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HNRNPA1L2 Gene

protein-coding   GIFtS: 43
GCID: GC13P053192

Heterogeneous Nuclear Ribonucleoprotein A1-Like 2

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Heterogeneous Nuclear Ribonucleoprotein A1-Like 21 2
HnRNP A1-Like 22 3
HnRNP Core Protein A1-Like 22 3
HNRNPA1L3

External Ids:    HGNC: 270671   Entrez Gene: 1449832   Ensembl: ENSG000001396757   UniProtKB: Q32P513   

Export aliases for HNRNPA1L2 gene to outside databases

Previous GC identifers: GC13P052092 GC13P033905


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for HNRNPA1L2 Gene:
HNRNPA1L2 (heterogeneous nuclear ribonucleoprotein A1-like 2) is a protein-coding gene. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is HNRNPA1.

UniProtKB/Swiss-Prot: RA1L2_HUMAN, Q32P51
Function: Involved in the packaging of pre-mRNA into hnRNP particles, transport of poly(A) mRNA from the nucleus
to the cytoplasm and may modulate splice site selection (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000013.10  NC_018924.2  NT_024524.15  
Regulatory elements:
   Regulatory transcription factor binding sites in the HNRNPA1L2 gene promoter:
         STAT5B   STAT1   AML1a   STAT4   STAT1beta   STAT5A   STAT1alpha   STAT2   STAT3   TGIF   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for HNRNPA1L2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat HNRNPA1L2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 13q14.3   Ensembl cytogenetic band:  13q14.3   HGNC cytogenetic band: 13q14.3

HNRNPA1L2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HNRNPA1L2 gene location

GeneLoc information about chromosome 13         GeneLoc Exon Structure

GeneLoc location for GC13P053192:  view genomic region     (about GC identifiers)

Start:
53,191,605 bp from pter      End:
53,217,919 bp from pter
Size:
26,315 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: RA1L2_HUMAN, Q32P51 (See protein sequence)
Recommended Name: Heterogeneous nuclear ribonucleoprotein A1-like 2  
Size: 320 amino acids; 34225 Da
Secondary accessions: Q5TBS2

Explore the universe of human proteins at neXtProt for HNRNPA1L2: NX_Q32P51

Explore proteomics data for HNRNPA1L2 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys15, Lys52
  • Modification sites at PhosphoSitePlus

  • See HNRNPA1L2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001011724.1  NP_001011725.1  

    ENSEMBL proteins: 
     ENSP00000350090   ENSP00000341285   ENSP00000381119  

    HNRNPA1L2 Human Recombinant Protein Products:

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    Search eBioscience for ELISAs for HNRNPA1L2 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RBM: RNA binding motif (RRM) containing

    3 InterPro protein domains:
     IPR021662 HnRNPA1
     IPR012677 Nucleotide-bd_a/b_plait
     IPR000504 RRM_dom

    Graphical View of Domain Structure for InterPro Entry Q32P51

    ProtoNet protein and cluster: Q32P51

    UniProtKB/Swiss-Prot: RA1L2_HUMAN, Q32P51
    Similarity: Contains 2 RRM (RNA recognition motif) domains


    Find genes that share domains with HNRNPA1L2           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: RA1L2_HUMAN, Q32P51
    Function: Involved in the packaging of pre-mRNA into hnRNP particles, transport of poly(A) mRNA from the nucleus
    to the cytoplasm and may modulate splice site selection (By similarity)

         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding IEA--
    GO:0003676nucleic acid binding ----
    GO:0003723RNA binding IEA--
         
    Find genes that share ontologies with HNRNPA1L2           About GenesLikeMe


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for HNRNPA1L2
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       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for HNRNPA1L2

    miRNA
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    miRTarBase miRNAs that target HNRNPA1L2:
    hsa-mir-1 (MIRT023805), hsa-mir-30a-5p (MIRT028493)

    Block miRNA regulation of human, mouse, rat HNRNPA1L2 using miScript Target Protectors
    3 qRT-PCR Assays for microRNAs that regulate HNRNPA1L2:
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    GenScript: all cDNA clones in your preferred vector (see all 2): HNRNPA1L2 (NM_001011724)
    Browse Sino Biological Human cDNA Clones
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HNRNPA1L2


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    RA1L2_HUMAN, Q32P51: Nucleus (By similarity). Cytoplasm (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005681spliceosomal complex IEA--
    GO:0005737cytoplasm IEA--

    Find genes that share ontologies with HNRNPA1L2           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for HNRNPA1L2 About    
    See pathways by source

    SuperPathContained pathways About
    1Spliceosome
    Spliceosome


    Find genes that share SuperPaths with HNRNPA1L2           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways



    1 Kegg Pathway  (Kegg details for HNRNPA1L2):
        Spliceosome

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for HNRNPA1L2
    Interactions:

        Search GeneGlobe Interaction Network for HNRNPA1L2

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    Selected Interacting proteins for HNRNPA1L2 (Q32P513 ENSP000003412854) via UniProtKB, MINT, STRING, and/or I2D (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SUFUQ9UMX13I2D: score=3 
    PIAS1O759253I2D: score=2 
    ARRB1P494073I2D: score=1 
    ESR1P033723I2D: score=1 
    GRID2O434243I2D: score=1 
    About this table

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006397mRNA processing IEA--
    GO:0008380RNA splicing IEA--
    GO:0051028mRNA transport IEA--

    Find genes that share ontologies with HNRNPA1L2           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for HNRNPA1L2 (RA1L2)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for HNRNPA1L2 gene (2 alternative transcripts): 
    NM_001011724.1  NM_001011725.1  

    Unigene Cluster for HNRNPA1L2:

    Heterogeneous nuclear ribonucleoprotein A1-like 2
    Hs.447506  [show with all ESTs]
    Unigene Representative Sequence: AK126454
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000357495(uc021rjy.1) ENST00000342657(uc001vgx.1) ENST00000398039(uc021rjx.1 uc001vgy.1 uc001vgz.1)

    miRNA
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    3 qRT-PCR Assays for microRNAs that regulate HNRNPA1L2:
    hsa-miR-649 hsa-miR-646 hsa-miR-636
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    GenScript: all cDNA clones in your preferred vector (see all 2): HNRNPA1L2 (NM_001011724)
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    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for HNRNPA1L2
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat HNRNPA1L2
      QuantiTect SYBR Green Assays in human, mouse, rat HNRNPA1L2
      QuantiFast Probe-based Assays in human, mouse, rat HNRNPA1L2

    Additional mRNA sequence: 

    AK091082.1 AK094423.1 AK123081.1 AK123159.1 AK126454.1 BC082242.1 BC108266.1 

    Selected DOTS entries (see all 42):

    DT.100725837  DT.120775453  DT.95264235  DT.121643552  DT.100725742  DT.101964105  DT.100725794  DT.95264326 
    DT.100725829  DT.100837162  DT.91741698  DT.95264225  DT.100888711  DT.120775430  DT.306096  DT.451790 
    DT.85105360  DT.91698577  DT.91741699  DT.92002214  DT.100046018  DT.100725796  DT.120775439  DT.120775455 

    Selected AceView cDNA sequences (see all 37):

    BM465470 BU074334 BM721161 BC082242 BQ425201 CB153408 BQ549643 AK091082 
    AK126454 BM679584 BG743252 BE902520 BQ549161 AA169363 BE899301 AL598686 
    AK123159 BG757899 AK094423 BM710503 BX487651 BG774672 BM716367 BF976634 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    HNRNPA1L2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    HNRNPA1L2 Expression
    About this image

    HNRNPA1L2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    HNRNPA1L2 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.447506
        Custom PCR Arrays for HNRNPA1L2
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HNRNPA1L2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for HNRNPA1L2 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Gm58031 , 5 predicted gene 58031, 5 90.21(n)1
    93.12(a)1
      15 (8.54 cM)5
    5450911  NM_001165971.11  NP_001159443.11 
     227138685 
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    77(a)
    1 → many
    2(71258665-71268894)


    ENSEMBL Gene Tree for HNRNPA1L2 (if available)
    TreeFam Gene Tree for HNRNPA1L2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for HNRNPA1L2 gene
    HNRNPA12  HNRNPD2  HNRNPDL2  HNRNPA32  HNRNPA02  HNRNPAB2  HNRNPA2B12  
    13 SIMAP similar genes for HNRNPA1L2 using alignment to 1 protein entry:     RA1L2_HUMAN:
    HNRPA1    D10S102    HNRNPA2B1    HNRNPA1    HNRNPA0    HNRNPA3
    HNRNPAB    HNRPA3    HNRNPD    HNRNPDL    MSI1    DAZAP1
    MSI2

    Find genes that share paralogs with HNRNPA1L2           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for HNRNPA1L2 (see all 579)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 13 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1462575381,2
    --53189747(+) ATTGCA/GCAATA 2 -- us2k10--------
    rs1147294571,2
    C,F--53189770(+) TCAATA/CACAAT 2 -- us2k11Minor allele frequency- C:0.02WA 118
    rs1392832351,2
    --53189814(+) GAATTG/TTTTGT 2 -- us2k10--------
    rs740873581,2
    C,F--53190034(+) TAGCAA/GCTCTC 2 -- us2k12Minor allele frequency- G:0.07WA 120
    rs1819465091,2
    --53190036(+) GCAACC/TCTCTG 2 -- us2k10--------
    rs1858486011,2
    --53190120(+) GGCCCC/TGTGAC 2 -- us2k10--------
    rs757683171,2
    C--53190150(+) TGAAAC/TGAAAG 2 -- us2k10--------
    rs1465675591,2
    --53190316(+) CACGAC/GGTCAA 2 -- us2k10--------
    rs1903709791,2
    --53190343(+) TGGCCA/GATGTG 2 -- us2k10--------
    rs1810323871,2
    --53190365(+) TCTCTA/CCTAAA 2 -- us2k10--------

    HapMap Linkage Disequilibrium report for HNRNPA1L2 (53191605 - 53217919 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for HNRNPA1L2:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv900087CNV Loss21882294
    dgv1588n71CNV Loss21882294
    nsv819201CNV Gain19587683
    nsv820041CNV Gain19587683

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for HNRNPA1L2 gene, integrated from 10 sources (see all 15):
    (articles sorted by number of sources associating them with HNRNPA1L2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    3. Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (J. Proteome Res. 2012)
    4. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    5. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    6. Viral immune modulators perturb the human molecular network by common and unique strategies. (PubMed id 22810585)1 Pichlmair A....Superti-Furga G. (Nature 2012)
    7. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    8. Characterization of the protein ubiquitination response induced by Doxorubicin. (PubMed id 22536838)1 Mandili G....Turrini F. (FEBS J. 2012)
    9. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    10. Identification of proteins associated with ligand-activated estrogen receptor I+ in human breast cancer cell nuclei by tandem affinity purification and nano LC-MS/MS. (PubMed id 21182205)1 Tarallo R....Weisz A. (Proteomics 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 144983 HGNC: 27067 AceView: LOC144983 Ensembl:ENSG00000139675 euGenes: HUgn144983
    ECgene: HNRNPA1L2 Kegg: 144983 H-InvDB: HNRNPA1L2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for HNRNPA1L2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for HNRNPA1L2 gene:
    Search GeneIP for patents involving HNRNPA1L2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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