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Aliases & Descriptions for HMOX1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 1.14.99.3 3 | | HO 3 | | HO-1 1, 2, 3 | | HO1 3 | | HSP32 2 | | OTTHUMP00000028925 2 | | bK286B10 1, 2 |
| | | Descriptions |
|---|
| heme oxygenase (decycling) 1 2 | | heme oxygenase (decyclizing) 1 2 |
|
| | Search outside databases for aliases for HMOX1 genePrevious GC identifer: GC22P032473 |
Summaries for HMOX1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HMOX1: Heme oxygenase, an essential enzyme in heme catabolism, cleaves heme to form biliverdin, which is subsequently converted to bilirubin by biliverdin reductase, and carbon monoxide, a putative neurotransmitter. Heme oxygenase activity is induced by its substrate heme and by various nonheme substances. Heme oxygenase occurs as 2 isozymes, an inducible heme oxygenase-1 and a constitutive heme oxygenase-2. HMOX1 and HMOX2 belong to the heme oxygenase family. [provided by RefSeq] UniProtKB/Swiss-Prot: HMOX1_HUMAN, P09601Function: Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. Under physiological conditions, the activity of heme oxygenase is highest in the spleen, where senescent erythrocytes are sequestrated and destroyedGene Wiki entry for HMOX1 |
Genomic Location for HMOX1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HMOX1 gene 
Entrez Gene cytogenetic band: 22q12|22q13.1 Ensembl cytogenetic band: 22q12.3 HGNC cytogenetic band: 22q12HMOX1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 22 GeneLoc Exon Structure GeneLoc location for GC22P034101:
(about GC identifiers)
Start:
|
34,107,087 bp from pter |
End:
|
34,120,194 bp from pter |
Size:
|
13,108 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000022.9 NT_011520.11
| Proteins for HMOX1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: HMOX1_HUMAN, P09601 (See
protein sequence)Recommended Name: Heme oxygenase 1 Size: 288 amino acids; 32819 Da
Subcellular location: Microsome. Endoplasmic reticulum
PDB structures from and Proteopedia :1N3U (3D)
 1N45 (3D)
 1NI6 (3D)
 1OYK (3D)
 1OYL (3D)
 1OZE (3D)
 1OZL (3D)
 1OZR (3D)
 1OZW (3D)
 1S13 (3D)
 1S8C (3D)
 1T5P (3D)
 1TWN (3D)
 1TWR (3D)
 1XJZ (3D)
 1XK0 (3D)
 1XK1 (3D)
 1XK2 (3D)
 1XK3 (3D)
 3CZY (3D)
 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002124.1
ENSEMBL proteins: ENSP00000216117
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/7 Gene Ontology (GO) cellular component terms (links to tree view) (see all 7
): About this table
Antibodies for HMOX1: Assays for HMOX1: | Protein
Domains/ Families for HMOX1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P09601
ProtoNet protein and cluster: P09601 1 Blocks protein family: IPB002051 Heme oxygenase
UniProtKB/Swiss-Prot: HMOX1_HUMAN, P09601Similarity: Belongs to the heme oxygenase family | Gene Function for HMOX1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002133
Applied Biosystems Silencer® siRNAs for HMOX1
Sigma-Aldrich siRNA and siRNA Panels for HMOX1  Sigma-Aldrich shRNA Panels and shRNA for HMOX1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002133                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002133                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002133 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002133
UniProtKB/Swiss-Prot: HMOX1_HUMAN, P09601Function: Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. Under physiological conditions, the activity of heme oxygenase is highest in the spleen, where senescent erythrocytes are sequestrated and destroyedCatalytic activity: Heme + 3 AH(2) + 3 O(2) = biliverdin + Fe(2+) + CO + 3 A + 3 H(2)OInduction: Heme oxygenase 1 activity is highly inducible by its substrate heme and by various non-heme substances such as heavy metals, bromobenzene, endotoxin, oxidizing agents and UVAEnzyme Number (IUBMB): EC 1.14.99.3 Genatlas biochemistry entry for HMOX1:heme oxygenase-1,rate limiting enzyme in the degradation of heme to biliverdin,inducible form,ubiquitously expressed following induction by several stresses,potent anti-inflammatory proteins whenever oxidation injury takes place15/16 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Hmox1) (see all 16
):
5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): About this table | Pathways & Interactions for HMOX1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/10 Sigma-Aldrich "Your Favorite Gene" Pathways for HMOX1 (Your Favorite Gene powered by Ingenuity) (see all 10
) 
Gene Network CentralTM Interacting Genes and Proteins Network for HMOX1 
5/101 Interacting proteins for HMOX1 (ENSP000002161173) via UniProtKB, MINT, and/or STRING (see all 101
)About this table
5/32 Gene Ontology (GO) biological process terms (links to tree view) (see all 32
): About this table
|
Drugs & Compounds for HMOX1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for HMOX1 |
Compounds for HMOX1 available from Tocris Bioscience About this table
10/33 Novoseek chemical compound relationships for HMOX1 gene (see all 33
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| biliverdin |
96.52 |
338 |
15741166 (5), 18385824 (4), 17825497 (3), 15004156 (3) (see all 99) |
| snpp |
89.97 |
47 |
10655786 (2), 17215323 (2), 10328571 (2), 9596945 (2) (see all 23) |
| cobalt protoporphyrin |
88.58 |
64 |
16309584 (2), 17919492 (2), 17665394 (2), 18042465 (2) (see all 34) |
| protoporphyrin ix |
81.78 |
97 |
12591764 (2), 11238670 (2), 7545388 (1), 10655786 (1) (see all 65) |
| verdoheme |
79.63 |
16 |
9063888 (2), 9054378 (2), 18331037 (2), 16154530 (1) (see all 8) |
| copp |
78.56 |
73 |
17065227 (6), 17964723 (5), 19387321 (3), 15932518 (3) (see all 23) |
| iron |
78.11 |
475 |
16439612 (6), 10872745 (5), 19250338 (5), 11389189 (4) (see all 99) |
| mesoporphyrin |
74.69 |
9 |
12835114 (1), 11435909 (1), 10933875 (1), 15564944 (1) (see all 9) |
| haem |
73.60 |
77 |
12622689 (5), 10839994 (4), 10833368 (3), 9063888 (2) (see all 33) |
| azalanstat |
71.54 |
2 |
15713406 (1), 16309566 (1) |
About this table
|
Transcripts for HMOX1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002133
Sigma-Aldrich siRNA and siRNA Panels for HMOX1  Sigma-Aldrich shRNA Panels and shRNA for HMOX1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002133 REFSEQ mRNAs for HMOX1 gene: NM_002133.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002133               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002133                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002133                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002133  Additional cDNA sequence: AF051791.1 AK313120.1 BC001491.2 BT019785.1 CR456505.1 CR541945.1 CR541968.1 CR590034.1 CR592402.1 CR594865.1 CR595835.1 CR596243.1 CR598003.1 CR600636.1 CR601640.1 CR603909.1 CR605543.1 CR609687.1 CR609692.1 CR611293.1 CR611539.1 CR612044.1 CR612068.1 CR615425.1 CR615434.1 CR615696.1 CR615878.1 CR615893.1 CR617367.1 CR617513.1 CR622130.1 CR623238.1 CR623301.1 CR623799.1 CR624289.1 CR625550.1 CR625992.1 CR626132.1 M23041.1 M23042.1 X06985.1 12 DOTS entries: DT.316089 DT.100826177 DT.100826183 DT.120670488 DT.100763288 DT.100772294 DT.91691570 DT.100036770 DT.100696678 DT.100736928 DT.120670441 DT.91842270 24/341 AceView cDNA sequences (see all 341
):CA306658 BQ710923 CR590034 CR615893 AI754564 CR609692 CR624289 M23041 BM706131 BF528933 CR615878 AU279619 CR592402 CD672139 CR598003 CR594865 CR601640 CR615696 BI835173 BP341746 CR615434 CR611539 BU731927 AJ712025
highest scoring ESTs for HMOX1:AA059444 AA187560 AA187582 AA454630 AA455893 AA456241 AA456727 AA682678 AA769700 AA845219 Unigene Cluster for HMOX1: Heme oxygenase (decycling) 1 Hs.517581 [show with all ESTs]Unigene Representative Sequence: BG165629
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for HMOX1
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | |
| SP1: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | - |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for HMOX1
1 Ensembl transcript including schematic representation: ENST00000216117
|
Expression for HMOX1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HMOX1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HMOX1
1 / 2 / 3 3 probe-sets matching HMOX1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CGTGGGTGGG
SOURCE GeneReport for Unigene cluster: Hs.517581
Expression variation in blood from EXPOLDB for HMOX1 |
Orthologs for HMOX1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HMOX1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for HMOX1
ENSEMBL Gene Tree for HMOX1 | Paralogs for HMOX1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HMOX1 gene
- HMOX22
|
SNPs/Variants for HMOX1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HMOX1 (up to first 250kb)
|
Disorders & Mutations for HMOX1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 141250 10/97 Novoseek disease relationships for HMOX1 gene (see all 97
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| cell damage |
59.32 |
38 |
15378604 (4), 11707736 (2), 16971418 (2), 19245827 (2) (see all 23) |
| shock |
58.09 |
141 |
15618017 (3), 8645700 (3), 8652820 (2), 18024796 (2) (see all 87) |
| inflammation |
57.50 |
161 |
11135063 (4), 19076005 (4), 17384141 (3), 16234431 (3) (see all 89) |
| neurodegenerative diseases |
46.91 |
15 |
12835114 (2), 18289070 (2), 9003061 (1), 11053673 (1) (see all 12) |
| ischemia |
46.41 |
56 |
17522519 (3), 16775600 (2), 15996234 (2), 10566971 (2) (see all 35) |
| necrosis |
45.97 |
68 |
18262556 (2), 9530200 (2), 12894236 (1), 15258907 (1) (see all 47) |
| atherosclerosis |
41.38 |
41 |
16999951 (3), 18769232 (2), 18289069 (2), 13678532 (1) (see all 25) |
| porphyria acute intermittent |
37.98 |
1 |
17973866 (1) |
| cerebral vasospasm |
37.09 |
7 |
11808338 (2), 14657544 (1), 15571165 (1), 18490853 (1) |
| porphyria hepatic |
33.71 |
1 |
11343251 (1) |
About this table
Human Gene Mutation Database: HMOX1 Genetic Association Database: HMOX1 Human Genome Epidemiology Navigator: HMOX1 (79 documents)
|
Medical News for HMOX1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HMOX1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1312 PubMed articles for HMOX1 gene (see all 1312
):- The DNA sequence of human chromosome 22. (PubMed id 10591208)2, 3, 4 Dunham I....O'Brien K.P. (1999)
- Heme oxygenase-1 genotype and restenosis after balloon angioplasty: a novel vascular protective factor. (PubMed id 15028349)1, 3, 6 Schillinger M....Wagner O. (2004)
- Length polymorphism in heme oxygenase-1 is associated with arteriovenous fistula patency in hemodialysis patients. (PubMed id 16374439)1, 3, 6 Lin C.C....Chung M.Y. (2006)
- Association of susceptibility to the development of lung adenocarcinoma with the heme oxygenase-1 gene promoter polymorphism. (PubMed id 15688187)1, 3, 6 Kikuchi A....Sasaki H. (2005)
- Clinical restenosis after coronary stent implantation is associated with the heme oxygenase-1 gene promoter polymorphism and the heme oxygenase-1 +99G/C variant. (PubMed id 16020495)1, 3, 6 Gulesserian T....Huber K. (2005)
- The microsatellite polymorphism of heme oxygenase-1 is associated with baseline plasma IL-6 level but not with restenosis after coronary in-stenting. (PubMed id 16232329)1, 3, 6 Li P....Humphries S.E. (2005)
- Heme oxygenase-1 gene promoter microsatellite polymorphism is associated with restenosis after percutaneous transluminal angioplasty. (PubMed id 11718398)1, 3, 6 Exner M....Wagner O. (2001)
- Microsatellite polymorphism in the heme oxygenase-1 gene promoter is associated with susceptibility to cerebral malaria in Myanmar. (PubMed id 16249618)1, 3, 6 Takeda M....Hirayama K. (2005)
- Attempted replication of reported chronic obstructive pulmonary disease candidate gene associations. (PubMed id 15817713)1, 3, 6 Hersh C.P....Silverman E.K. (2005)
- Association of myeloperoxidase promotor polymorphism with cirrhosis in patients with hereditary hemochromatosis. (PubMed id 15885363)1, 3, 6 Osterreicher C.H....Ferenci P. (2005)
|
Search for HMOX1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HMOX1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HMOX1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HMOX1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HMOX1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HMOX1:

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Incremental update: 13 Oct 2009
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