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Aliases for HNF1A-AS1 Gene

Subcategory (RNA class) for HNF1A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HNF1A-AS1 Gene

  • HNF1A Antisense RNA 1 2 3 5
  • HNF1A Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 12 Open Reading Frame 27 2
  • Non-Protein Coding RNA 262 2
  • NCRNA00262 3
  • C12orf27 3

External Ids for HNF1A-AS1 Gene

Previous HGNC Symbols for HNF1A-AS1 Gene

  • C12orf27
  • NCRNA00262

Previous GeneCards Identifiers for HNF1A-AS1 Gene

  • GC12M121406

Summaries for HNF1A-AS1 Gene

GeneCards Summary for HNF1A-AS1 Gene

HNF1A-AS1 (HNF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF1A-AS1 Gene

Genomics for HNF1A-AS1 Gene

Regulatory Elements for HNF1A-AS1 Gene

Promoters for HNF1A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HNF1A-AS1 Gene

Chromosome:
12
Start:
120,941,728 bp from pter
End:
120,980,965 bp from pter
Size:
39,238 bases
Orientation:
Minus strand

Genomic View for HNF1A-AS1 Gene

Genes around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNF1A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNF1A-AS1 Gene

Proteins for HNF1A-AS1 Gene

Post-translational modifications for HNF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNF1A-AS1 Gene

Domains & Families for HNF1A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNF1A-AS1 Gene

Function for HNF1A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF1A-AS1 Gene

Localization for HNF1A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HNF1A-AS1 Gene

Pathways & Interactions for HNF1A-AS1 Gene

SuperPathways for HNF1A-AS1 Gene

No Data Available

Interacting Proteins for HNF1A-AS1 Gene

Gene Ontology (GO) - Biological Process for HNF1A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HNF1A-AS1 Gene

Drugs & Compounds for HNF1A-AS1 Gene

No Compound Related Data Available

Transcripts for HNF1A-AS1 Gene

mRNA/cDNA for HNF1A-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HNF1A-AS1 Gene

HNF1A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HNF1A-AS1 Gene

No ASD Table

Relevant External Links for HNF1A-AS1 Gene

GeneLoc Exon Structure for
HNF1A-AS1
ECgene alternative splicing isoforms for
HNF1A-AS1

Expression for HNF1A-AS1 Gene

mRNA expression in normal human tissues for HNF1A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HNF1A-AS1 Gene

This gene is overexpressed in Stomach (x10.7), Liver (x10.4), Colon - Transverse (x10.0), Kidney - Cortex (x9.8), and Pancreas (x7.6).

SOURCE GeneReport for Unigene cluster for HNF1A-AS1 Gene Hs.612351

genes like me logo Genes that share expression patterns with HNF1A-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HNF1A-AS1 Gene

Orthologs for HNF1A-AS1 Gene

Evolution for HNF1A-AS1 Gene

ENSEMBL:
Gene Tree for HNF1A-AS1 (if available)
TreeFam:
Gene Tree for HNF1A-AS1 (if available)

No data available for Orthologs for HNF1A-AS1 Gene

Paralogs for HNF1A-AS1 Gene

No data available for Paralogs for HNF1A-AS1 Gene

Variants for HNF1A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HNF1A-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1138187 -- 120,972,519(-) CCAAC(A/G)TGGTA upstream-variant-2KB
rs1138189 -- 120,972,511(-) GTAAA(A/G)CCCCA upstream-variant-2KB
rs1138191 -- 120,972,506(-) ACCCC(A/G)TCTCT upstream-variant-2KB
rs1138192 -- 120,972,487(-) tacaa(A/G)aatta upstream-variant-2KB
rs1138194 -- 120,972,485(-) caaaa(A/G)ttagc upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HNF1A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv521928 CNV Gain 19592680
nsv899559 CNV Gain 21882294
dgv1496n71 CNV Gain 21882294

Relevant External Links for HNF1A-AS1 Gene

HapMap Linkage Disequilibrium report
HNF1A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNF1A-AS1 Gene

Disorders for HNF1A-AS1 Gene

Relevant External Links for HNF1A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HNF1A-AS1

No disorders were found for HNF1A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNF1A-AS1 Gene

Publications for HNF1A-AS1 Gene

  1. The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma. (PMID: 25863539) Wu Y. … Song Y. (Oncotarget 2015) 2 3 67
  2. Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells. (PMID: 24000294) Yang X. … Mori Y. (Gut 2013) 2 3
  3. Genetic loci associated with circulating levels of very long-chain saturated fatty acids. (PMID: 25378659) Lemaitre R.N. … Friedlander Y. (J. Lipid Res. 2015) 3
  4. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3
  5. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers J.C. … Kooner J.S. (Nat. Genet. 2011) 3

Products for HNF1A-AS1 Gene

Sources for HNF1A-AS1 Gene

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