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HNRNPA3P1 Gene(Pseudogene)

Heterogeneous Nuclear Ribonucleoprotein A3 Pseudogene 1

GCID:
GC10M043787
GIFtS:
25
Genes Participants
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Aliases for HNRNPA3P1 Gene

Aliases for HNRNPA3P1 Gene

  • Heterogeneous Nuclear Ribonucleoprotein A3 Pseudogene 1 2 3 5
  • Heterogeneous Nuclear Ribonucleoprotein A3 2
  • HNRPA3P1 3
  • D10S102 3
  • HNRPA3 3
  • FBRNP 3

External Ids for HNRNPA3P1 Gene

Previous HGNC Symbols for HNRNPA3P1 Gene

  • HNRPA3
  • HNRPA3P1

Previous GeneCards Identifiers for HNRNPA3P1 Gene

  • GC10M043602
  • GC10M044282

Summaries for HNRNPA3P1 Gene

Entrez Gene Summary for HNRNPA3P1 Gene

  • This locus shares sequence similarity with heterogeneous nuclear ribonuclear proteins and represents an apparent transcribed pseudogene of the HNRPA3 gene, which maps to chromosome 2. [provided by RefSeq, Jul 2008]

GeneCards Summary for HNRNPA3P1 Gene

HNRNPA3P1 (Heterogeneous Nuclear Ribonucleoprotein A3 Pseudogene 1) is a Pseudogene. Among its related pathways are mRNA Splicing - Major Pathway.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNRNPA3P1 Gene

Genomics for HNRNPA3P1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HNRNPA3P1 Gene

Enhancers for HNRNPA3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G043392 2.1 FANTOM5 Ensembl ENCODE dbSUPER 12.2 +388.7 388728 18.3 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF32 ZNF37BP LOC105378272 ENSG00000273008 BMS1 ZNF239 ZNF32-AS1 HNRNPA3P1 ZNF32-AS2 RASGEF1A
GH10G043109 1.3 Ensembl ENCODE 12.2 +679.6 679631 1.7 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ZBTB7B GLIS2 CBX5 CSGALNACT2 BMS1 EIF3LP2 HNRNPA3P1 PIR60596 GC10M043121
GH10G044752 1.3 Ensembl ENCODE 11.3 -962.6 -962574 1.2 PKNOX1 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 KLF7 FOS ZNF263 SP3 WASHC2C FAM21FP HNRNPA3P1 GC10P044773 GC10P044715
GH10G044258 1.3 Ensembl ENCODE 11.3 -470.2 -470248 4.2 PKNOX1 FOXA2 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 TCF12 HNRNPA3P1 ENSG00000237590 PIR37397
GH10G043793 0.8 FANTOM5 ENCODE 0.7 -3.5 -3467 0.2 CTCF NRF1 CEBPB LINC00619 HNRNPA3P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HNRNPA3P1 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the HNRNPA3P1 gene promoter:

Genomic Location for HNRNPA3P1 Gene

Chromosome:
10
Start:
43,787,412 bp from pter
End:
43,790,417 bp from pter
Size:
3,006 bases
Orientation:
Minus strand

Genomic View for HNRNPA3P1 Gene

Genes around HNRNPA3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNRNPA3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNRNPA3P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HNRNPA3P1 Gene

Proteins for HNRNPA3P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HNRNPA3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNRNPA3P1 Gene

Domains & Families for HNRNPA3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNRNPA3P1 Gene

Function for HNRNPA3P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for HNRNPA3P1 Gene

GenomeRNAi human phenotypes for HNRNPA3P1:
genes like me logo Genes that share phenotypes with HNRNPA3P1: view

miRNA for HNRNPA3P1 Gene

miRTarBase miRNAs that target HNRNPA3P1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HNRNPA3P1 Gene

Localization for HNRNPA3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HNRNPA3P1 Gene

Pathways & Interactions for HNRNPA3P1 Gene

SuperPathways for HNRNPA3P1 Gene

PathCards logo More details on SuperPathways for HNRNPA3P1
SuperPathway Contained pathways
1 mRNA Splicing - Major Pathway
mRNA Processing
.41
genes like me logo Genes that share pathways with HNRNPA3P1: view

Pathways by source for HNRNPA3P1 Gene

1 BioSystems pathway for HNRNPA3P1 Gene

Interacting Proteins for HNRNPA3P1 Gene

Gene Ontology (GO) - Biological Process for HNRNPA3P1 Gene

None

No data available for SIGNOR curated interactions for HNRNPA3P1 Gene

Drugs & Compounds for HNRNPA3P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HNRNPA3P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HNRNPA3P1 Gene

(2) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HNRNPA3P1 Gene

Heterogeneous nuclear ribonucleoprotein A3 pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HNRNPA3P1 Gene

No ASD Table

Relevant External Links for HNRNPA3P1 Gene

GeneLoc Exon Structure for
HNRNPA3P1
ECgene alternative splicing isoforms for
HNRNPA3P1

Expression for HNRNPA3P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HNRNPA3P1 Gene

mRNA expression in normal human tissues for HNRNPA3P1 Gene
mRNA expression by BioGPS for HNRNPA3P1 GenemRNA expression by GTEx for HNRNPA3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of HNRNPA3P1 Gene:

HNRNPA3P1

SOURCE GeneReport for Unigene cluster for HNRNPA3P1 Gene:

Hs.632956
genes like me logo Genes that share expression patterns with HNRNPA3P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNRNPA3P1 Gene

Orthologs for HNRNPA3P1 Gene

Evolution for HNRNPA3P1 Gene

ENSEMBL:
Gene Tree for HNRNPA3P1 (if available)
TreeFam:
Gene Tree for HNRNPA3P1 (if available)

No data available for Orthologs for HNRNPA3P1 Gene

Paralogs for HNRNPA3P1 Gene

No data available for Paralogs for HNRNPA3P1 Gene

Variants for HNRNPA3P1 Gene

Sequence variations from dbSNP and Humsavar for HNRNPA3P1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000119716 -- 43,792,131(+) CCTGC(A/C)CAGGG intron-variant, upstream-variant-2KB
rs1000210144 -- 43,791,009(+) CTCAC(A/T)GGTCT intron-variant, upstream-variant-2KB
rs1000540909 -- 43,792,212(+) GTCAA(C/T)ACAAA intron-variant, upstream-variant-2KB
rs1000571802 -- 43,792,073(+) GGAAT(A/T)TACCT intron-variant, upstream-variant-2KB
rs1002012350 -- 43,789,519(+) CCACC(A/C)CCATA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HNRNPA3P1 Gene

Variant ID Type Subtype PubMed ID
nsv947899 CNV duplication 23825009

Relevant External Links for HNRNPA3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HNRNPA3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNRNPA3P1 Gene

Disorders for HNRNPA3P1 Gene

Relevant External Links for HNRNPA3P1

Genetic Association Database (GAD)
HNRNPA3P1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HNRNPA3P1

No disorders were found for HNRNPA3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNRNPA3P1 Gene

Publications for HNRNPA3P1 Gene

  1. Identification and characterization of a cDNA, which is highly homologous to the ribonucleoprotein gene, from a locus (D10S102) closely linked to MEN2 (multiple endocrine neoplasia type 2). (PMID: 8101480) Takiguchi S. … Nakamura Y. (Cytogenet. Cell Genet. 1993) 2 3 64
  2. Genome-wide association study link novel loci to endometriosis. (PMID: 23472165) Albertsen H.M. … Ward K. (PLoS ONE 2013) 3 64
  3. Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. (PMID: 21378990) Schunkert H. … Samani N.J. (Nat. Genet. 2011) 46 64
  4. Network organization of the human autophagy system. (PMID: 20562859) Behrends C. … Harper J.W. (Nature 2010) 3 64
  5. Deregulated expression of hnRNP A/B proteins in human non-small cell lung cancer: parallel assessment of protein and mRNA levels in paired tumour/non-tumour tissues. (PMID: 20716340) Boukakis G. … Guialis A. (BMC Cancer 2010) 3 64

Products for HNRNPA3P1 Gene

Sources for HNRNPA3P1 Gene

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