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Aliases for HNF1A-AS1 Gene

Subcategory (RNA class) for HNF1A-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HNF1A-AS1 Gene

  • HNF1A Antisense RNA 1 2 3
  • HNF1A Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 12 Open Reading Frame 27 2
  • Non-Protein Coding RNA 262 2
  • NCRNA00262 3
  • C12orf27 3

External Ids for HNF1A-AS1 Gene

Previous HGNC Symbols for HNF1A-AS1 Gene

  • C12orf27
  • NCRNA00262

Previous GeneCards Identifiers for HNF1A-AS1 Gene

  • GC12M121406

Summaries for HNF1A-AS1 Gene

GeneCards Summary for HNF1A-AS1 Gene

HNF1A-AS1 (HNF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF1A-AS1 Gene

Genomics for HNF1A-AS1 Gene

Genomic Location for HNF1A-AS1 Gene

Start:
120,941,728 bp from pter
End:
120,980,965 bp from pter
Size:
39,238 bases
Orientation:
Minus strand

Genomic View for HNF1A-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HNF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNF1A-AS1 Gene

No data available for Regulatory Elements for HNF1A-AS1 Gene

Proteins for HNF1A-AS1 Gene

Post-translational modifications for HNF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNF1A-AS1 Gene

Domains for HNF1A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNF1A-AS1 Gene

Function for HNF1A-AS1 Gene

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HNF1A-AS1
    • Block miRNA regulation of HNF1A-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for HNF1A-AS1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF1A-AS1 Gene

    Localization for HNF1A-AS1 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HNF1A-AS1 Gene

    Pathways for HNF1A-AS1 Gene

    SuperPathways for HNF1A-AS1 Gene

    No Data Available

    Interacting Proteins for HNF1A-AS1 Gene

    Gene Ontology (GO) - Biological Process for HNF1A-AS1 Gene

    None

    No data available for Pathways by source for HNF1A-AS1 Gene

    Transcripts for HNF1A-AS1 Gene

    mRNA/cDNA for HNF1A-AS1 Gene

    (2) Additional mRNA sequences :
    (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for HNF1A-AS1 Gene

    HNF1A antisense RNA 1:
    Representative Sequences:

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate HNF1A-AS1
      • Block miRNA regulation of HNF1A-AS1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for HNF1A-AS1

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for HNF1A-AS1 Gene

      No ASD Table

      Relevant External Links for HNF1A-AS1 Gene

      GeneLoc Exon Structure for
      HNF1A-AS1
      ECgene alternative splicing isoforms for
      HNF1A-AS1

      Expression for HNF1A-AS1 Gene

      mRNA expression in normal human tissues for HNF1A-AS1 Gene

      mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

      mRNA differential expression in normal tissues according to GTEx for HNF1A-AS1 Gene

      This gene is overexpressed in Stomach (10.7), Liver (10.4), Colon - Transverse (10.0), Kidney - Cortex (9.8), and Pancreas (7.6).

      SOURCE GeneReport for Unigene cluster for HNF1A-AS1 Gene Hs.612351

      genes like me logo Genes that share expressions with HNF1A-AS1: view

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      In Situ Assay Products

      No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HNF1A-AS1 Gene

      Orthologs for HNF1A-AS1 Gene

      Evolution for HNF1A-AS1 Gene

      ENSEMBL:
      Gene Tree for HNF1A-AS1 (if available)
      TreeFam:
      Gene Tree for HNF1A-AS1 (if available)

      No data available for Orthologs for HNF1A-AS1 Gene

      Paralogs for HNF1A-AS1 Gene

      No data available for Paralogs for HNF1A-AS1 Gene

      Variants for HNF1A-AS1 Gene

      Sequence variations from dbSNP and Humsavar for HNF1A-AS1 Gene

      SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
      rs578020703 -- 120,969,724(+) GCCTC(C/T)CAAAT downstream-variant-500B
      rs577344871 -- 120,971,363(+) GCAGA(G/T)GGTTG nc-transcript-variant
      rs576324731 -- 120,970,969(+) CCACG(C/T)CCGGC nc-transcript-variant
      rs575796072 -- 120,969,550(+) CGCCT(C/T)CTGGA downstream-variant-500B
      rs575368494 -- 120,972,862(+) ACTCC(A/T)GACCT upstream-variant-2KB

      Structural Variations from Database of Genomic Variants (DGV) for HNF1A-AS1 Gene

      Variant ID Type Subtype PubMed ID
      nsv521928 CNV Gain 19592680
      nsv899559 CNV Gain 21882294
      dgv1496n71 CNV Gain 21882294

      Relevant External Links for HNF1A-AS1 Gene

      HapMap Linkage Disequilibrium report
      HNF1A-AS1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HNF1A-AS1 Gene

      Disorders for HNF1A-AS1 Gene

      No disorders were found for HNF1A-AS1 Gene.

      No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HNF1A-AS1 Gene

      Publications for HNF1A-AS1 Gene

      1. Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells. (PMID: 24000294) Yang X. … Mori Y. (Gut 2013) 2 3
      2. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3
      3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
      4. Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes. (PMID: 18940312) Yuan X. … Mooser V. (Am. J. Hum. Genet. 2008) 3
      5. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers J.C. … Kooner J.S. (Nat. Genet. 2011) 3

      Products for HNF1A-AS1 Gene

      Sources for HNF1A-AS1 Gene

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