Aliases for HNRNPC Gene
Aliases for HNRNPC Gene
External Ids for HNRNPC Gene
- HGNC: 5035
- Entrez Gene: 3183
- Ensembl: ENSG00000092199
- OMIM: 164020
- UniProtKB: P07910
Previous HGNC Symbols for HNRNPC Gene
- HNRPC
Previous GeneCards Identifiers for HNRNPC Gene
- GC14M020747
- GC14M021677
- GC14M001797
Summaries for HNRNPC Gene
-
This gene belongs to the subfamily of ubiquitously expressed heterogeneous nuclear ribonucleoproteins (hnRNPs). The hnRNPs are RNA binding proteins and they complex with heterogeneous nuclear RNA (hnRNA). These proteins are associated with pre-mRNAs in the nucleus and appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. While all of the hnRNPs are present in the nucleus, some seem to shuttle between the nucleus and the cytoplasm. The hnRNP proteins have distinct nucleic acid binding properties. The protein encoded by this gene can act as a tetramer and is involved in the assembly of 40S hnRNP particles. Multiple transcript variants encoding at least two different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]
GeneCards Summary for HNRNPC Gene
HNRNPC (Heterogeneous Nuclear Ribonucleoprotein C (C1/C2)) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression. GO annotations related to this gene include nucleic acid binding and identical protein binding. An important paralog of this gene is HNRNPCL1.
UniProtKB/Swiss-Prot for HNRNPC Gene
-
Binds pre-mRNA and nucleates the assembly of 40S hnRNP particles (PubMed:8264621). Interacts with poly-U tracts in the 3-UTR or 5-UTR of mRNA and modulates the stability and the level of translation of bound mRNA molecules (PubMed:12509468, PubMed:16010978, PubMed:7567451, PubMed:8264621). Single HNRNPC tetramers bind 230-240 nucleotides. Trimers of HNRNPC tetramers bind 700 nucleotides (PubMed:8264621). May play a role in the early steps of spliceosome assembly and pre-mRNA splicing. N6-methyladenosine (m6A) has been shown to alter the local structure in mRNAs and long non-coding RNAs (lncRNAs) via a mechanism named m(6)A-switch, facilitating binding of HNRNPC, leading to regulation of mRNA splicing (PubMed:25719671).
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNRNPC Gene
Genomics for HNRNPC Gene
Regulatory Elements for HNRNPC Gene
Enhancers for HNRNPC Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HNRNPC on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HNRNPC Gene
- Chromosome:
- 14
- Start:
- 21,209,136 bp from pter
- End:
- 21,269,494 bp from pter
- Size:
- 60,359 bases
- Orientation:
- Minus strand
Genomic View for HNRNPC Gene
Genes around HNRNPC on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 14q11.2 by Ensembl
- 14q11.2 by Entrez Gene
- 14q11.2 by HGNC
HNRNPC Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HNRNPC Gene
Proteins for HNRNPC Gene
-
Protein details for HNRNPC Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P07910-HNRPC_HUMAN
- Recommended name:
- Heterogeneous nuclear ribonucleoproteins C1/C2
- Protein Accession:
- P07910
- D3DS19
- D3DS22
- P22628
- Q53EX2
- Q59FD3
- Q5FWE8
- Q86SF8
- Q86U45
- Q96HK7
- Q96HM4
- Q96IY5
- Q9BTS3
Protein attributes for HNRNPC Gene
- Size:
- 306 amino acids
- Molecular mass:
- 33670 Da
- Quaternary structure:
-
- Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. Assembly of 3 tetramers with bound pre-mRNA gives rise to a 19S complex that interacts with HNRNPA2B1 tetramers. Component of the 40S hnRNP particle. Identified in the spliceosome C complex. Interacts with IGF2BP1.
- SequenceCaution:
-
- Sequence=BAD92764.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Three dimensional structures from OCA and Proteopedia for HNRNPC Gene
Protein Expression for HNRNPC Gene
Post-translational modifications for HNRNPC Gene
- Phosphorylated on Ser-260 and Ser-299 in resting cells. Phosphorylated on Ser-253 and on 1 serine residue in the poly-Ser stretch at position 238 in response to hydrogen peroxide.
- Sumoylated. Sumoylation reduces affinity for mRNA.
- Ubiquitination at posLast=88 and posLast=8989
- Modification sites at PhosphoSitePlus
Other Protein References for HNRNPC Gene
- ENSEMBL proteins:
-
- ENSP00000338095
- ENSP00000404559
- ENSP00000404848
- ENSP00000442816
- ENSP00000450467
- ENSP00000450544
- ENSP00000450548
- ENSP00000450601
- ENSP00000450629
- ENSP00000450669
- ENSP00000450725
- ENSP00000450790
- ENSP00000451176
- ENSP00000451187
- ENSP00000451291
- ENSP00000451292
- ENSP00000451652
- ENSP00000451708
- ENSP00000451892
- ENSP00000452021
- ENSP00000452185
- ENSP00000452213
- ENSP00000452214
- ENSP00000452276
- ENSP00000452545
- ENSP00000452573
- ENSP00000452599
- REFSEQ proteins:
Antibody Products
- EMD Millipore Complete listing of Mono and Polychlonal Antibodies for HNRNPC
- Cell Signaling Technology (CST) Antibodies for HNRNPC (hnRNP C1/C2)
-
Custom Antibody ServicesOriGene Antibodies for HNRNPC
- Novus Biologicals Antibodies for HNRNPC
- Invitrogen Antibodies for HNRNPC
- antibodies-online Antibodies for HNRNPC: See all 73
- GeneTex HNRNPC antibody for HNRNPC
-
Santa Cruz Biotechnology (SCBT) Antibodies for HNRNPC
Protein Products
- Search Origene for MassSpec and Protein Over-expression Lysates for HNRNPC
- Origene Custom Protein Services for HNRNPC
- ProSpec Recombinant Proteins for HNRNPC
- antibodies-online Proteins for HNRNPC: See all 8
- Search antibodies-online for peptides
- Search GeneTex for Proteins for HNRNPC
Assay Products
- antibodies-online Kits for HNRNPC: See all 23
No data available for DME Specific Peptides for HNRNPC Gene
Domains & Families for HNRNPC Gene
Gene Families for HNRNPC Gene
Protein Domains for HNRNPC Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for HNRNPC Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P07910- Family:
-
- Belongs to the RRM HNRPC family. RALY subfamily.
Function for HNRNPC Gene
Molecular function for HNRNPC Gene
- UniProtKB/Swiss-Prot Function:
- Binds pre-mRNA and nucleates the assembly of 40S hnRNP particles (PubMed:8264621). Interacts with poly-U tracts in the 3-UTR or 5-UTR of mRNA and modulates the stability and the level of translation of bound mRNA molecules (PubMed:12509468, PubMed:16010978, PubMed:7567451, PubMed:8264621). Single HNRNPC tetramers bind 230-240 nucleotides. Trimers of HNRNPC tetramers bind 700 nucleotides (PubMed:8264621). May play a role in the early steps of spliceosome assembly and pre-mRNA splicing. N6-methyladenosine (m6A) has been shown to alter the local structure in mRNAs and long non-coding RNAs (lncRNAs) via a mechanism named m(6)A-switch, facilitating binding of HNRNPC, leading to regulation of mRNA splicing (PubMed:25719671).
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding | IDA | 16217013 |
| GO:0000980 | RNA polymerase II distal enhancer sequence-specific DNA binding | IDA | 16217013 |
| GO:0003676 | nucleic acid binding | IEA | -- |
| GO:0003723 | RNA binding | NAS | 9731529 |
| GO:0003730 | mRNA 3-UTR binding | IDA | 16010978 |
Phenotypes for HNRNPC Gene
- MGI mutant phenotypes for HNRNPC:
- inferred from 2 alleles
- GenomeRNAi human phenotypes for HNRNPC:
-
- Increased viability
- Increased vaccinia virus (VACV) infection
- Increased gamma-H2AX phosphorylation
- Decreased viability
- shRNA abundance <= 50%
- Decreased ionizing radiation sensitivity
- Decreased NF-kappaB reporter expression
- FOXO1 nuclear localization
- Decreased homologous recombination repair frequency
- Decreased viability of wild-type and TP53 knockout cells
- Decreased viability after ionizing radiation
- Downregulation of NFkappaB pathway
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for HNRNPC gene
-
ViGene Biosciences ready-to-package AAV shRNAs for HNRNPC gene
- Search ViGene Biosciences for HNRNPC
CRISPR Products
-
OriGene CRISPR knockouts for HNRNPC
-
Santa Cruz Biotechnology (SCBT) CRISPR for HNRNPC
- GenScript: Design CRISPR guide RNA sequences for HNRNPC
miRNA for HNRNPC Gene
- miRTarBase miRNAs that target HNRNPC
-
- hsa-mir-744-5p (MIRT037494)
- hsa-mir-455-3p (MIRT037890)
- hsa-mir-505-5p (MIRT037959)
- hsa-mir-615-3p (MIRT039991)
- hsa-mir-18a-3p (MIRT040851)
- hsa-mir-484 (MIRT042196)
- hsa-mir-342-3p (MIRT043694)
- hsa-mir-186-5p (MIRT045150)
- hsa-mir-30c-5p (MIRT047904)
- hsa-let-7e-5p (MIRT051596)
- hsa-mir-877-3p (MIRT277852)
- hsa-mir-485-3p (MIRT341160)
- hsa-mir-539-3p (MIRT341161)
- hsa-mir-136-3p (MIRT380416)
- hsa-mir-183-3p (MIRT475571)
- hsa-mir-5196-5p (MIRT475572)
- hsa-mir-4747-5p (MIRT475573)
- hsa-mir-4533 (MIRT475574)
- hsa-mir-6775-5p (MIRT475575)
- hsa-mir-5090 (MIRT475576)
- hsa-mir-4517 (MIRT475577)
- hsa-mir-202-3p (MIRT502260)
- hsa-mir-4698 (MIRT502261)
- hsa-mir-8063 (MIRT502262)
- hsa-mir-548p (MIRT502263)
- hsa-mir-583 (MIRT502264)
- hsa-mir-1276 (MIRT502265)
- hsa-mir-4311 (MIRT502266)
- hsa-mir-548e-5p (MIRT502267)
- hsa-mir-224-5p (MIRT502268)
- hsa-mir-3924 (MIRT511473)
- hsa-mir-4539 (MIRT511474)
- hsa-mir-4724-5p (MIRT511475)
- hsa-mir-4511 (MIRT511476)
- hsa-mir-3133 (MIRT511477)
- hsa-mir-365b-5p (MIRT557221)
- hsa-mir-8052 (MIRT557222)
- hsa-mir-365a-5p (MIRT557223)
- hsa-mir-3199 (MIRT557224)
- hsa-mir-6503-3p (MIRT557225)
- hsa-mir-606 (MIRT557226)
- hsa-mir-708-5p (MIRT557227)
- hsa-mir-28-5p (MIRT557228)
- hsa-mir-3139 (MIRT557229)
- hsa-mir-4699-5p (MIRT571997)
- hsa-mir-4773 (MIRT571998)
- hsa-mir-7850-5p (MIRT574674)
- hsa-mir-620 (MIRT574675)
- hsa-mir-1270 (MIRT574676)
- hsa-mir-4531 (MIRT574677)
- hsa-mir-139-3p (MIRT574678)
- hsa-mir-4524a-3p (MIRT574679)
- hsa-mir-6738-3p (MIRT657339)
- hsa-mir-544a (MIRT657340)
- hsa-mir-6828-3p (MIRT657341)
- hsa-mir-6071 (MIRT657342)
- hsa-mir-1298-5p (MIRT657343)
- hsa-mir-3157-5p (MIRT657344)
- hsa-mir-627-3p (MIRT657345)
- hsa-mir-6515-3p (MIRT657346)
- hsa-mir-1-5p (MIRT657347)
- hsa-mir-5000-5p (MIRT657348)
- hsa-mir-6781-3p (MIRT667942)
- hsa-mir-2682-3p (MIRT667943)
- hsa-mir-6877-3p (MIRT667944)
- hsa-mir-6819-3p (MIRT667945)
miRNA Products
- Search ViGene Biosciences for HNRNPC
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for HNRNPC
- Browse OriGene Inhibitory RNA Products For HNRNPC
-
ViGene Biosciences ready-to-package AAV shRNAs for HNRNPC gene
Clone Products
- Sino Biological Human cDNA Clone for HNRNPC
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for HNRNPC
Cell Line Products
-
ViGene Biosciences adenoviral particle packaged cDNA for HNRNPC gene
-
ViGene Biosciences lentiviral particle packaged cDNA for HNRNPC gene
-
ViGene Biosciences ready-to-package AAV shRNAs for HNRNPC gene
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HNRNPC Gene
Localization for HNRNPC Gene
Subcellular locations from UniProtKB/Swiss-Prot for HNRNPC Gene
- Nucleus. Note=Component of ribonucleosomes.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| nucleus | 5 |
| cytosol | 5 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000790 | nuclear chromatin | IDA | 16217013 |
| GO:0005634 | nucleus | IEA,IDA | 21630459 |
| GO:0005654 | nucleoplasm | TAS,IDA | -- |
| GO:0005681 | spliceosomal complex | IDA | 9731529 |
| GO:0005697 | colocalizes_with telomerase holoenzyme complex | IDA | 18082603 |
Pathways & Interactions for HNRNPC Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | mRNA Splicing - Major Pathway |
.79
|
.50
.41
|
| 2 | Metabolism of proteins | ||
| 3 | SUMOylation |
.95
|
|
| 4 | Chromatin Regulation / Acetylation | ||
| 5 | Translational Control | ||
Pathways by source for HNRNPC Gene
2 Cell Signaling Technology pathways for HNRNPC Gene
2 BioSystems pathways for HNRNPC Gene
9 Reactome pathways for HNRNPC Gene
1 KEGG pathway for HNRNPC Gene
1 Qiagen pathway for HNRNPC Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | TAS | -- |
| GO:0001649 | osteoblast differentiation | IDA | 16210410 |
| GO:0006397 | mRNA processing | IEA | -- |
| GO:0008380 | RNA splicing | TAS | 3110598 |
| GO:0010467 | gene expression | TAS | -- |
Transcripts for HNRNPC Gene
mRNA/cDNA for HNRNPC Gene
- (12) REFSEQ mRNAs :
- (30) Additional mRNA sequences :
- (1446) Selected AceView cDNA sequences:
- (33) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for HNRNPC Gene
CRISPR Products
-
OriGene CRISPR knockouts for HNRNPC
-
Santa Cruz Biotechnology (SCBT) CRISPR for HNRNPC
- GenScript: Design CRISPR guide RNA sequences for HNRNPC
miRNA Products
- Search ViGene Biosciences for HNRNPC
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for HNRNPC
- Browse OriGene Inhibitory RNA Products For HNRNPC
-
ViGene Biosciences ready-to-package AAV shRNAs for HNRNPC gene
Clone Products
- Sino Biological Human cDNA Clone for HNRNPC
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for HNRNPC
Flow Cytometry Products
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | · | 9c | ^ | 10a | · | 10b | · | 10c | · | 10d | · | 10e | · | 10f | ^ | 11a | · | 11b | · | 11c | ^ | 12a | · |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||
| SP3: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP4: | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||
| SP5: | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||||
| SP6: | - | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP7: | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||||||
| SP8: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP9: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP10: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP11: | - | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP12: | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||||||
| SP13: | - | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP14: | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| SP15: | - | - | - | - | - | - | - | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||||||
| SP16: |
| ExUns: | 12b | · | 12c | · | 12d | · | 12e | ^ | 13a | · | 13b |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | |||||||||||
| SP2: | |||||||||||
| SP3: | |||||||||||
| SP4: | |||||||||||
| SP5: | |||||||||||
| SP6: | |||||||||||
| SP7: | |||||||||||
| SP8: | |||||||||||
| SP9: | |||||||||||
| SP10: | |||||||||||
| SP11: | |||||||||||
| SP12: | |||||||||||
| SP13: | |||||||||||
| SP14: | |||||||||||
| SP15: | |||||||||||
| SP16: |
Expression for HNRNPC Gene
This gene is overexpressed in Tlymphocyte (7.3).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for HNRNPC Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of HNRNPC Gene:
HNRNPCSOURCE GeneReport for Unigene cluster for HNRNPC Gene:
Hs.508848Evidence on tissue expression from TISSUES for HNRNPC Gene
- Nervous system(5)
- Blood(4.8)
- Eye(4.8)
- Liver(4.8)
- Bone marrow(4.4)
- Lung(4.4)
- Skin(4.2)
- Intestine(3.8)
- Kidney(3.6)
- Pancreas(3.6)
- Stomach(3.1)
- Heart(2.5)
- Bone(2.3)
- Lymph node(2.2)
- Adrenal gland(2.1)
- Muscle(2.1)
- Spleen(2.1)
- Thyroid gland(2.1)
- Gall bladder(2)
Primer Products
-
OriGene qPCR primer pairs and template standards for HNRNPC
-
OriGene qPCR primer pairs for HNRNPC
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNRNPC Gene
Orthologs for HNRNPC Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | HNRNPC 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | HNRPC 35 |
|
OneToMany | |
| LOC510852 34 |
|
||||
| oppossum (Monodelphis domestica) |
Mammalia | -- 35 |
|
ManyToMany | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
OneToMany | |
| dog (Canis familiaris) |
Mammalia | LOC475399 34 |
|
||
| -- 35 |
|
ManyToMany | |||
| mouse (Mus musculus) |
Mammalia | Hnrnpc 34 16 |
|
||
| Ralyl 35 |
|
ManyToMany | |||
| rat (Rattus norvegicus) |
Mammalia | Hnrnpc 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | -- 35 |
|
OneToMany | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | Str.6109 34 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | LOC397793 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | zgc:55733 35 |
|
ManyToMany | |
| hnrnpc 35 |
|
ManyToMany | |||
| zgc55733 34 |
|
||||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.3917 34 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | CG42458 35 |
|
OneToMany |
- Species where no ortholog for HNRNPC was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for HNRNPC Gene
(10) SIMAP similar genes for HNRNPC Gene using alignment to 16 proteins:
Pseudogenes.org Pseudogenes for HNRNPC Gene
Variants for HNRNPC Gene
| SNP ID | Clin | Chr 14 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000034143 | -- | 21,253,416(+) | TTGCA(C/G)TGAGA | intron-variant | |
| rs1000066094 | -- | 21,258,209(+) | AACAT(A/G)GTGAA | intron-variant | |
| rs1000067378 | -- | 21,259,758(+) | ATCTC(C/T)TACTT | intron-variant | |
| rs1000077475 | -- | 21,257,969(+) | ACATA(C/T)ACACA | intron-variant | |
| rs1000102943 | -- | 21,208,836(+) | AACCC(C/T)ACCAT | downstream-variant-500B, upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv1560508 | CNV | insertion | 17803354 |
| esv2656744 | CNV | deletion | 23128226 |
| esv2748453 | CNV | deletion | 23290073 |
| esv3335931 | CNV | insertion | 20981092 |
| esv3633707 | CNV | loss | 21293372 |
| nsv1113621 | CNV | deletion | 24896259 |
| nsv509527 | CNV | insertion | 20534489 |
| nsv974313 | CNV | duplication | 23825009 |
| nsv983803 | CNV | duplication | 23825009 |
Residual Variation Intolerance Score:
37.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.26;
5.73% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for HNRNPC Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HNRNPC
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HNRNPC Gene
Disorders for HNRNPC Gene
Relevant External Links for HNRNPC
No disorders were found for HNRNPC Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNRNPC Gene
Publications for HNRNPC Gene
- Regulation of urokinase receptor mRNA stability by hnRNP C in lung epithelial cells. (PMID: 16010978) Shetty S. (Mol. Cell. Biochem. 2005) 3 4 22 64
- Heterogeneous nuclear ribonucleoprotein C modulates translation of c- myc mRNA in a cell cycle phase-dependent manner. (PMID: 12509468) Kim J.H. … Jang S.K. (Mol. Cell. Biol. 2003) 3 4 22 64
- Basal and hydrogen peroxide stimulated sites of phosphorylation in heterogeneous nuclear ribonucleoprotein C1/C2. (PMID: 12564933) Stone J.R. … Collins T. (Biochemistry 2003) 3 4 22 64
- 1H, 13C, and 15N NMR assignments and global folding pattern of the RNA-binding domain of the human hnRNP C proteins. (PMID: 1385725) Witteking M. … Mueller L. (Biochemistry 1992) 3 4 22 64
- N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions. (PMID: 25719671) Liu N. … Pan T. (Nature 2015) 3 4 64
Products for HNRNPC Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Custom Antibody ServicesOriGene Antibodies for HNRNPC
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for MassSpec and Protein Over-expression Lysates for HNRNPC
- Origene Custom Protein Services for HNRNPC
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for HNRNPC
- Browse OriGene Inhibitory RNA Products For HNRNPC
- OriGene qPCR primer pairs and template standards for HNRNPC
- OriGene qPCR primer pairs for HNRNPC
- OriGene CRISPR knockouts for HNRNPC
- OriGene ORF clones in human for HNRNPC
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HNRNPC
- GenScript: Next-day shipping cDNA ORF clone for HNRNPC in any vector
- GenScript Custom Purified and Recombinant Proteins Services for HNRNPC
- GenScript Custom Assay Services for HNRNPC
- GenScript Custom overexpressing Cell Line Services for HNRNPC
- GenScript: Design CRISPR guide RNA sequences for HNRNPC
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HNRNPC
- Cell Signaling Technology (CST) Antibodies for HNRNPC (hnRNP C1/C2)
- Search for Antibodies & Assays
- Sino Biological Human cDNA Clone for HNRNPC
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals Antibodies for HNRNPC
- Novus Biologicals proteins and lysates for HNRNPC
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- ProSpec Recombinant Proteins for HNRNPC
- Addgene plasmids for HNRNPC
- antibodies-online Antibodies for HNRNPC: See all 73
- antibodies-online Kits for HNRNPC: See all 23
- antibodies-online Proteins for HNRNPC: See all 8
- Search antibodies-online for peptides
- GeneTex HNRNPC antibody for HNRNPC
- Search GeneTex for Proteins for HNRNPC
- ViGene Biosciences adenoviral particle packaged cDNA for HNRNPC gene
- ViGene Biosciences lentiviral particle packaged cDNA for HNRNPC gene
- ViGene Biosciences ready-to-package AAV shRNAs for HNRNPC gene
- Search ViGene Biosciences for HNRNPC
- Santa Cruz Biotechnology (SCBT) Antibodies for HNRNPC
- Search Santa Cruz Biotechnology (SCBT) for HNRNPC siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for HNRNPC
- Cyagen custom Knockout/knockin (KOKI) mouse models for HNRNPC
- VectorBuilder custom plasmid, inducible vectors for HNRNPC
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HNRNPC
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HNRNPC Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer