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Aliases for HNRNPA3 Gene

Aliases for HNRNPA3 Gene

  • Heterogeneous Nuclear Ribonucleoprotein A3 2 3
  • HNRPA3 3 4 6
  • HnRNP A3 3 4
  • D10S102 3 6
  • FBRNP 3 6
  • 2610510D13Rik 3

External Ids for HNRNPA3 Gene

Previous Symbols for HNRNPA3 Gene

  • HNRPA3

Summaries for HNRNPA3 Gene

GeneCards Summary for HNRNPA3 Gene

HNRNPA3 (Heterogeneous Nuclear Ribonucleoprotein A3) is a Protein Coding gene. Among its related pathways are Gene Expression and Spliceosome. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is HNRNPA0.

UniProtKB/Swiss-Prot for HNRNPA3 Gene

  • Plays a role in cytoplasmic trafficking of RNA. Binds to the cis-acting response element, A2RE. May be involved in pre-mRNA splicing.

Gene Wiki entry for HNRNPA3 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNRNPA3 Gene

Genomics for HNRNPA3 Gene

Genomic Location for HNRNPA3 Gene

177,212,228 bp from pter
177,223,959 bp from pter
11,732 bases
Plus strand

Genomic View for HNRNPA3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HNRNPA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNRNPA3 Gene

Regulatory Elements for HNRNPA3 Gene

Proteins for HNRNPA3 Gene

  • Protein details for HNRNPA3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Heterogeneous nuclear ribonucleoprotein A3
    Protein Accession:
    Secondary Accessions:
    • D3DPF4
    • Q53RW7
    • Q6URK5

    Protein attributes for HNRNPA3 Gene

    378 amino acids
    Molecular mass:
    39595 Da
    Quaternary structure:
    • Identified in the spliceosome C complex.

    Alternative splice isoforms for HNRNPA3 Gene


neXtProt entry for HNRNPA3 Gene

Proteomics data for HNRNPA3 Gene at MOPED

Post-translational modifications for HNRNPA3 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys36, Lys57, Lys73, and Lys151

Other Protein References for HNRNPA3 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for HNRNPA3 Gene

Domains for HNRNPA3 Gene

Gene Families for HNRNPA3 Gene

  • RBM :RNA binding motif (RRM) containing

Protein Domains for HNRNPA3 Gene


  • Contains 2 RRM (RNA recognition motif) domains.:
    • P51991
genes like me logo Genes that share domains with HNRNPA3: view

Function for HNRNPA3 Gene

Molecular function for HNRNPA3 Gene

UniProtKB/Swiss-Prot Function: Plays a role in cytoplasmic trafficking of RNA. Binds to the cis-acting response element, A2RE. May be involved in pre-mRNA splicing.

Gene Ontology (GO) - Molecular Function for HNRNPA3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0003723 RNA binding TAS 8101480
GO:0005515 protein binding IPI 22720776
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with HNRNPA3: view

Phenotypes for HNRNPA3 Gene

GenomeRNAi human phenotypes for HNRNPA3:
genes like me logo Genes that share phenotypes with HNRNPA3: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for HNRNPA3 Gene

Localization for HNRNPA3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HNRNPA3 Gene

Nucleus. Note=Component of ribonucleosomes.

Subcellular locations from

Jensen Localization Image for HNRNPA3 Gene COMPARTMENTS Subcellular localization image for HNRNPA3 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for HNRNPA3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 22720776
GO:0005654 nucleoplasm TAS --
GO:0030529 ribonucleoprotein complex TAS 8101480
GO:0071013 catalytic step 2 spliceosome IDA 11991638
genes like me logo Genes that share ontologies with HNRNPA3: view

Pathways for HNRNPA3 Gene

genes like me logo Genes that share pathways with HNRNPA3: view

Pathways by source for HNRNPA3 Gene

Gene Ontology (GO) - Biological Process for HNRNPA3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000398 mRNA splicing, via spliceosome TAS --
GO:0008380 RNA splicing TAS --
GO:0010467 gene expression TAS --
genes like me logo Genes that share ontologies with HNRNPA3: view

Transcripts for HNRNPA3 Gene

Unigene Clusters for HNRNPA3 Gene

Heterogeneous nuclear ribonucleoprotein A3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HNRNPA3 Gene

No ASD Table

Relevant External Links for HNRNPA3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HNRNPA3 Gene

mRNA expression in normal human tissues for HNRNPA3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for HNRNPA3 Gene

SOURCE GeneReport for Unigene cluster for HNRNPA3 Gene Hs.516539

genes like me logo Genes that share expressions with HNRNPA3: view

Orthologs for HNRNPA3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HNRNPA3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 37
  • 84 (a)
(Bos Taurus)
Mammalia -- 37
  • 99 (a)
(Canis familiaris)
Mammalia HNRNPA3 37
  • 100 (a)
(Mus musculus)
Mammalia Gm6793 37
  • 99 (a)
Gm8991 37
  • 97 (a)
Gm9242 37
  • 99 (a)
Hnrnpa3 16
(Monodelphis domestica)
Mammalia HNRNPA3 37
  • 90 (a)
(Ornithorhynchus anatinus)
Mammalia HNRNPA3 37
  • 71 (a)
(Gallus gallus)
Aves HNRNPA3 37
  • 89 (a)
(Anolis carolinensis)
Reptilia HNRNPA3 37
  • 86 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.17064 36
(Danio rerio)
Actinopterygii hnrnpa3 37
  • 83 (a)
Species with no ortholog for HNRNPA3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HNRNPA3 Gene

Gene Tree for HNRNPA3 (if available)
Gene Tree for HNRNPA3 (if available)

Paralogs for HNRNPA3 Gene

Paralogs for HNRNPA3 Gene

Selected SIMAP similar genes for HNRNPA3 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with HNRNPA3: view

Variants for HNRNPA3 Gene

Sequence variations from dbSNP and Humsavar for HNRNPA3 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs8334 -- 177,223,051(-) ATCCG(A/C)CTAAA utr-variant-3-prime, nc-transcript-variant
rs8470 -- 177,221,099(+) TCACA(C/T)ATACT utr-variant-3-prime, intron-variant, nc-transcript-variant
rs9068 -- 177,220,409(+) AATTA(A/G)TGGGT utr-variant-3-prime, intron-variant, nc-transcript-variant
rs1065388 -- 177,223,066(+) TACTT(A/T)AAAAA utr-variant-3-prime, nc-transcript-variant
rs1142940 -- 177,222,659(+) ATTAG(C/T)TGGGC utr-variant-3-prime, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HNRNPA3 Gene

Variant ID Type Subtype PubMed ID
nsv834465 CNV Loss 17160897

Relevant External Links for HNRNPA3 Gene

HapMap Linkage Disequilibrium report

Disorders for HNRNPA3 Gene

(1) University of Copenhagen DISEASES for HNRNPA3 Gene

genes like me logo Genes that share disorders with HNRNPA3: view

No data available for UniProtKB/Swiss-Prot for HNRNPA3 Gene

Publications for HNRNPA3 Gene

  1. Heterogeneous nuclear ribonucleoprotein A3, a novel RNA trafficking response element-binding protein. (PMID: 11886857) Ma A.S.W. … Smith R. (J. Biol. Chem. 2002) 2 3 4 23
  2. HnRNP A3 genes and pseudogenes in the vertebrate genomes. (PMID: 15776420) Makeyev A.V. … Bayarsaihan D. (J. Exp. Zoolog. Part A Comp. Exp. Biol. 2005) 2 3 23
  3. Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. (PMID: 11991638) Jurica M.S. … Moore M.J. (RNA 2002) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4

Products for HNRNPA3 Gene

Sources for HNRNPA3 Gene

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