Aliases for HNF4A Gene
Aliases for HNF4A Gene
External Ids for HNF4A Gene
- HGNC: 5024
- Entrez Gene: 3172
- Ensembl: ENSG00000101076
- OMIM: 600281
- UniProtKB: P41235
Previous HGNC Symbols for HNF4A Gene
- TCF14
- MODY
- MODY1
Previous GeneCards Identifiers for HNF4A Gene
- GC20P042758
- GC20P043668
- GC20P043715
- GC20P042463
- GC20P042984
- GC20P039720
Summaries for HNF4A Gene
-
The protein encoded by this gene is a nuclear transcription factor which binds DNA as a homodimer. The encoded protein controls the expression of several genes, including hepatocyte nuclear factor 1 alpha, a transcription factor which regulates the expression of several hepatic genes. This gene may play a role in development of the liver, kidney, and intestines. Mutations in this gene have been associated with monogenic autosomal dominant non-insulin-dependent diabetes mellitus type I. Alternative splicing of this gene results in multiple transcript variants encoding several different isoforms. [provided by RefSeq, Apr 2012]
GeneCards Summary for HNF4A Gene
HNF4A (Hepatocyte Nuclear Factor 4 Alpha) is a Protein Coding gene. Diseases associated with HNF4A include Mody, Type I and Fanconi Renotubular Syndrome 4, With Maturity-Onset Diabetes Of The Young. Among its related pathways are Mesodermal Commitment Pathway and Regulation of beta-cell development. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and sequence-specific DNA binding. An important paralog of this gene is HNF4G.
UniProtKB/Swiss-Prot for HNF4A Gene
-
Transcriptionally controlled transcription factor. Binds to DNA sites required for the transcription of alpha 1-antitrypsin, apolipoprotein CIII, transthyretin genes and HNF1-alpha. May be essential for development of the liver, kidney and intestine.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF4A Gene
Genomics for HNF4A Gene
Regulatory Elements for HNF4A Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH20G044421 | 1.3 | ENCODE dbSUPER | 20 | +73.8 | 73825 | 15.2 | HNRNPUL1 PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 YBX1 YY1 SLC30A9 | HNF4A LOC105372629 FITM2 LINC01620 LINC01430 PKIG MIR3646 |
| GH20G044392 | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 14.4 | +39.1 | 39063 | 4.9 | FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 PAF1 SP5 ZHX2 MXD4 | HNF4A LINC01620 LINC01430 OSER1-AS1 GC20P044393 HNF4A-AS1 |
| GH20G044397 | 1.6 | Ensembl ENCODE dbSUPER | 8.7 | +53.6 | 53555 | 22.8 | HDGF PKNOX1 FOXA2 MLX ARNT CREB3L1 ZFP64 ARID4B YBX1 DMAP1 | IFT52 FITM2 LINC01620 LINC01430 HNF4A OSER1-AS1 MIR3646 |
| GH20G044324 | 0.5 | ENCODE | 12.2 | -31.2 | -31160 | 0.5 | STAT1 POLR2A SMARCA4 ZIC2 | HNF4A LOC105372629 OSER1 R3HDML FITM2 |
| GH20G044467 | 1 | FANTOM5 ENCODE | 4.7 | +111.7 | 111673 | 0.3 | MAX YBX1 RAD21 YY1 HNF4G NR2F6 MAFK NFYC ZHX2 NR3C1 | PKIG HNF4A TTPAL RPL37AP1 GC20P044473 |
- Transcription factor binding sites by QIAGEN in the HNF4A gene promoter:
Regulatory Element Products
Genomic Location for HNF4A Gene
- Chromosome:
- 20
- Start:
- 44,355,700 bp from pter
- End:
- 44,434,596 bp from pter
- Size:
- 78,897 bases
- Orientation:
- Plus strand
Genomic View for HNF4A Gene
- Cytogenetic band:
-
- 20q13.12 by Ensembl
- 20q13.12 by Entrez Gene
- 20q13.12 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HNF4A Gene
Proteins for HNF4A Gene
-
Protein details for HNF4A Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P41235-HNF4A_HUMAN
- Recommended name:
- Hepatocyte nuclear factor 4-alpha
- Protein Accession:
- P41235
- A5JW41
- B2RPP8
- O00659
- O00723
- Q14540
- Q5QPB8
- Q6B4V5
- Q6B4V6
- Q6B4V7
- Q92653
- Q92654
- Q92655
- Q99864
- Q9NQH0
Protein attributes for HNF4A Gene
- Size:
- 474 amino acids
- Molecular mass:
- 52785 Da
- Quaternary structure:
-
- Homodimerization is required for HNF4-alpha to bind to its recognition site. Interacts with PER2.
- Miscellaneous:
-
- Binds fatty acids.
- SequenceCaution:
-
- Sequence=AAB48082.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAA54248.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAA61133.1; Type=Frameshift; Positions=2, 7; Evidence={ECO:0000305}; Sequence=CAA61134.1; Type=Frameshift; Positions=2, 7; Evidence={ECO:0000305}; Sequence=CAA61135.1; Type=Frameshift; Positions=2, 7; Evidence={ECO:0000305};
Three dimensional structures from OCA and Proteopedia for HNF4A Gene
Protein Expression for HNF4A Gene
Post-translational modifications for HNF4A Gene
- Acetylation at Lys-458 lowers transcriptional activation by about two-fold.
- Phosphorylated on tyrosine residue(s); phosphorylation is important for its DNA-binding activity. Phosphorylation may directly or indirectly play a regulatory role in the subnuclear distribution. Phosphorylation at Ser-313 by AMPK reduces the ability to form homodimers and bind DNA.
- Ubiquitination at posLast=234234 and posLast=307307
- Modification sites at PhosphoSitePlus
Other Protein References for HNF4A Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- EMD Millipore Complete listing of Mono and Polychlonal Antibodies for HNF4A
- R&D Systems Antibodies for HNF4A (HNF-4 alpha/NR2A1)
- Cell Signaling Technology (CST) Antibodies for HNF4A (HNF4 alpha)
-
Custom Antibody ServicesOriGene Antibodies for HNF4A
- Novus Biologicals Antibodies for HNF4A
-
Abcam antibodies for HNF4A
-
Cloud-Clone Corp. Antibodies for HNF4A
- Invitrogen Antibodies for HNF4A
- antibodies-online Antibodies for HNF4A: See all 179
- GeneTex HNF4A antibody for HNF4A
-
Santa Cruz Biotechnology (SCBT) Antibodies for HNF4A
Protein Products
- Search Origene for MassSpec and Protein Over-expression Lysates for HNF4A
- Origene Custom Protein Services for HNF4A
-
Cloud-Clone Corp. Proteins for HNF4A
- antibodies-online Proteins for HNF4A: See all 15
- Search antibodies-online for peptides
- Search GeneTex for Proteins for HNF4A
-
Abcam proteins for HNF4A
No data available for DME Specific Peptides for HNF4A Gene
Domains & Families for HNF4A Gene
Gene Families for HNF4A Gene
- HGNC:
- IUPHAR :
Protein Domains for HNF4A Gene
Suggested Antigen Peptide Sequences for HNF4A Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P41235- Family:
-
- Belongs to the nuclear hormone receptor family. NR2 subfamily.
Function for HNF4A Gene
Molecular function for HNF4A Gene
- GENATLAS Biochemistry:
- transcription factor 4,hepatocyte nuclear factor 4 alpha,steroid/thyroid hormone receptor superfamily,coexpressed with TCF1 and binding TCF1 promoter (see also RGHE),including the alternatively spliced isoforms HNF4A1,HNF4A2,HNF4A4,expressed in pancreatic beta cells,regulating expression of genes required for glucose transport and metabolism,and of sex hormones-binding globulin,interacting with TCF1 for regulation of gene activity and chromatin structure of serpin cluster (PI)
- UniProtKB/Swiss-Prot Function:
- Transcriptionally controlled transcription factor. Binds to DNA sites required for the transcription of alpha 1-antitrypsin, apolipoprotein CIII, transthyretin genes and HNF1-alpha. May be essential for development of the liver, kidney and intestine.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000979 | RNA polymerase II core promoter sequence-specific DNA binding | IEA | -- |
| GO:0001077 | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ISS | -- |
| GO:0001102 | RNA polymerase II activating transcription factor binding | ISS | -- |
| GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | IEA | -- |
| GO:0003677 | DNA binding | IDA,IEA | 7615825 |
Phenotypes for HNF4A Gene
- MGI mutant phenotypes for HNF4A:
- inferred from 10 alleles
- GenomeRNAi human phenotypes for HNF4A:
-
- Increased viability
- Increased vaccinia virus (VACV) infection
- shRNA abundance <= 50%
- Decreased viability in esophageal squamous lineage
- Increased G1 DNA content
- Negative genetic interaction between PTTG1-/- and PTTG1+/+
- Decreased free cholesterol
- Decreased shRNA abundance
- Negative genetic interaction between BLM-/- and BLM+/+
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for HNF4A
-
- Search ViGene Biosciences for HNF4A
CRISPR Products
-
OriGene CRISPR knockouts for HNF4A
-
Santa Cruz Biotechnology (SCBT) CRISPR for HNF4A
- GenScript: Design CRISPR guide RNA sequences for HNF4A
miRNA for HNF4A Gene
- miRTarBase miRNAs that target HNF4A
-
- hsa-mir-24-3p (MIRT003355)
- hsa-mir-34a-5p (MIRT003356)
- hsa-mir-197-3p (MIRT003822)
- hsa-mir-449a (MIRT006262)
- hsa-mir-34c-5p (MIRT006263)
- hsa-mir-766-3p (MIRT006264)
- hsa-mir-34b-5p (MIRT006265)
- hsa-mir-765 (MIRT006266)
- hsa-mir-629-5p (MIRT006542)
- hsa-mir-216a-5p (MIRT438816)
- hsa-mir-143-3p (MIRT438817)
- hsa-mir-4776-3p (MIRT718656)
- hsa-mir-6875-3p (MIRT718657)
- hsa-mir-3180-5p (MIRT718658)
- hsa-mir-4659b-5p (MIRT718659)
- hsa-mir-4659a-5p (MIRT718660)
- hsa-mir-5590-5p (MIRT718661)
- hsa-mir-525-5p (MIRT718662)
- hsa-mir-520a-5p (MIRT718663)
- hsa-mir-488-5p (MIRT718664)
Targeted motifs for HNF4A Gene
- Consensus sequence: CAGAGGNCAAAGTCCA Submotif: DR1 Cell Type: HepG2 GEO ID: GSE25021
miRNA Products
- Search ViGene Biosciences for HNF4A
- SwitchGear HNF4A 3' UTR sequence
- SwitchGear HNF4A 3' UTR sequence
- Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for HNF4A
- Browse OriGene Inhibitory RNA Products For HNF4A
Clone Products
-
OriGene ORF clones in human for HNF4A
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for HNF4A
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for HNF4A
- VectorBuilder custom plasmid, inducible vectors for HNF4A
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HNF4A
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for HNF4A
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) and Transcription Factor Targets for HNF4A Gene
Localization for HNF4A Gene
Subcellular locations from UniProtKB/Swiss-Prot for HNF4A Gene
- Nucleus.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IEA,IDA | 7615825 |
| GO:0005654 | nucleoplasm | TAS,IDA | -- |
| GO:0005737 | cytoplasm | IDA | 14563941 |
Pathways & Interactions for HNF4A Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | AMP-activated Protein Kinase (AMPK) Signaling | ||
| 2 | Regulation of beta-cell development | ||
| 3 | Human Embryonic Stem Cell Pluripotency | ||
| 4 | ERK Signaling |
.58
|
.49
|
| 5 | Gene Expression |
.48
|
|
Pathways by source for HNF4A Gene
2 Sino Biological pathways for HNF4A Gene
1 GeneTex pathway for HNF4A Gene
1 Cell Signaling Technology pathway for HNF4A Gene
6 BioSystems pathways for HNF4A Gene
6 Reactome pathways for HNF4A Gene
1 PharmGKB pathway for HNF4A Gene
2 KEGG pathways for HNF4A Gene
1 GeneGo (Thomson Reuters) pathway for HNF4A Gene
1 R&D Systems pathway for HNF4A Gene
10 Qiagen pathways for HNF4A Gene
Interacting Proteins for HNF4A Gene
SIGNOR curated interactions for HNF4A Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006351 | transcription, DNA-templated | IEA | -- |
| GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
| GO:0006357 | regulation of transcription from RNA polymerase II promoter | IMP | 18163890 |
| GO:0006366 | transcription from RNA polymerase II promoter | IEA | -- |
| GO:0006367 | transcription initiation from RNA polymerase II promoter | TAS | -- |
Drugs & Compounds for HNF4A Gene
(52) Drugs for HNF4A Gene - From: DrugBank, PharmGKB, ClinicalTrials, ApexBio, DGIdb, IUPHAR, and Novoseek
| Name | Status | Disease Links | Group | Role | Mechanism of Action | Clinical Trials |
|---|---|---|---|---|---|---|
| Carbamazepine | Approved, Investigational | Pharma | 132 | |||
| Docetaxel | Approved May 1996, Investigational | Pharma | Microtubulin disassembly inhibitor, Tubulin and VEGF inhibitor, Taxanes, Microtubule stabilizer | 1967 | ||
| Efavirenz | Approved, Investigational | Pharma | Reverse transcriptase inhibitor | 409 | ||
| Lamotrigine | Approved, Investigational | Pharma | 5-HT inhibitor | 185 | ||
| Warfarin | Approved | Pharma | 470 |
| Name | Synonyms | Role | CAS Number | PubChem IDs | PubMed IDs |
|---|
(1) ApexBio Compounds for HNF4A Gene
| Compound | Action | Cas Number |
|---|---|---|
| BI 6015 | HNF4α antagonist | 93987-29-2 |
Drug Products
- ApexBio compounds for HNF4A
Transcripts for HNF4A Gene
mRNA/cDNA for HNF4A Gene
- (11) REFSEQ mRNAs :
- (15) Additional mRNA sequences :
- (33) Selected AceView cDNA sequences:
- (9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for HNF4A Gene
- Hepatocyte nuclear factor 4, alpha:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for HNF4A
-
Santa Cruz Biotechnology (SCBT) CRISPR for HNF4A
- GenScript: Design CRISPR guide RNA sequences for HNF4A
miRNA Products
- Search ViGene Biosciences for HNF4A
- SwitchGear HNF4A 3' UTR sequence
- SwitchGear HNF4A 3' UTR sequence
- Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for HNF4A
- Browse OriGene Inhibitory RNA Products For HNF4A
Clone Products
-
OriGene ORF clones in human for HNF4A
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for HNF4A
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for HNF4A
- VectorBuilder custom plasmid, inducible vectors for HNF4A
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HNF4A
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for HNF4A Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Liver (Hepatobiliary System)
- Fetal Hepatocytes Liver Lobule
- Mature Hepatocytes Liver Lobule
- Periportal Hepatocytes Liver Lobule
- Perivenous Hepatocytes Liver Lobule
- Hepatocytes Liver Lobule
-
Pancreas (Endocrine System)
- Endocrine Progenitor Cells Dorsal Pancreatic Bud
- Beta/Delta Progenitor Cells Dorsal Pancreatic Bud
- Pancreatic Progenitor Cells Ventral Pancreatic Bud
- Endocrine Progenitor Cells Ventral Pancreatic Bud
- Beta/Delta Progenitor Cells Ventral Pancreatic Bud
- NULL (Uncategorized)
-
Epithelial Cells
- Endocrine Progenitor Cells Dorsal Pancreatic Bud
- Pancreatic Progenitor Cells Ventral Pancreatic Bud
- Endocrine Progenitor Cells Ventral Pancreatic Bud
- Loop of Henle Cells Loop of Henle
- Hepatic Diverticulum Cells Hepatic Diverticulum
-
Kidney (Urinary System)
- Loop of Henle Cells Loop of Henle
- Loop of Henle
- Epithelial Tubule
- Metanephros
-
Gut Tube (Gastrointestinal Tract)
- Primitive Gut Endoderm Cells Gut Tube
- Hepatic Endoderm Cells Ventral Foregut Endoderm
- Midgut
- Anterior foregut progenitor cells(Wong AP et. al. 2012)
- Endoderm (Gastrulation Derivatives)
-
Hypoblast (Extraembryonic Tissues)
- Extraembryonic Endoderm Cells Extraembryonic Endoderm
- Hypoblast Cells Hypoblast
-
Yolk Sac (Extraembryonic Tissues)
- Extraembryonic Endoderm Cells Extraembryonic Endoderm
-
Blood (Cardiovascular System)
- Hematopoietic Stem Cells Liver Bud
- Intestine (Gastrointestinal Tract)
- Extraembryonic Tissues (Extraembryonic Tissues)
- Uncategorized
-
Colon (Gastrointestinal Tract)
mRNA differential expression in normal tissues according to GTEx for HNF4A Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for HNF4A Gene
NURSA nuclear receptor signaling pathways regulating expression of HNF4A Gene:
HNF4ASOURCE GeneReport for Unigene cluster for HNF4A Gene:
Hs.116462Evidence on tissue expression from TISSUES for HNF4A Gene
- Liver(4.8)
- Kidney(4.6)
- Intestine(3)
- Pancreas(2.8)
- Stomach(2.2)
- Blood(2)
Phenotype-based relationships between genes and organs from Gene ORGANizer for HNF4A Gene
- ectoderm
- endoderm
- mesoderm
- cardiovascular
- digestive
- endocrine
- immune
- integumentary
- nervous
- reproductive
- skeletal muscle
- skeleton
- urinary
- brain
- ear
- eye
- head
- jaw
- mandible
- maxilla
- mouth
- neck
- skull
- tooth
- chest wall
- clavicle
- heart
- rib
- rib cage
- scapula
- sternum
- adrenal gland
- kidney
- liver
- pancreas
- ovary
- pelvis
- penis
- placenta
- testicle
- ureter
- urethra
- urinary bladder
- uterus
- ankle
- arm
- digit
- elbow
- femur
- fibula
- finger
- foot
- forearm
- hand
- hip
- humerus
- knee
- lower limb
- radius
- shin
- shoulder
- thigh
- tibia
- toe
- ulna
- upper limb
- wrist
- blood
- blood vessel
- peripheral nerve
- peripheral nervous system
- skin
- spinal column
- sweat gland
- vertebrae
- white blood cell
Primer Products
-
OriGene qPCR primer pairs for HNF4A
No data available for mRNA Expression by UniProt/SwissProt for HNF4A Gene
Orthologs for HNF4A Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | HNF4A 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | HNF4A 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | HNF4A 34 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | HNF4A 35 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Hnf4a 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Hnf4a 34 16 35 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | HNF4A 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | HNF4ALPHA 35 |
|
OneToOne | |
| HNF4A 34 |
|
||||
| lizard (Anolis carolinensis) |
Reptilia | HNF4A 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | hnf4a 34 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | hnf4-prov 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | hnf4a 34 35 |
|
||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP002155 34 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | Hnf4 35 |
|
OneToMany | |
| worm (Caenorhabditis elegans) |
Secernentea | nhr-64 35 |
|
ManyToMany | |
| nhr-69 35 |
|
ManyToMany | |||
| nhr-35 35 |
|
ManyToMany | |||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 35 |
|
OneToMany |
- Species where no ortholog for HNF4A was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
Paralogs for HNF4A Gene
Paralogs for HNF4A Gene
(19) SIMAP similar genes for HNF4A Gene using alignment to 3 proteins:
Variants for HNF4A Gene
| SNP ID | Clin | Chr 20 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs137853336 | Pathogenic, Maturity-onset diabetes of the young 1 (MODY1) [MIM:125850] | 44,413,714(+) | GGGAC(C/G/T)GGATC | reference, missense | |
| rs137853337 | Pathogenic, Diabetes mellitus, non-insulin-dependent (NIDDM) [MIM:125853] | 44,428,409(+) | CCAAC(A/G)TCATC | reference, missense | |
| rs137853338 | Pathogenic, Maturity-onset diabetes of the young 1 (MODY1) [MIM:125850] | 44,424,243(+) | GGAGA(G/T)GCTGC | reference, missense | |
| rs587777732 | Pathogenic, Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young (FRTS4) [MIM:616026] | 44,406,195(+) | TCTTC(C/T)GGAGG | upstream-variant-2KB, reference, missense | |
| VAR_010601 | Maturity-onset diabetes of the young 1 (MODY1) [MIM:125850] |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2504273 | CNV | insertion | 19546169 |
| esv2663976 | CNV | deletion | 23128226 |
| esv3557112 | CNV | deletion | 23714750 |
| nsv1057847 | CNV | loss | 25217958 |
| nsv1061719 | CNV | gain | 25217958 |
| nsv586065 | CNV | gain | 21841781 |
| nsv819556 | CNV | insertion | 19587683 |
Relevant External Links for HNF4A Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HNF4A Gene
Disorders for HNF4A Gene
(23) MalaCards diseases for HNF4A Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| mody, type i |
|
|
| fanconi renotubular syndrome 4, with maturity-onset diabetes of the young |
|
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| hyperinsulinism due to hnf4a deficiency |
|
|
| diabetes mellitus, noninsulin-dependent |
|
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| renal cysts and diabetes syndrome |
|
|
UniProtKB/Swiss-Prot
HNF4A_HUMAN- Diabetes mellitus, non-insulin-dependent (NIDDM) [MIM:125853]: A multifactorial disorder of glucose homeostasis caused by a lack of sensitivity to the bodys own insulin. Affected individuals usually have an obese body habitus and manifestations of a metabolic syndrome characterized by diabetes, insulin resistance, hypertension and hypertriglyceridemia. The disease results in long-term complications that affect the eyes, kidneys, nerves, and blood vessels. {ECO:0000269 PubMed:9449683}. Note=Disease susceptibility may be associated with variations affecting the gene represented in this entry.
- Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young (FRTS4) [MIM:616026]: A disease characterized by Fanconi syndrome associated with a beta cell phenotype of neonatal hyperinsulinism with macrosomia and young onset diabetes. Fanconi syndrome is a proximal tubulopathy resulting in generalised aminoaciduria, low molecular weight proteinuria, glycosuria, hyperphosphaturia and hypouricemia. Some FRTS4 patients have nephrocalcinosis, renal impairment, hypercalciuria with relative hypocalcemia, and hypermagnesemia. {ECO:0000269 PubMed:22802087, ECO:0000269 PubMed:24285859}. Note=The disease is caused by mutations affecting the gene represented in this entry.
- Maturity-onset diabetes of the young 1 (MODY1) [MIM:125850]: A form of diabetes that is characterized by an autosomal dominant mode of inheritance, onset in childhood or early adulthood (usually before 25 years of age), a primary defect in insulin secretion and frequent insulin-independence at the beginning of the disease. {ECO:0000269 PubMed:10389854, ECO:0000269 PubMed:17407387, ECO:0000269 PubMed:9243109, ECO:0000269 PubMed:9313765}. Note=The disease is caused by mutations affecting the gene represented in this entry.
Relevant External Links for HNF4A
No data available for Genatlas for HNF4A Gene
Publications for HNF4A Gene
- Mutations in the hepatocyte nuclear factor-4alpha gene in maturity- onset diabetes of the young (MODY1). (PMID: 8945471) Yamagata K. … Bell G.I. (Nature 1996) 3 4 22 46 64
- Diazoxide-responsive hyperinsulinemic hypoglycemia caused by HNF4A gene mutations. (PMID: 20164212) Flanagan S.E. … Ellard S. (Eur. J. Endocrinol. 2010) 3 22 46 64
- Mutations of maturity-onset diabetes of the young (MODY) genes in Thais with early-onset type 2 diabetes mellitus. (PMID: 18811724) Plengvidhya N. … Yenchitsomanus P.T. (Clin. Endocrinol. (Oxf) 2009) 3 22 46 64
- Mutations in the coding regions of the hepatocyte nuclear factor 4 alpha in Iranian families with maturity onset diabetes of the young. (PMID: 20003313) Taghavi S.M. … Valizadeh N. (Cardiovasc Diabetol 2009) 3 22 46 64
- PXR, CAR and HNF4alpha genotypes and their association with pharmacokinetics and pharmacodynamics of docetaxel and doxorubicin in Asian patients. (PMID: 17876342) Hor S.Y. … Tan T. (Pharmacogenomics J. 2008) 3 22 46 64
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