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Aliases for HNF4A-AS1 Gene

Subcategory (RNA class) for HNF4A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HNF4A-AS1 Gene

  • HNF4A Antisense RNA 1 2 3 5
  • Uc002xlx 3

External Ids for HNF4A-AS1 Gene

Previous GeneCards Identifiers for HNF4A-AS1 Gene

  • GC20M043001

Summaries for HNF4A-AS1 Gene

GeneCards Summary for HNF4A-AS1 Gene

HNF4A-AS1 (HNF4A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HNF4A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF4A-AS1 Gene

Genomics for HNF4A-AS1 Gene

GeneHancer (GH) Regulatory Elements for HNF4A-AS1 Gene

Promoters and enhancers for HNF4A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I044392 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.9 943 4.9 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 PAF1 SP5 NFYC GC20P044393 HNF4A-AS1 HNF4A LINC01430 LINC01620 OSER1-AS1
GH20I044388 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +7.0 6985 1.1 HDGF PKNOX1 ATF1 ARID4B SIN3A ZNF2 ZNF48 YY1 GTF3C2 ELK1 ENSG00000233376 HNF4A-AS1 HNF4A LOC105372629
GH20I044384 Enhancer 1.1 ENCODE dbSUPER 0.4 +10.7 10695 1.3 ELF3 ATF1 FOXA2 ARID4B BATF IRF4 DNMT3B ZNF48 ZSCAN9 RAD21 FITM2 LINC01430 LINC01620 IFT52 OSER1-AS1 OSER1 ENSG00000233376 HNF4A-AS1 HNF4A LOC105372629
GH20I044390 Enhancer 0.3 dbSUPER 0.8 +4.3 4348 0.8 BCOR ENSG00000233376 GC20P044393 LINC01430 LINC01620 HNF4A-AS1 HNF4A LOC105372629
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HNF4A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HNF4A-AS1 Gene

Genomic Locations for HNF4A-AS1 Gene
chr20:44,372,746-44,395,706
(GRCh38/hg38)
Size:
22,961 bases
Orientation:
Minus strand
chr20:43,001,386-43,024,346
(GRCh37/hg19)

Genomic View for HNF4A-AS1 Gene

Genes around HNF4A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNF4A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNF4A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNF4A-AS1 Gene

Proteins for HNF4A-AS1 Gene

Post-translational modifications for HNF4A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNF4A-AS1 Gene

Domains & Families for HNF4A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNF4A-AS1 Gene

Function for HNF4A-AS1 Gene

Phenotypes From GWAS Catalog for HNF4A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF4A-AS1 Gene

Localization for HNF4A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HNF4A-AS1 Gene

Pathways & Interactions for HNF4A-AS1 Gene

SuperPathways for HNF4A-AS1 Gene

No Data Available

Interacting Proteins for HNF4A-AS1 Gene

Gene Ontology (GO) - Biological Process for HNF4A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HNF4A-AS1 Gene

Drugs & Compounds for HNF4A-AS1 Gene

No Compound Related Data Available

Transcripts for HNF4A-AS1 Gene

mRNA/cDNA for HNF4A-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HNF4A-AS1 Gene

No ASD Table

Relevant External Links for HNF4A-AS1 Gene

GeneLoc Exon Structure for
HNF4A-AS1
ECgene alternative splicing isoforms for
HNF4A-AS1

Expression for HNF4A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HNF4A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HNF4A-AS1 Gene

This gene is overexpressed in Liver (x38.4), Kidney - Cortex (x7.1), and Small Intestine - Terminal Ileum (x7.0).
genes like me logo Genes that share expression patterns with HNF4A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNF4A-AS1 Gene

Orthologs for HNF4A-AS1 Gene

Evolution for HNF4A-AS1 Gene

ENSEMBL:
Gene Tree for HNF4A-AS1 (if available)
TreeFam:
Gene Tree for HNF4A-AS1 (if available)

No data available for Orthologs for HNF4A-AS1 Gene

Paralogs for HNF4A-AS1 Gene

No data available for Paralogs for HNF4A-AS1 Gene

Variants for HNF4A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HNF4A-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000108655 -- 44,392,261(-) G/A intron_variant
rs1000245827 -- 44,382,017(-) T/G intron_variant
rs1000303293 -- 44,379,890(-) T/C intron_variant
rs1000462745 -- 44,383,599(-) T/G intron_variant
rs1000473674 -- 44,388,171(-) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HNF4A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1057847 CNV loss 25217958
nsv586065 CNV gain 21841781

Additional Variant Information for HNF4A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HNF4A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNF4A-AS1 Gene

Disorders for HNF4A-AS1 Gene

Additional Disease Information for HNF4A-AS1

No disorders were found for HNF4A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNF4A-AS1 Gene

Publications for HNF4A-AS1 Gene

  1. Identification of expressed and conserved human noncoding RNAs. (PMID: 24344320) Nielsen MM … Pedersen JS (RNA (New York, N.Y.) 2014) 2 3 58

Products for HNF4A-AS1 Gene

Sources for HNF4A-AS1 Gene

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