RNA binding IDA--
         
    Find genes that share ontologies with HNRNPUL2           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for HNRNPUL2

    miRNA
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    miRTarBase miRNAs that target HNRNPUL2:
    hsa-mir-326 (MIRT043657), hsa-mir-331-3p (MIRT019244)

    Block miRNA regulation of human, mouse, rat HNRNPUL2 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate HNRNPUL2 (see all 113):
    hsa-miR-193a-3p hsa-miR-642a hsa-miR-520e hsa-miR-146a hsa-miR-30d hsa-miR-342-3p hsa-miR-371-5p hsa-miR-519a
    Browse SwitchGear 3'UTR luciferase reporter plasmids
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    HNRL2_HUMAN, Q1KMD3: Nucleus (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus4
    cytosol2

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus ISS--

    Find genes that share ontologies with HNRNPUL2           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for HNRNPUL2
    Interactions:

        Search GeneGlobe Interaction Network for HNRNPUL2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 9)

    Selected Interacting proteins for HNRNPUL2 (Q1KMD32, 3 ENSP000003017854) via UniProtKB, MINT, STRING, and/or I2D (see all 48)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    EIF4A2Q142403, ENSP000003263814I2D: score=1 STRING: ENSP00000326381
    KHDRBS2Q5VWX13, ENSP000002811564I2D: score=1 STRING: ENSP00000281156
    MAP1LC3AQ9H4923, ENSP000003639704I2D: score=1 STRING: ENSP00000363970
    MEPCEQ7L2J03, ENSP000003085464I2D: score=1 STRING: ENSP00000308546
    HNRNPA1P096513, ENSP000003418264I2D: score=1 STRING: ENSP00000341826
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with HNRNPUL2           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for HNRNPUL2 (HNRL2)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for HNRNPUL2 gene: 
    NM_001079559.2  

    Unigene Cluster for HNRNPUL2:

    Heterogeneous nuclear ribonucleoprotein U-like 2
    Hs.657058  [show with all ESTs]
    Unigene Representative Sequence: NM_001079559
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000301785(uc001nuw.3) ENST00000540127
    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate HNRNPUL2 (see all 113):
    hsa-miR-193a-3p hsa-miR-642a hsa-miR-520e hsa-miR-146a hsa-miR-30d hsa-miR-342-3p hsa-miR-371-5p hsa-miR-519a
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat HNRNPUL2

    Additional mRNA sequence: 

    BC029105.1 BC032369.1 DQ470474.1 NR_037946.1 

    13 DOTS entries:

    DT.100681227  DT.95268387  DT.70105191  DT.100800912  DT.95200188  DT.120755079  DT.102841778  DT.92023271 
    DT.120755081  DT.95128214  DT.120755019  DT.92347674  DT.120755046 

    Selected AceView cDNA sequences (see all 779):

    BX440982 CB321829 BQ932480 BQ942387 AI380019 AI355366 AK027524 AA758351 
    AA628383 CB125535 BE701760 BQ575898 BE773563 BU786537 BM707568 BQ061303 
    BE619436 BI835449 AI400946 AA298708 CB852530 CR609654 BC041640 BF594692 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    HNRNPUL2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAGCTGAATC
    HNRNPUL2 Expression
    About this image

    HNRNPUL2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    HNRNPUL2 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.657058
        Custom PCR Arrays for HNRNPUL2
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for HNRNPUL2 gene from Selected species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Hnrnpul21 , 5 heterogeneous nuclear ribonucleoprotein U-like 21, 5 92.13(n)1
    95.17(a)1
      19 (5.70 cM)5
    686931  NM_001081196.11  NP_001074665.11 
     88194015 
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    60(a)
    1 → many
    GL343928.1(28683-58135)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.116972 Xenopus laevis transcribed sequence with weak similarity more 75.96(n)    BU913939.1 
    zebrafish
    (Danio rerio)
    Actinopterygii HNRNPUL26
    heterogeneous nuclear ribonucleoprotein U-like 2
    35(a)
    1 → many
    14(23481738-23498569) ENSDARG00000056830
    fruit fly
    (Drosophila melanogaster)
    Insecta CG301226
    --
    17(a)
    1 → many
    2R(14519833-14526773)
    worm
    (Caenorhabditis elegans)
    Secernentea Y41E3.116
    Protein Y41E3.11, isoform a
    8(a)
    1 → many
    IV(15040075-15049283) WBGene00012769
    rice
    (Oryza sativa)
    Liliopsida AK101723.12   -- 72.1(n)    AK101723.1 


    ENSEMBL Gene Tree for HNRNPUL2 (if available)
    TreeFam Gene Tree for HNRNPUL2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for HNRNPUL2 gene
    HNRNPUL12  HNRNPUL2-BSCL22  HNRNPU2  
    4 SIMAP similar genes for HNRNPUL2 using alignment to 2 protein entries:     HNRL2_HUMAN (see all proteins):
    HNRNPUL2-BSCL2    HNRPU    HNRNPUL1    HNRNPU

    Find genes that share paralogs with HNRNPUL2           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for HNRNPUL2:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv348CNV Loss18451855
    nsv897623CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing HNRNPUL2
    DNA2.0 Custom Variant and Variant Library Synthesis for HNRNPUL2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for HNRNPUL2 gene, integrated from 10 sources (see all 26):
    (articles sorted by number of sources associating them with HNRNPUL2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Cleavage and polyadenylation specificity factor 1 (CPSF1) regulates alternative splicing of interleukin 7 receptor (IL7R) exon 6. (PubMed id 23151878)1 Evsyukova I....Garcia-Blanco M.A. (RNA 2013)
    2. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    3. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    4. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (Sci Signal 2012)
    5. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    6. Integrative analysis of the ubiquitin proteome isolated using Tandem Ubiquitin Binding Entities (TUBEs). (PubMed id 22178446)1 Lopitz-Otsoa F....Rodriguez M.S. (J Proteomics 2012)
    7. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PubMed id 22751105)1 Chu L....Tomasson M.H. (J. Clin. Invest. 2012)
    8. A high-throughput approach for measuring temporal changes in the interactome. (PubMed id 22863883)1 Kristensen A.R....Foster L.J. (Nat. Methods 2012)
    9. Regulation of DNA-end resection by hnRNPU-like proteins promotes DNA double-strand break signaling and repair. (PubMed id 22365830)1 Polo S.E....Jackson S.P. (Mol. Cell 2012)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 221092 HGNC: 25451 AceView: BSCL2andDKFZp762N1910 Ensembl:ENSG00000214753 euGenes: HUgn221092
    ECgene: HNRNPUL2 H-InvDB: HNRNPUL2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for HNRNPUL2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for HNRNPUL2 gene:
    Search GeneIP for patents involving HNRNPUL2

    GeneCards and IP:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     antibodies-online proteins for HNRNPUL2 (2 products)
           
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