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Aliases for HNF1A-AS1 Gene

Subcategory (RNA class) for HNF1A-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HNF1A-AS1 Gene

  • HNF1A Antisense RNA 1 2 3
  • HNF1A Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 12 Open Reading Frame 27 2
  • Non-Protein Coding RNA 262 2
  • NCRNA00262 3
  • C12orf27 3

External Ids for HNF1A-AS1 Gene

Previous Symbols for HNF1A-AS1 Gene

  • C12orf27
  • NCRNA00262

Summaries for HNF1A-AS1 Gene

GeneCards Summary for HNF1A-AS1 Gene

HNF1A-AS1 (HNF1A Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF1A-AS1 Gene

Genomics for HNF1A-AS1 Gene

Genomic Location for HNF1A-AS1 Gene

Start:
120,941,728 bp from pter
End:
120,980,965 bp from pter
Size:
39,238 bases
Orientation:
Minus strand

Genomic View for HNF1A-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HNF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNF1A-AS1 Gene

No data available for Regulatory Elements for HNF1A-AS1 Gene

Proteins for HNF1A-AS1 Gene

Post-translational modifications for HNF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNF1A-AS1 Gene

Domains for HNF1A-AS1 Gene

Gene Families for HNF1A-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with HNF1A-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for HNF1A-AS1 Gene

Function for HNF1A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HNF1A-AS1 Gene

Localization for HNF1A-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for HNF1A-AS1 Gene

Pathways for HNF1A-AS1 Gene

SuperPathways for HNF1A-AS1 Gene

No Data Available

Interacting Proteins for HNF1A-AS1 Gene

Gene Ontology (GO) - Biological Process for HNF1A-AS1 Gene

None

No data available for Pathways by source for HNF1A-AS1 Gene

Transcripts for HNF1A-AS1 Gene

mRNA/cDNA for HNF1A-AS1 Gene

(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HNF1A-AS1 Gene

HNF1A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HNF1A-AS1 Gene

No ASD Table

Relevant External Links for HNF1A-AS1 Gene

GeneLoc Exon Structure for
HNF1A-AS1
ECgene alternative splicing isoforms for
HNF1A-AS1

Expression for HNF1A-AS1 Gene

mRNA expression in normal human tissues for HNF1A-AS1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HNF1A-AS1 Gene

This gene is overexpressed in Stomach (10.7), Liver (10.4), Colon - Transverse (10.0), Kidney - Cortex (9.8), and Pancreas (7.6).

SOURCE GeneReport for Unigene cluster for HNF1A-AS1 Gene Hs.612351

genes like me logo Genes that share expressions with HNF1A-AS1: view

Orthologs for HNF1A-AS1 Gene

Evolution for HNF1A-AS1 Gene

ENSEMBL:
Gene Tree for HNF1A-AS1 (if available)
TreeFam:
Gene Tree for HNF1A-AS1 (if available)

No data available for Orthologs for HNF1A-AS1 Gene

Paralogs for HNF1A-AS1 Gene

No data available for Paralogs for HNF1A-AS1 Gene

Variants for HNF1A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HNF1A-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs1138187 -- 120,972,519(-) CCAAC(A/G)TGGTA upstream-variant-2KB
rs1138189 -- 120,972,511(-) GTAAA(A/G)CCCCA upstream-variant-2KB
rs1138191 -- 120,972,506(-) ACCCC(A/G)TCTCT upstream-variant-2KB
rs1138192 -- 120,972,487(-) tacaa(A/G)aatta upstream-variant-2KB
rs1138194 -- 120,972,485(-) caaaa(A/G)ttagc upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HNF1A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv521928 CNV Gain 19592680
nsv899559 CNV Gain 21882294
dgv1496n71 CNV Gain 21882294

Relevant External Links for HNF1A-AS1 Gene

HapMap Linkage Disequilibrium report
HNF1A-AS1

Disorders for HNF1A-AS1 Gene

No disorders were found for HNF1A-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for HNF1A-AS1 Gene

Publications for HNF1A-AS1 Gene

  1. Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells. (PMID: 24000294) Yang X. … Mori Y. (Gut 2013) 2 3
  2. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes. (PMID: 18940312) Yuan X. … Mooser V. (Am. J. Hum. Genet. 2008) 3
  5. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers J.C. … Kooner J.S. (Nat. Genet. 2011) 3

Products for HNF1A-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HNF1A-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HNF1A-AS1
    • Block miRNA regulation of HNF1A-AS1 using miScript Target Protectors

    Sources for HNF1A-AS1 Gene

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