HNRNPA3P1 Gene
pseudogene GIFtS: 31
GCID: GC10M044282
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heterogeneous nuclear ribonucleoprotein A3 pseudogene 1(Previous name: heterogeneous nuclear ribonucleoprotein A3 )
(Previous symbols: HNRPA3, HNRPA3P1)
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Aliases
for HNRNPA3P1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| Heterogeneous Nuclear Ribonucleoprotein A3 Pseudogene 11 2 | | D10S1021 2 | | FBRNP1 2 | | HNRPA31 2 | | HNRPA3P11 2 | | Heterogeneous Nuclear Ribonucleoprotein A31 |
| External Ids: | HGNC: 137291 | Entrez Gene: 101512 | Ensembl: ENSG000002267907 | | ORGUL members: | |
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| NONCODE:n405569 | |
Export aliases for HNRNPA3P1 gene to outside databasesPrevious GC identifer: GC10M043602
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Summaries
for HNRNPA3P1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for HNRNPA3P1:
This locus shares sequence similarity with heterogeneous nuclear ribonuclear proteins and represents an apparenttranscribed pseudogene of the HNRPA3 gene, which maps to chromosome 2. (provided by RefSeq, Jul 2008)
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Genomic Views
for HNRNPA3P1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000010.10 NC_018921.1 NT_033985.7
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the HNRNPA3P1 gene promoter:
AREB6 RP58 AML1a p53 POU2F1 POU2F1a ZIC2/Zic2 Evi-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for HNRNPA3P1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HNRNPA3P1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 10q11.21 Ensembl cytogenetic band: 10q11.21 HGNC cytogenetic band: 10q11.21HNRNPA3P1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10M044282: view genomic region
(about GC identifiers)
Start:
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44,282,860 bp from pter |
End:
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44,285,865 bp from pter |
Size:
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3,006 bases |
Orientation:
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minus strand |
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Proteins
for HNRNPA3P1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for HNRNPA3P1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| -- |
Function
for HNRNPA3P1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HNRNPA3P1 |
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Pathways & Interactions
for HNRNPA3P1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Unified GeneCards pathways About this table 
See pathways by source
| Super-pathway | contained gene-specific pathways |
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| 1 | mRNA Splicing - Major Pathway | |
1  BioSystems Pathway for HNRNPA3P1
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HNRNPA3P1
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Drugs & Compounds
for HNRNPA3P1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
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 Browse Tocris compounds for HNRNPA3P1
Search CenterWatch for drugs/clinical trials and news about HNRNPA3P1
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Transcripts
for HNRNPA3P1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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Unigene Cluster for HNRNPA3P1: Heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 Hs.632956 [show with all ESTs]Unigene Representative Sequence: S639122 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000401429 ENST00000423264(uc010qfe.1)
Additional cDNA sequence: NR_002726.2 S63912.1 3 DOTS entries: DT.121271394 DT.91773419 DT.95265959 6 AceView cDNA sequences: BV183662 BV183663 BV199219 S63912 CB049972 AW383404
GeneLoc Exon Structure
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Expression
for HNRNPA3P1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| HNRNPA3P1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GAAATTGGCC
About this image
Genevestigator expression for HNRNPA3P1
SOURCE GeneReport for Unigene cluster: Hs.632956
SABiosciences Custom PCR Arrays for HNRNPA3P1
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for HNRNPA3P1
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat HNRNPA3P1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat HNRNPA3P1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat HNRNPA3P1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HNRNPA3P1 |
Orthologs
for HNRNPA3P1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for HNRNPA3P1 (if available)
TreeFam Gene Tree for HNRNPA3P1 (if available) |
Paralogs
for HNRNPA3P1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for HNRNPA3P1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 10 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for HNRNPA3P1 (44282860 - 44285865 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 10 variations for HNRNPA3P1
2 CNVs: 85208 75195
8 Indels: 75191 75194 85210 75193 75192 85209 75196 85211 | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for HNRNPA3P1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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HNRNPA3P1 for disorders About GeneDecksing
2  diseases for HNRNPA3P1: About MalaCardsmultiple endocrine neoplasia lung cancer
Export disorders for HNRNPA3P1 gene to outside databases
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Publications
for HNRNPA3P1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for HNRNPA3P1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with HNRNPA3P1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Identification and characterization of a cDNA, which is highly homologous to the ribonucleoprotein gene, from a locus (D10S102) closely linked to MEN2 (multiple endocrine neoplasia type 2). (PubMed id 8101480)1, 3 Takiguchi S.... Nakamura Y. (1993)
- Deregulated expression of hnRNP A/B proteins in human non-small cell lung cancer: parallel assessment of protein and mRNA levels in paired tumour/non-tumour tissues. (PubMed id 20716340)1 Boukakis G....Guialis A. (2010)
- Network organization of the human autophagy system. (PubMed id 20562859)1 Behrends C....Harper J.W. (2010)
- Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. (PubMed id 17643375)1 Jeronimo C.... Coulombe B. (2007)
- HnRNP A3 genes and pseudogenes in the vertebrate genomes. (PubMed id 15776420)1 Makeyev A.V....Bayarsaihan D. (2005)
- Heterogeneous nuclear ribonucleoprotein A3, a novel RNA trafficking response element-binding protein. (PubMed id 11886857)1 Ma A.S.W....Smith R. (2002)
- A 1.5-megabase yeast artificial chromosome contig from human chromosome 10q11.2 connecting three genetic loci (RET, D10S94, and D10S102) closely linked to the MEN2A locus. (PubMed id 8093642)1 Lairmore T.C....Donis-Keller H. (1993)
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External Searches for HNRNPA3P1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing HNRNPA3P1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing HNRNPA3P1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HNRNPA3P1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for HNRNPA3P1 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for HNRNPA3P1 gene:
Search GeneIP for patents involving HNRNPA3P1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for HNRNPA3P1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HNRNPA3P1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing HNRNPA3P1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HNRNPA3P1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat HNRNPA3P1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat HNRNPA3P1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat HNRNPA3P1 |
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 | | | HNRNPA3P1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HNRNPA3P1 |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat HNRNPA3P1 |
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