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Aliases for HNF1A-AS1 Gene

Subcategory (RNA class) for HNF1A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HNF1A-AS1 Gene

  • HNF1A Antisense RNA 1 2 3 5
  • HNF1A Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 12 Open Reading Frame 27 2
  • Non-Protein Coding RNA 262 2
  • NCRNA00262 3
  • C12orf27 3

External Ids for HNF1A-AS1 Gene

Previous HGNC Symbols for HNF1A-AS1 Gene

  • C12orf27
  • NCRNA00262

Previous GeneCards Identifiers for HNF1A-AS1 Gene

  • GC12M121406

Summaries for HNF1A-AS1 Gene

GeneCards Summary for HNF1A-AS1 Gene

HNF1A-AS1 (HNF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF1A-AS1 Gene

Genomics for HNF1A-AS1 Gene

Regulatory Elements for HNF1A-AS1 Gene

Enhancers for HNF1A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G121143 2 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -163.6 -163588 3.0 PKNOX1 CREB3L1 ARNT ARID4B SIN3A ZNF766 FOS ZNF263 SP3 JUNB P2RX4 SETD1B P2RX7 HNF1A-AS1 CAMKK2 OASL ENSG00000257053
GH12G120583 1.2 Ensembl ENCODE 11.6 +396.8 396762 2.0 ARID4B GLIS2 ZNF143 ZNF263 REST ZNF579 GLIS1 MXD3 KDM1A HNF4A COQ5 GATC HNF1A-AS1 MLEC UNC119B C12orf43 ENSG00000256569 ACADS OASL DYNLL1
GH12G120905 1.2 Ensembl ENCODE dbSUPER 10.7 +74.1 74103 2.3 GATAD2A SAP130 TEAD1 NFIA HLF CEBPB HMG20A ZNF644 RARA TEAD3 ACADS ENSG00000256569 HNF1A-AS1 C12orf43 SPPL3 ENSG00000272849 CLIC1P1
GH12G120580 1.1 ENCODE 11.6 +399.6 399572 1.9 HDGF PKNOX1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 COQ5 GATC HNF1A-AS1 MLEC UNC119B C12orf43 ENSG00000256569 ACADS OASL SRSF9
GH12G120956 0.8 ENCODE dbSUPER 12.1 +23.8 23844 1.5 GATA3 HINFP POLR2A IKZF1 HMBOX1 ACADS C12orf43 HNF1A-AS1 SPPL3 ENSG00000255946 ENSG00000256569 UNC119B MLEC HNF1A RPL12P33
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HNF1A-AS1 Gene

Chromosome:
12
Start:
120,941,728 bp from pter
End:
120,980,965 bp from pter
Size:
39,238 bases
Orientation:
Minus strand

Genomic View for HNF1A-AS1 Gene

Genes around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNF1A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNF1A-AS1 Gene

Proteins for HNF1A-AS1 Gene

Post-translational modifications for HNF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNF1A-AS1 Gene

Domains & Families for HNF1A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNF1A-AS1 Gene

Function for HNF1A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF1A-AS1 Gene

Localization for HNF1A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HNF1A-AS1 Gene

Pathways & Interactions for HNF1A-AS1 Gene

SuperPathways for HNF1A-AS1 Gene

No Data Available

Interacting Proteins for HNF1A-AS1 Gene

Gene Ontology (GO) - Biological Process for HNF1A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HNF1A-AS1 Gene

Drugs & Compounds for HNF1A-AS1 Gene

No Compound Related Data Available

Transcripts for HNF1A-AS1 Gene

mRNA/cDNA for HNF1A-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HNF1A-AS1 Gene

HNF1A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HNF1A-AS1 Gene

No ASD Table

Relevant External Links for HNF1A-AS1 Gene

GeneLoc Exon Structure for
HNF1A-AS1
ECgene alternative splicing isoforms for
HNF1A-AS1

Expression for HNF1A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HNF1A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HNF1A-AS1 Gene

This gene is overexpressed in Stomach (x10.7), Liver (x10.4), Colon - Transverse (x10.0), Kidney - Cortex (x9.8), and Pancreas (x7.6).

SOURCE GeneReport for Unigene cluster for HNF1A-AS1 Gene:

Hs.612351
genes like me logo Genes that share expression patterns with HNF1A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HNF1A-AS1 Gene

Orthologs for HNF1A-AS1 Gene

Evolution for HNF1A-AS1 Gene

ENSEMBL:
Gene Tree for HNF1A-AS1 (if available)
TreeFam:
Gene Tree for HNF1A-AS1 (if available)

No data available for Orthologs for HNF1A-AS1 Gene

Paralogs for HNF1A-AS1 Gene

No data available for Paralogs for HNF1A-AS1 Gene

Variants for HNF1A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HNF1A-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1001507405 -- 120,971,096(+) GTGAT(C/T)CACCA nc-transcript-variant
rs1002164154 -- 120,972,021(+) CTGAG(C/T)GTATG nc-transcript-variant
rs1002261600 -- 120,971,772(+) CTGTG(C/G)CTCGC nc-transcript-variant
rs1003692606 -- 120,969,476(+) TTTTT(C/T)TGAGA downstream-variant-500B
rs1004204738 -- 120,974,094(+) CGAGA(A/C)CAGCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HNF1A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv521928 CNV gain 19592680

Relevant External Links for HNF1A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HNF1A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNF1A-AS1 Gene

Disorders for HNF1A-AS1 Gene

Relevant External Links for HNF1A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HNF1A-AS1

No disorders were found for HNF1A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNF1A-AS1 Gene

Publications for HNF1A-AS1 Gene

  1. The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma. (PMID: 25863539) Wu Y. … Song Y. (Oncotarget 2015) 2 3 64
  2. Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells. (PMID: 24000294) Yang X. … Mori Y. (Gut 2013) 2 3 64
  3. Long non-coding RNA HNF1A-AS1 functioned as an oncogene and autophagy promoter in hepatocellular carcinoma through sponging hsa-miR-30b-5p. (PMID: 27084450) Liu Z. … Dong J. (Biochem. Biophys. Res. Commun. 2016) 3 64
  4. Genetic loci associated with circulating levels of very long-chain saturated fatty acids. (PMID: 25378659) Lemaitre R.N. … Friedlander Y. (J. Lipid Res. 2015) 3 64
  5. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3 64

Products for HNF1A-AS1 Gene

Sources for HNF1A-AS1 Gene

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