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Aliases for HNF4A-AS1 Gene

Subcategory (RNA class) for HNF4A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HNF4A-AS1 Gene

  • HNF4A Antisense RNA 1 2 3 5
  • Uc002xlx 3

External Ids for HNF4A-AS1 Gene

Previous GeneCards Identifiers for HNF4A-AS1 Gene

  • GC20M043001

Summaries for HNF4A-AS1 Gene

GeneCards Summary for HNF4A-AS1 Gene

HNF4A-AS1 (HNF4A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF4A-AS1 Gene

Genomics for HNF4A-AS1 Gene

Regulatory Elements for HNF4A-AS1 Gene

Enhancers for HNF4A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F044392 1.6 FANTOM5 Ensembl ENCODE 0.8 +0.9 944 4.9 MLX ARID4B DMAP1 YY1 SLC30A9 PAF1 SP5 NFYC ZHX2 MXD4 HNF4A OSER1 LINC01430 LINC01620 OSER1-AS1 HNF4A-AS1 GC20P044393
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HNF4A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HNF4A-AS1 Gene

44,372,746 bp from pter
44,395,706 bp from pter
22,961 bases
Minus strand

Genomic View for HNF4A-AS1 Gene

Genes around HNF4A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNF4A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNF4A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNF4A-AS1 Gene

Proteins for HNF4A-AS1 Gene

Post-translational modifications for HNF4A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNF4A-AS1 Gene

Domains & Families for HNF4A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNF4A-AS1 Gene

Function for HNF4A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF4A-AS1 Gene

Localization for HNF4A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HNF4A-AS1 Gene

Pathways & Interactions for HNF4A-AS1 Gene

SuperPathways for HNF4A-AS1 Gene

No Data Available

Interacting Proteins for HNF4A-AS1 Gene

Gene Ontology (GO) - Biological Process for HNF4A-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HNF4A-AS1 Gene

Transcripts for HNF4A-AS1 Gene

mRNA/cDNA for HNF4A-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HNF4A-AS1 Gene

No ASD Table

Relevant External Links for HNF4A-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HNF4A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HNF4A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HNF4A-AS1 Gene

This gene is overexpressed in Liver (x38.4), Kidney - Cortex (x7.1), and Small Intestine - Terminal Ileum (x7.0).
genes like me logo Genes that share expression patterns with HNF4A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HNF4A-AS1 Gene

Orthologs for HNF4A-AS1 Gene

Evolution for HNF4A-AS1 Gene

Gene Tree for HNF4A-AS1 (if available)
Gene Tree for HNF4A-AS1 (if available)

No data available for Orthologs for HNF4A-AS1 Gene

Paralogs for HNF4A-AS1 Gene

No data available for Paralogs for HNF4A-AS1 Gene

Variants for HNF4A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HNF4A-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10626048 -- 44,381,044(+) TTTGA(-/TTTGA)CCTCT intron-variant
rs111238037 -- 44,378,581(+) TTAAA(C/T)GTACA intron-variant
rs111244987 -- 44,383,489(+) AAATA(C/T)TCTGA intron-variant
rs111391347 -- 44,388,644(+) TTGGT(G/T)AAGTC intron-variant
rs111441671 -- 44,377,699(+) CAGGT(-/AA)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HNF4A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1057847 CNV loss 25217958
nsv586065 CNV gain 21841781

Relevant External Links for HNF4A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNF4A-AS1 Gene

Disorders for HNF4A-AS1 Gene

Relevant External Links for HNF4A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HNF4A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNF4A-AS1 Gene

Publications for HNF4A-AS1 Gene

  1. Identification of expressed and conserved human noncoding RNAs. (PMID: 24344320) Nielsen M.M. … Pedersen J.S. (RNA 2014) 2 3 64

Products for HNF4A-AS1 Gene

Sources for HNF4A-AS1 Gene

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