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Aliases for HNRNPA3P1 Gene

Aliases for HNRNPA3P1 Gene

  • Heterogeneous Nuclear Ribonucleoprotein A3 Pseudogene 1 2 3 5
  • Heterogeneous Nuclear Ribonucleoprotein A3 2
  • HNRPA3P1 3
  • D10S102 3
  • HNRPA3 3
  • FBRNP 3

External Ids for HNRNPA3P1 Gene

Previous HGNC Symbols for HNRNPA3P1 Gene

  • HNRPA3
  • HNRPA3P1

Previous GeneCards Identifiers for HNRNPA3P1 Gene

  • GC10M043602
  • GC10M044282

Summaries for HNRNPA3P1 Gene

Entrez Gene Summary for HNRNPA3P1 Gene

  • This locus shares sequence similarity with heterogeneous nuclear ribonuclear proteins and represents an apparent transcribed pseudogene of the HNRPA3 gene, which maps to chromosome 2. [provided by RefSeq, Jul 2008]

GeneCards Summary for HNRNPA3P1 Gene

HNRNPA3P1 (Heterogeneous Nuclear Ribonucleoprotein A3 Pseudogene 1) is a Pseudogene. Among its related pathways are mRNA Splicing - Major Pathway.

Additional gene information for HNRNPA3P1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNRNPA3P1 Gene

Genomics for HNRNPA3P1 Gene

Regulatory Elements for HNRNPA3P1 Gene

Enhancers for HNRNPA3P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H043392 2.1 FANTOM5 Ensembl ENCODE dbSUPER 24.9 +388.7 388728 18 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ZNF32-AS2 BMS1 EIF3LP2 ZNF37BP ZNF33B ZNF32-AS1 HNRNPA3P1 HNRNPF ZNF32 LOC105378272
GH10H044752 1.3 Ensembl ENCODE 19.3 -962.6 -962574 1 PKNOX1 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 FOS KLF7 SP3 YY2 WASHC2C FAM21FP ZFAND4 HNRNPA3P1 RPS19P7 ANKRD54P1 RNU6-1207P OR6D1P ENSG00000227029 LINC00841
GH10H043385 1 ENCODE dbSUPER 11.3 +405.7 405680 0 PAF1 HNRNPUL1 SCRT1 SMAD5 ZBED1 ZNF501 CTBP1 MTA3 POLR2A EGR1 HNRNPF HNRNPA3P1 RASGEF1A EIF3LP2 PIR56810 FXYD4
GH10H043384 0.8 dbSUPER 11.3 +403.2 403231 4 HNRNPUL1 KLF17 MTA3 ZNF316 CTBP1 EGR1 POLR2A SCRT2 ZNF600 RUNX3 LOC105378272 HNRNPF SNORD3J ZNF487 RNU7-193P HNRNPA3P1 RASGEF1A EIF3LP2 ZNF239 PIR56810
GH10H044065 0.8 ENCODE 9.8 -275.5 -275472 1 LEF1 ZNF175 MAX FEZF1 ZNF384 ZIC2 CTBP1 GLI2 GFI1B ZBTB8A HNRNPA3P1 PIR37397 ENSG00000237590
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HNRNPA3P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HNRNPA3P1 Gene

Chromosome:
10
Start:
43,787,412 bp from pter
End:
43,790,417 bp from pter
Size:
3,006 bases
Orientation:
Minus strand

Genomic View for HNRNPA3P1 Gene

Genes around HNRNPA3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNRNPA3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNRNPA3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNRNPA3P1 Gene

Proteins for HNRNPA3P1 Gene

Post-translational modifications for HNRNPA3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNRNPA3P1 Gene

Domains & Families for HNRNPA3P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNRNPA3P1 Gene

Function for HNRNPA3P1 Gene

Phenotypes for HNRNPA3P1 Gene

GenomeRNAi human phenotypes for HNRNPA3P1:
genes like me logo Genes that share phenotypes with HNRNPA3P1: view

Animal Model Products

CRISPR Products

miRNA for HNRNPA3P1 Gene

miRTarBase miRNAs that target HNRNPA3P1

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for HNRNPA3P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HNRNPA3P1 Gene

Localization for HNRNPA3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HNRNPA3P1 Gene

Pathways & Interactions for HNRNPA3P1 Gene

SuperPathways for HNRNPA3P1 Gene

SuperPathway Contained pathways
1 mRNA Splicing - Major Pathway
genes like me logo Genes that share pathways with HNRNPA3P1: view

Pathways by source for HNRNPA3P1 Gene

1 BioSystems pathway for HNRNPA3P1 Gene

Interacting Proteins for HNRNPA3P1 Gene

Gene Ontology (GO) - Biological Process for HNRNPA3P1 Gene

None

No data available for SIGNOR curated interactions for HNRNPA3P1 Gene

Drugs & Compounds for HNRNPA3P1 Gene

No Compound Related Data Available

Transcripts for HNRNPA3P1 Gene

mRNA/cDNA for HNRNPA3P1 Gene

(2) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HNRNPA3P1 Gene

Heterogeneous nuclear ribonucleoprotein A3 pseudogene 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for HNRNPA3P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HNRNPA3P1 Gene

No ASD Table

Relevant External Links for HNRNPA3P1 Gene

GeneLoc Exon Structure for
HNRNPA3P1
ECgene alternative splicing isoforms for
HNRNPA3P1

Expression for HNRNPA3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HNRNPA3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of HNRNPA3P1 Gene:

HNRNPA3P1

SOURCE GeneReport for Unigene cluster for HNRNPA3P1 Gene:

Hs.632956
genes like me logo Genes that share expression patterns with HNRNPA3P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNRNPA3P1 Gene

Orthologs for HNRNPA3P1 Gene

Evolution for HNRNPA3P1 Gene

ENSEMBL:
Gene Tree for HNRNPA3P1 (if available)
TreeFam:
Gene Tree for HNRNPA3P1 (if available)

No data available for Orthologs for HNRNPA3P1 Gene

Paralogs for HNRNPA3P1 Gene

No data available for Paralogs for HNRNPA3P1 Gene

Variants for HNRNPA3P1 Gene

Sequence variations from dbSNP and Humsavar for HNRNPA3P1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000119716 -- 43,792,131(+) CCTGC(A/C)CAGGG intron-variant, upstream-variant-2KB
rs1000210144 -- 43,791,009(+) CTCAC(A/T)GGTCT intron-variant, upstream-variant-2KB
rs1000540909 -- 43,792,212(+) GTCAA(C/T)ACAAA intron-variant, upstream-variant-2KB
rs1000571802 -- 43,792,073(+) GGAAT(A/T)TACCT intron-variant, upstream-variant-2KB
rs1002012350 -- 43,789,519(+) CCACC(A/C)CCATA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HNRNPA3P1 Gene

Variant ID Type Subtype PubMed ID
nsv947899 CNV duplication 23825009

Relevant External Links for HNRNPA3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HNRNPA3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNRNPA3P1 Gene

Disorders for HNRNPA3P1 Gene

Relevant External Links for HNRNPA3P1

Genetic Association Database (GAD)
HNRNPA3P1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HNRNPA3P1

No disorders were found for HNRNPA3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNRNPA3P1 Gene

Publications for HNRNPA3P1 Gene

  1. Identification and characterization of a cDNA, which is highly homologous to the ribonucleoprotein gene, from a locus (D10S102) closely linked to MEN2 (multiple endocrine neoplasia type 2). (PMID: 8101480) Takiguchi S … Nakamura Y (Cytogenetics and cell genetics 1993) 2 3 60
  2. Genome-wide association study link novel loci to endometriosis. (PMID: 23472165) Albertsen HM … Ward K (PloS one 2013) 3 60
  3. Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease. (PMID: 21378990) Schunkert H … Samani NJ (Nature genetics 2011) 45 60
  4. Network organization of the human autophagy system. (PMID: 20562859) Behrends C … Harper JW (Nature 2010) 3 60
  5. Deregulated expression of hnRNP A/B proteins in human non-small cell lung cancer: parallel assessment of protein and mRNA levels in paired tumour/non-tumour tissues. (PMID: 20716340) Boukakis G … Guialis A (BMC cancer 2010) 3 60

Products for HNRNPA3P1 Gene

Sources for HNRNPA3P1 Gene

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