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Aliases for HNF1A-AS1 Gene

Subcategory (RNA class) for HNF1A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HNF1A-AS1 Gene

  • HNF1A Antisense RNA 1 2 3 5
  • HNF1A Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 12 Open Reading Frame 27 2
  • Non-Protein Coding RNA 262 2
  • NCRNA00262 3
  • C12orf27 3

External Ids for HNF1A-AS1 Gene

Previous HGNC Symbols for HNF1A-AS1 Gene

  • C12orf27
  • NCRNA00262

Previous GeneCards Identifiers for HNF1A-AS1 Gene

  • GC12M121406

Summaries for HNF1A-AS1 Gene

GeneCards Summary for HNF1A-AS1 Gene

HNF1A-AS1 (HNF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HNF1A-AS1 Gene

Genomics for HNF1A-AS1 Gene

Regulatory Elements for HNF1A-AS1 Gene

Enhancers for HNF1A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F120955 0.2 ENCODE 12 +25.6 25603 0.1 SMARCA5 PKNOX1 CBX3 ZNF280D ZMYM3 HNF1A-AS1 SPPL3 C12orf43 ACADS ENSG00000255946 ENSG00000256569 MIR4700 UNC119B MLEC HNF1A
GH12F120956 0.2 ENCODE 12 +23.8 23844 1.5 GATA3 HINFP POLR2A IKZF1 HMBOX1 ACADS C12orf43 HNF1A-AS1 SPPL3 ENSG00000256569 ENSG00000255946 MIR4700 UNC119B MLEC HNF1A
GH12F120583 1.4 Ensembl ENCODE 11.6 +396.8 396762 2.0 CBX3 KLF17 ARID4B RAD21 GLIS2 ZNF143 CREM EGR2 ZNF263 SMARCA5 COQ5 GATC HNF1A-AS1 MLEC MIR4700 UNC119B C12orf43 ENSG00000256569 ACADS OASL
GH12F120580 0.2 ENCODE 11.6 +399.6 399572 1.9 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 FOS KLF13 COQ5 GATC HNF1A-AS1 MLEC MIR4700 UNC119B C12orf43 ACADS ENSG00000256569 OASL
GH12F120782 1 Ensembl ENCODE 11.1 +197.5 197501 1.2 JUND JUN HLF ETV6 ACADS SPPL3 ENSG00000255946 ENSG00000256569 HNF1A-AS1 P2RX4 PIR38395
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HNF1A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000438239 1265 2601 MLX ARID4B SIN3A DMAP1 ZNF48 YY1 SLC30A9 ZNF121 PAF1 SP5

Genomic Location for HNF1A-AS1 Gene

Chromosome:
12
Start:
120,941,728 bp from pter
End:
120,980,965 bp from pter
Size:
39,238 bases
Orientation:
Minus strand

Genomic View for HNF1A-AS1 Gene

Genes around HNF1A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HNF1A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HNF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HNF1A-AS1 Gene

Proteins for HNF1A-AS1 Gene

Post-translational modifications for HNF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HNF1A-AS1 Gene

Domains & Families for HNF1A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HNF1A-AS1 Gene

Function for HNF1A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HNF1A-AS1 Gene

Localization for HNF1A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HNF1A-AS1 Gene

Pathways & Interactions for HNF1A-AS1 Gene

SuperPathways for HNF1A-AS1 Gene

No Data Available

Interacting Proteins for HNF1A-AS1 Gene

Gene Ontology (GO) - Biological Process for HNF1A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HNF1A-AS1 Gene

Transcripts for HNF1A-AS1 Gene

mRNA/cDNA for HNF1A-AS1 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HNF1A-AS1 Gene

HNF1A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HNF1A-AS1 Gene

No ASD Table

Relevant External Links for HNF1A-AS1 Gene

GeneLoc Exon Structure for
HNF1A-AS1
ECgene alternative splicing isoforms for
HNF1A-AS1

Expression for HNF1A-AS1 Gene

mRNA expression in normal human tissues for HNF1A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HNF1A-AS1 Gene

This gene is overexpressed in Stomach (x10.7), Liver (x10.4), Colon - Transverse (x10.0), Kidney - Cortex (x9.8), and Pancreas (x7.6).

SOURCE GeneReport for Unigene cluster for HNF1A-AS1 Gene:

Hs.612351
genes like me logo Genes that share expression patterns with HNF1A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HNF1A-AS1 Gene

Orthologs for HNF1A-AS1 Gene

Evolution for HNF1A-AS1 Gene

ENSEMBL:
Gene Tree for HNF1A-AS1 (if available)
TreeFam:
Gene Tree for HNF1A-AS1 (if available)

No data available for Orthologs for HNF1A-AS1 Gene

Paralogs for HNF1A-AS1 Gene

No data available for Paralogs for HNF1A-AS1 Gene

Variants for HNF1A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HNF1A-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs111389084 -- 120,969,936(+) CTGCC(A/T)CAGCC nc-transcript-variant
rs111398228 -- 120,973,619(+) AATAC(A/C)AAAAT upstream-variant-2KB
rs111775768 -- 120,972,583(+) AAAGC(A/G)CTGGG upstream-variant-2KB
rs113430888 -- 120,970,945(+) AGCTC(A/G)GATTA nc-transcript-variant
rs1138187 -- 120,972,519(-) CCAAC(A/G)TGGTA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HNF1A-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv521928 CNV gain 19592680

Relevant External Links for HNF1A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HNF1A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HNF1A-AS1 Gene

Disorders for HNF1A-AS1 Gene

Relevant External Links for HNF1A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HNF1A-AS1

No disorders were found for HNF1A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HNF1A-AS1 Gene

Publications for HNF1A-AS1 Gene

  1. The long non-coding RNA HNF1A-AS1 regulates proliferation and metastasis in lung adenocarcinoma. (PMID: 25863539) Wu Y. … Song Y. (Oncotarget 2015) 2 3 64
  2. Long non-coding RNA HNF1A-AS1 regulates proliferation and migration in oesophageal adenocarcinoma cells. (PMID: 24000294) Yang X. … Mori Y. (Gut 2013) 2 3 64
  3. Genetic loci associated with circulating levels of very long-chain saturated fatty acids. (PMID: 25378659) Lemaitre R.N. … Friedlander Y. (J. Lipid Res. 2015) 3 64
  4. Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma. (PMID: 25608466) Tong Y.S. … Cao X.F. (Mol. Cancer 2015) 3 64
  5. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers J.C. … Kooner J.S. (Nat. Genet. 2011) 3 64

Products for HNF1A-AS1 Gene

Sources for HNF1A-AS1 Gene

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