Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HNF4A-AS1 Gene

Subcategory (RNA class) for HNF4A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HNF4A-AS1 Gene

  • HNF4A Antisense RNA 1 2 3 5
  • Uc002xlx 3

External Ids for HNF4A-AS1 Gene

Previous GeneCards Identifiers for HNF4A-AS1 Gene

  • GC20M043001

Summaries for HNF4A-AS1 Gene

GeneCards Summary for HNF4A-AS1 Gene

HNF4A-AS1 (HNF4A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HNF4A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF4A-AS1 Gene

Genomics for HNF4A-AS1 Gene

Regulatory Elements for HNF4A-AS1 Gene

Enhancers for HNF4A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H044392 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +0.9 944 4.9 FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 PAF1 SP5 ZHX2 MXD4 HNF4A OSER1 LINC01430 LINC01620 OSER1-AS1 GC20P044393 HNF4A-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HNF4A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HNF4A-AS1 Gene

Genomic Locations for HNF4A-AS1 Gene
22,961 bases
Minus strand

Genomic View for HNF4A-AS1 Gene

Genes around HNF4A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNF4A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNF4A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNF4A-AS1 Gene

Proteins for HNF4A-AS1 Gene

Post-translational modifications for HNF4A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNF4A-AS1 Gene

Domains & Families for HNF4A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNF4A-AS1 Gene

Function for HNF4A-AS1 Gene

Phenotypes From GWAS Catalog for HNF4A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF4A-AS1 Gene

Localization for HNF4A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HNF4A-AS1 Gene

Pathways & Interactions for HNF4A-AS1 Gene

SuperPathways for HNF4A-AS1 Gene

No Data Available

Interacting Proteins for HNF4A-AS1 Gene

Gene Ontology (GO) - Biological Process for HNF4A-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HNF4A-AS1 Gene

Drugs & Compounds for HNF4A-AS1 Gene

No Compound Related Data Available

Transcripts for HNF4A-AS1 Gene

mRNA/cDNA for HNF4A-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HNF4A-AS1 Gene

No ASD Table

Relevant External Links for HNF4A-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HNF4A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HNF4A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HNF4A-AS1 Gene

This gene is overexpressed in Liver (x38.4), Kidney - Cortex (x7.1), and Small Intestine - Terminal Ileum (x7.0).
genes like me logo Genes that share expression patterns with HNF4A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNF4A-AS1 Gene

Orthologs for HNF4A-AS1 Gene

Evolution for HNF4A-AS1 Gene

Gene Tree for HNF4A-AS1 (if available)
Gene Tree for HNF4A-AS1 (if available)

No data available for Orthologs for HNF4A-AS1 Gene

Paralogs for HNF4A-AS1 Gene

No data available for Paralogs for HNF4A-AS1 Gene

Variants for HNF4A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HNF4A-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000108655 -- 44,392,261(+) TGTGA(A/G)GAAAC intron-variant
rs1000245827 -- 44,382,017(+) AAAGG(G/T)CCTAT intron-variant
rs1000303293 -- 44,379,890(+) CACCA(C/T)GCCCG intron-variant
rs1000462745 -- 44,383,599(+) CAGGC(G/T)GGAGT intron-variant
rs1000473674 -- 44,388,171(+) GCAGC(C/G)TCCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HNF4A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv586065 CNV gain 21841781
nsv1057847 CNV loss 25217958

Relevant External Links for HNF4A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNF4A-AS1 Gene

Disorders for HNF4A-AS1 Gene

Relevant External Links for HNF4A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HNF4A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNF4A-AS1 Gene

Publications for HNF4A-AS1 Gene

  1. Identification of expressed and conserved human noncoding RNAs. (PMID: 24344320) Nielsen MM … Pedersen JS (RNA (New York, N.Y.) 2014) 2 3 60

Products for HNF4A-AS1 Gene

Sources for HNF4A-AS1 Gene

Loading form....